Array 1 233454-233976 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007206.1 Flavobacterium psychrophilum FPG101 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ============================= ================== 233454 40 100.0 29 ........................................ ACTGAAAAAAGCACCATTTTCAATATCAG 233523 40 97.5 29 ..........................A............. GCCTGCAAAAGACCCTTCTCCGATAGTAG 233592 40 95.0 29 .....................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGTAG 233661 40 100.0 29 ........................................ CTCTGCAAAAGCATCCTTTCCAATAGCAG 233730 40 100.0 29 ........................................ ACTGAAAAAAGCACTATTTTCAATATCAG 233799 40 100.0 29 ........................................ ATCTGCAAAAGCCTCATCTCCAATAGTAG 233868 40 97.5 29 ..........................A............. GCCTACAAAAGCATACCTTCCAATAGAAG 233937 40 77.5 0 .TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ======================================== ============================= ================== 8 40 95.9 29 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : TTAGCCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGATTTGTCATTACTTCTACAAAGTAATTGCCTTTTGCAAAGCTTGAAACATTTGTTTCTAAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTCCTCCAAACCGCGGCTGCCTGATAAACGGCTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTTTCCAATAGCAG # Right flank : AATGTATAAAAGCAGATTCTCCAATAGCAGTCACAATATAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAAAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGGGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1376863-1378499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007206.1 Flavobacterium psychrophilum FPG101 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1376863 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 1376938 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 1377014 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 1377090 46 100.0 30 .............................................. AGCGATGGAAAATGCGCACGAGCTTACGCT 1377166 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 1377242 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 1377318 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 1377394 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 1377470 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1377545 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1377621 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1377697 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1377773 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1377849 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1377924 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1378000 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1378076 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1378151 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1378227 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1378302 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1378378 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1378454 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 22 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTGCGTGGTACATCAAATTAGAAACGCTTGTAGATATGTGGTATGGAAAGACAAAAAACAATTTACAACCGATATGAAACTTGTTTATACAGCACCAACAAAACAAGCTGCCGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAA # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //