Array 1 1846-3217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXDU010000029.1 Escherichia coli strain ME2L-18-24 NODE_29_length_54424_cov_16.753062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1846 29 100.0 32 ............................. CAAGACGACGCTCAACGACATTGCCGACGCCG 1907 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 1968 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 2029 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 2090 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 2151 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 2212 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 2273 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 2334 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 2395 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 2456 29 96.6 32 A............................ CCATGACTATAAAAGCTTATATTTTGATAAAT 2517 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 2578 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 2639 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 2700 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 2761 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 2822 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 2883 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 2945 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 3006 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 3067 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 3128 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 3189 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28753-29818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXDU010000029.1 Escherichia coli strain ME2L-18-24 NODE_29_length_54424_cov_16.753062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28753 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 28814 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 28875 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 28936 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 28997 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 29058 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 29119 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 29180 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 29241 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 29302 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 29363 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 29424 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 29485 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 29546 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 29607 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 29668 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 29729 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 29790 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //