Array 1 5138-6493 **** Predicted by CRISPRDetect 2.4 ***
>NZ_FZXQ01000019.1 Neisseria meningitidis strain Neisseria meningitidis isolate B408, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
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5138 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG
5204 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT
5270 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG
5336 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG
5402 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA
5468 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA
5534 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA
5600 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA
5666 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC
5732 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT
5798 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC
5864 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA
5930 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA
5996 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT
6062 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT
6128 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC
6194 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT
6260 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT
6326 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG
6392 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA
6458 36 100.0 0 .................................... |
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21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT]
# Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37
# Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [4.5,0.68 Confidence: HIGH]
# Array family : NA
//