Array 1 50020-52014 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033837.1 Fusobacterium necrophorum strain FDAARGOS_565 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 50020 37 100.0 35 ..................................... CTCTATCATGGAATCTGTTAAGTAAATTCCATGAA 50092 37 100.0 38 ..................................... TTATTTTGTTCATTATTCCTCCTCTTTTTTTGATTTTT 50167 37 100.0 36 ..................................... TGCTTAACACAATAAAATTTCTAAAATTTTTCATTT 50240 37 100.0 36 ..................................... ACAATAATTTTTCTTTGTATTTATTTTGAATTTTTG 50313 37 100.0 34 ..................................... TTTCCAACTCCACCTTTATGCTGTTTTACCAAAA 50384 37 100.0 33 ..................................... TAATAATTTAAAATTTTCTTAAATGCATTTTCT 50454 37 100.0 35 ..................................... GAGCAAATTTTTTCCTCATTTTCTCTTCTAAACTA 50526 37 100.0 35 ..................................... TCTGACCGCTTCATAAAGTATTTTAAAAGTTTTTA 50598 37 100.0 35 ..................................... AATTTTCTTTCGCTTTTATAGCTTAAAAGTTCTAA 50670 37 100.0 36 ..................................... ACTCATAGATTCTCCCCAAATTAAGAAACTTGTTGG 50743 37 100.0 33 ..................................... TGTTTCACACTGTCTTTTTCTTCTGCCGCTATT 50813 37 100.0 36 ..................................... ATAATTCCGACCAACACAATTACTGCATTTGACATT 50886 37 100.0 35 ..................................... TGTTTACTTCTATACATATTTTCATCAACTTCTAC 50958 37 97.3 35 ..............T...................... GAAATATGATTTTCTTATTTCTAAATTGCTTTTGT 51030 37 100.0 35 ..................................... TCCATCTCCTCTAACATTGCTCCTAATTTTATTTG 51102 37 100.0 34 ..................................... TTTTTAATCTGGCTCATGTAAATTTTTTTCATTT 51173 37 100.0 35 ..................................... CTCTTCGTAACTTCCTTTTAAAAATAAATTCTTTT 51245 37 97.3 35 .................G................... TCTTTTCCCCACTACAGATACATTTAGTGATATTT 51317 37 100.0 35 ..................................... CCATACTTTGATTCCCTATATATTCTTGCATTTCT 51389 37 97.3 37 ....G................................ ATTCCAAGCTCTTTTGCCATTTTGCTTAAAGAAATTT 51463 37 97.3 34 .................G................... ACTTTAACATAAATTGCAAGTATTTTTTTTATCT 51534 37 97.3 34 .................G................... ACTTTAACATAAATTGCAAGTATTTTTTTTATCT 51605 37 97.3 39 .................G................... AGGAATATACACTTCCTCATATACTCCTTTTAAAAATAG 51681 37 97.3 36 .................G................... ACATTTTCTCATCTCCCATTTTTAAAAATTTAATGC 51754 37 97.3 39 .................G................... CATTGATACCACTTCCTTTTTTTTCTTTTATTTTTGAAA 51830 37 94.6 35 .................G........G.......... ACTAGCAAGAAAAACTAATATCAATCGTTTAACTC 51902 37 97.3 35 .................G................... TCAAAGACTACATCAGCCATATACTCCCCCCTTCA 51974 36 86.5 0 .........................A....-A...GT | CC,CG,C [51998,52003,52007] ========== ====== ====== ====== ===================================== ======================================= ================== 28 37 98.5 35 ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Left flank : AGAAAGAAGAAATAAAATACGAATTCGAGTAAAAATATGCATTGTCTCAAATAAAGTTTTTATAACATTAATGCTATTATCTGAAAATTTTAACATAAGAAAGGATTCTTCCAATTGATTGATTTTCTTTAGAAGATGACATTTCGTATTGATTTTAGAAAACATTCTGTATTTAGTATACACGGTATCAAGCTCTACTAATATTTTTTCCATATTTTTTCTCCTATTCTTGACGATTATATATTTATACTATACAATAGAAGTGGAAGAAAATAAAATATTTTTTTACGAAAGTATTTAATGTTTTATTTTATGCAATATAAAATCTTATTTGAAGGGAGGTTATGATTACGAAAGGGAAAATAGTCATATCAAAATATAAGTACTTTTTGAATAAAAATGTAGAAAAGTATCAATTTATTGTACACTTTTTTAAAAAAATTACGAAACAAAATAGTCAAAAAAGGATTGGAAATTATGAAAAATAAACACAGATTGCT # Right flank : TCGCCCACCTCTATAGGTAGTGTGATGAATTGCCCTATTGTTTTTTAGAGAACAAAGAAATATACTGTAATCAGTAGATATATAAAAATAGGAGTAAAACCAATGGAATTAGATAGTAATTGTCATTCAATATATAAGAAAATATCTTTGGAAAGAAATGTTTTGGTCTAAAAGTTTTTGTTTGTTGACTACTGGGGGGAGCTCCTATGGAAGTCATTAAAAAATATAGAGAAGAACAAGAACAAAAGAAGAAATCATTTTGAGGGAGGTGGACGGGTGAGACAACTAAAAGCATATAAATTTAGAATGTATCCAAGCGAAGAACAAAAGATATTTTTTAATAAAACGTTCGGTTGTGTTCGTCTTGTCTATAATCTTATGCTACATGATAGAATGAAAGCATAGGAAGAAAGGAAAGAGACCCCTGATAAAAAGACAACATATCCAACTCCTGCAAACTATAAAAAAAGAGTATGAATTTCTAAAAGAAGTGGATAGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Alternate repeat : ATTAAAGAGAATATCCAGCATTAATGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 2 177405-179286 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033837.1 Fusobacterium necrophorum strain FDAARGOS_565 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 177405 30 100.0 36 .............................. TGTTTCTATTGTGATAGAAATCAACAAAGCATAGCA 177471 30 100.0 36 .............................. CATTCTAACAGCCCTTTCATCATCTGTTTTTATCAA 177537 30 100.0 36 .............................. GAAAGATTGGAGAAGAGACAAAACGGAAGAAGATTT 177603 30 100.0 36 .............................. TAAATCAACAACTTCTAGCAATTCTTTGTAAGTGAA 177669 30 100.0 36 .............................. TAATATTGCTTTGGTTTTCTTTCGTAAATATCAATC 177735 30 100.0 36 .............................. CTTTTTTAAGCGGCTTAGGTTTATCATTTTTTCTTA 177801 30 100.0 36 .............................. TTAGAATTACTTGAAGTTTGTGAAGTAAAACTATTA 177867 30 100.0 35 .............................. TCATATGCCCCTTTTGCTGCTTCTTTTACTCCTCT 177932 30 100.0 37 .............................. TTTAAAGAAGAAAAACGAGAGGTAAAATACGAAAAGA 177999 30 100.0 36 .............................. TGATTATTCTTTATTAGTAAAAACATTAAAACAAGA 178065 30 100.0 37 .............................. AATTTAAAAGATTTTTTCTAAAAGCTTCTTTTTTCTT 178132 30 100.0 36 .............................. GCGTGAATAATTCTAGAAATGTCTTTTTCTTTTAAA 178198 30 100.0 36 .............................. TAACCGGAAAACTTCTCCACAAGCAGAAAATTATGA 178264 30 100.0 37 .............................. CCAAATGGAATTGTGGATCTTGATTATGCATTAGTAG 178331 30 100.0 36 .............................. GGTAGAACTATCACAAGAAAAAAATGGAAAATCATT 178397 30 100.0 36 .............................. AATGTGAAAGCAAATTTAGTTTCTAAGATTGAACAA 178463 30 100.0 37 .............................. AATCGATAGTTTTTCTTCGGAGGATATTTATAGTAAA 178530 30 100.0 38 .............................. TGTTAAATTTCCCTGGTCATTCTCTGCCGGGTATATTA 178598 30 100.0 36 .............................. TTCTGCTTGTGGAATTTGTACTCCAAGTCCAAGAAA 178664 30 100.0 36 .............................. ATTTTTAAAGAAGGTATGAGAGTTCTTTATAAAGAG 178730 30 100.0 37 .............................. TATATTTATCTATCACACTCATTTCTCTTAAATATTT 178797 30 100.0 38 .............................. GCAGTAGAAGAAGAAGACTACAAAAAGCACTTGAAAAT 178865 30 100.0 36 .............................. TATTTGAATGAAAAAAACACCGGGATTTTGCAGGTA 178931 30 100.0 35 .............................. AAAAGAAACAAAGAAAGGAGGGAGTATGGAGTTAA 178996 30 100.0 36 .............................. AGGAGCGAATACAGAAGGGGGAGACTGCTACATTTT 179062 30 100.0 35 .............................. ACGGTTCAAAATAGAAAGGAATCTATACAAAATTT 179127 30 100.0 35 .............................. GTTTTCTGCTAGATACATATTGTATCTAGTTGCTC 179192 30 100.0 35 .............................. ACCAGTCAGGCTAATGTACTGGCCAAGCCATTCCA 179257 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 29 30 100.0 36 CTTATAATAGAAACAGAGTGAAATGTAAAT # Left flank : CAAGTGCAATTGATTTTACATATCAGACCGGAAACGGTAGGGGAGAAGAAAGTATTTCAAAAGAGGAAAAAATTCGTCAGCATGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTACCTTACTTAAAGGAGTGAAAATAGAGAAAAAGATAACAATAAATTCTTATCAAAAAATAAAGGAGTTTCATTTGTAATAGGCTTTGTATGCATCTAGAAATGTTTTAAGTTATCACCAAAAGAAAAACATTAAAAACATTTTTAAGAGTTAAGGATAAAAAAGTATATTGAAATGAAATAATATGAGGGTATTTTTTTGCTTGTCGACCCCCAATAATGTAAATTTCCTAAGAGGTCGACAAACTACTTCTAATAAAGGACTAGAGATGATTTTTGACATTTTTTATTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTCGACAAATTTGGGAGTGAAAATGAGCTAAAATAAAAGACTTTATCTTATGCGG # Right flank : TATTTTTAGTATTGAGAAGTATTGTCAGAATCAGAAAAACTTATAATAGAAACAGAGTGGTCTTGTGGTTTGATAGGGATACTTATAAGGTTTTTAATTTTTCAAAAGTTTTATGATGAATGATATTACATTTAGGATACAATATAGTCTATGAAATGAACTGTTTGGAACTTTGAATAAGAGGATAAAGAAATGGATAAAAAAGATGAAATGATGATTGTAAGCCAGGAATCCCTTGAGAAAAAGATTTATATTATTAGGGGACAAAAGGTCATGCTTGACTTTGAATTAGCCGAAATCTATGGATATGAAACAAAGGCTTTTAATCAGCAAGTAAAAAGGAATATTGAAAAATTTGATGAAGATTTTATGTTCCGATTAACTGACGAGGAAGTCTCTAAACTTTCAAGGTCACAAAATGTGACCTTGAACAAGAGTGCAGGAAGAGGTAGTAATATTAAGTACAATCCTCATGCTTTTACCGATCAGGGAATCTATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGAGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 703604-699472 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033837.1 Fusobacterium necrophorum strain FDAARGOS_565 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 703603 30 100.0 36 .............................. GAAAAACAACACTATGCAATGCTATTTTATCAGAAA 703537 30 100.0 35 .............................. GCAATTCTTTCAACACCTTACAATACAAAAGTTAA 703472 30 100.0 37 .............................. CTTGTCCCGGAGTTCCTGCTTGGTTTAAAAATTCCAT 703405 30 100.0 37 .............................. ATTAGAAAAAGGAGATGTTGAGAATGAAACAAAGAGA 703338 30 100.0 37 .............................. AGCAATGCTTATTTGATGATACATAGAGTAAGCTGCG 703271 30 100.0 36 .............................. TAAAATGTAATTGGTAAATTTTCAAAATCATATTTT 703205 30 100.0 37 .............................. TTTTTCTTTACAATAATTTCATCTGTAAAACGATTTC 703138 30 100.0 35 .............................. CTAGTTCGTTGATAACATACTTTCTGTCCTCTCCT 703073 30 100.0 37 .............................. TCCTTACAGGTATGAATGAGTACTACATTTTAAACTT 703006 30 100.0 35 .............................. TAAAAACAGCAATATTTTCTGTTTGGGAAGTTTTG 702941 30 100.0 36 .............................. AGTCTTTTAATGTCTTCATTTCCCCCGCTCATGATT 702875 30 100.0 36 .............................. GAAGAAAAATTATTGTAGATGATTTCAGAAGAAAAA 702809 30 100.0 35 .............................. TTTTCTTGGATATGAAAAGTCAATTCTTAATACTC 702744 30 100.0 36 .............................. AATAACAAAATAAGTATAAGTTCAATATCAACGTCA 702678 30 100.0 37 .............................. TGAGAAGAAATATCTCTTATTTCAGGATTTAATTTTT 702611 30 100.0 36 .............................. TTTCTTTAAATTGATATGCTGTATGTTCCCTAGTTT 702545 30 100.0 35 .............................. AGTTAAATTCAAGATATTTTTTATAGTGCCTTTAG 702480 30 100.0 36 .............................. ATTCTTTCCTTCGAATAAGCTATAGCATTATCATCT 702414 30 100.0 36 .............................. ATCAATAATGGATTTCGTAGAACTCGAAATAACAAG 702348 30 100.0 36 .............................. TGCAGCAATACATGACAGGATTTTCAATCATAGATA 702282 30 100.0 37 .............................. AATAACGAAGACGATTTATTTCTTGAGGGACTTCTAA 702215 30 100.0 35 .............................. ATGCTTGATCGAAATCTACTATGTCCTCTTCTCTT 702150 30 100.0 37 .............................. ATTATATGATGCATTAGAATCAAGAATAAGTAGACTA 702083 30 100.0 36 .............................. GCTTTTATAATGGGGTTAGAAGATGAATACAACAAC 702017 30 100.0 35 .............................. GTAAAAGATATTTTAAAATTAGTTTTGAAAAAATT 701952 30 100.0 36 .............................. AATGTAAAGTTCTACATTTTCTTCAAGCAAATCCAT 701886 30 100.0 37 .............................. GCGGAATTAGTTGGAATCGCAAAAGGCATAGGAAGAT 701819 30 100.0 35 .............................. TCTTCTTTAATGTCTGGCGGAAGCGGAGCTTTATC 701754 30 100.0 36 .............................. AAAAAATACCCTATTTTTTATATTGGTATTAAAGTG 701688 30 100.0 35 .............................. TCTGTTGTTTGGGATGCCCACTATCAACAAACTAG 701623 30 100.0 35 .............................. GATGCACTTTTAAGGTTAAGAGGAGCAATCAATCC 701558 30 100.0 37 .............................. CAGGAAGTTTTAAATTCAATATTCAGTCAAGAAAAAT 701491 30 100.0 36 .............................. AGCAGGATTTAGGTGTAGTTGGAGATGATGTTACGC 701425 30 100.0 37 .............................. AGCTTTACTCTTACCGCACAAGATAGACACGGAGTAA 701358 29 96.7 37 ...............-.............. AAGTTCTAAAGTTTGAAATACCGACCTTTAATTTTTT 701292 30 100.0 37 .............................. TTTAGAAATGTTCCCGCACCTGCGTAAATTAAATATA 701225 30 100.0 37 .............................. GCCGAGAACGACGGGAGAGGTTAGAAAGGCTTACCGT 701158 30 100.0 36 .............................. AGAATAACAGATAAGATTAAAACTACAAAAATAAAA 701092 30 100.0 37 .............................. ACTCTATTTGTACCAAAATCTATATTGTACCCAATAA 701025 30 100.0 37 .............................. CAGGAATTTGGGGGGCTGTAGCAGGTCTAGGATTAAG 700958 30 100.0 37 .............................. ATGTGAATGTCAGATAAACATAAAATAGCTTTATTTG 700891 30 100.0 36 .............................. GCAACTTCTTGTGTACTTTTTAGCAAAGGGTTACCT 700825 30 100.0 35 .............................. AACTTGGGGATGTGCGAGGAGAGGGAGAAGTATCA 700760 30 100.0 35 .............................. ATTAACAGTAAACAAAGTTTAGCAAGTATGACACC 700695 30 100.0 35 .............................. GTTACTAAAATTGGAAATACATATACGATAAAAAA 700630 30 100.0 37 .............................. ATACTTCCATAAATTTTAATGTTTTCTATGAGGTAGT 700563 30 100.0 37 .............................. ACCGGTTATGGCTGCAAGCCAAAGACAAGCTTCTTTC 700496 30 100.0 36 .............................. GTTACAGTCCAATATTTTATGGAAGTTTCTAATTTT 700430 30 100.0 36 .............................. TTTTCAATGGCTGCATTATTTTTCACATAGTCCCAT 700364 30 100.0 35 .............................. GAGCGAAGACAAAACTTAGGCTATCAATTAAATGC 700299 30 100.0 36 .............................. TAAGTATATAGAAGAACACTGTTTAATACATAGTGT 700233 30 100.0 37 .............................. TAACTTATGCTGCCATTCCTATTTTTAGAGCGATATC A [700227] 700165 30 100.0 36 .............................. ATTTCTGCTAGATTTTCAACTATGCTAATTCCTTCT 700099 30 100.0 35 .............................. GAGAATAGATAAATATCAAAGTTACTACAGAAAAA 700034 30 100.0 36 .............................. CGAATGTAGATACAAGGGAGAATACGACAGACACCC 699968 30 100.0 34 .............................. CAAGAAGAAATAAGAACAGAATTACTTCCTGTTC 699904 30 100.0 38 .............................. GGCTTAATAGAAGAATATGATATTATAATACTGTCAGA 699836 30 100.0 38 .............................. AGTGGGAGAACGCGGAACGGGAAAAACCAGTGTTGCTA 699768 30 100.0 36 .............................. ATATATACACCATTTGCATAGATTTTCATCTGCATA 699702 30 100.0 37 .............................. AGTATCGTTCAATGGATTTTGGGAGTTTGCGGAACAA 699635 30 96.7 36 ...............G.............. TCGTACAAACCCTTAACTGCATTTGTAACCTCTAAA 699569 30 96.7 38 ...............G.............. AAAGGTCGGTATATAGTAGGGTATCAAGATGGAGAAAT 699501 30 90.0 0 ...............G......G..C.... | ========== ====== ====== ====== ============================== ====================================== ================== 63 30 99.7 36 ATTAGAGTATTACTAAAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTTTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : GTTAAAAATTCTTAGATGAAGAAATCAGGAAAAATGAATGATTTATTGAGATAAATGTAATATAATCTCTTAAAAAATAAATTCATGTATAAAATTTCAAAAAAGTATATTTTTATGAATTATCGTGATATAATTGAAATAAAAATTGGAGAAGAGAAAGGAGGTTTTTGTGAATACGAAAGAAGATTTTAATAAAAGCAGAGCAGCTCAAGAATTGTGGTTAAGTAAAAAAAATTGGAAAGAAAAAATAGAACATATAAAAATTCCTAGTTATTTAAAAGATGACTTAGAAGAATATTTCAAATATATAAAAGAAGGGAATAATATTATGTATTCAGCAGTAATCGATAATGTGATTGCAAGTATAAATGTTGCAGAACAAGAAAAGGATTTGACTTCTGAAGAAGCTAAATATATTAGAAAAATATTATAGGAGTATATTATGATTCAATTTAATGAATGCGAGAAAAACTTATTTCGAGGATATGATGGAGCAAATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAAAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 1839441-1836830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033837.1 Fusobacterium necrophorum strain FDAARGOS_565 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1839440 29 100.0 36 ............................. GTTTTCTTTGTTTTCTTGCTCTGCACTCGTGTTTGG 1839375 29 100.0 38 ............................. GCTATCACTTCCAGTCGCCGGGAGAATATACTCTTTTA 1839308 29 100.0 37 ............................. GCATTTTTCTCATAATGAAAAAATAAAAATAAATGGA 1839242 29 100.0 37 ............................. GAGAAACAAGAAAAAGGAGGTAAACATGCCAAAAATA 1839176 29 100.0 36 ............................. GAACTATAAACAAATTAAGAACTTTGGAGAATTAGT 1839111 29 100.0 36 ............................. GAAATACTTGGAAAAAGAAAAGGCGGATCTGTTCAA 1839046 29 100.0 39 ............................. GGCAGTTCCCAACAAATAACAAACCATCGTTGATTTCTA 1838978 29 100.0 37 ............................. GGATGAAAAATTAGTACATATTAGCTGGAAAACTTTA 1838912 29 100.0 37 ............................. GATATACAATCAAGGGAATCTAAGGAGGAAAATATGG 1838846 29 100.0 38 ............................. GCTTGCATCTCTAGGCATGATAAACGGTGCAGAATGCA 1838779 29 100.0 38 ............................. GTCAGACAACTTATGAATTTTTTCAGAAAATTGTTTAA 1838712 29 100.0 38 ............................. GATAGAAGAATGATGCAACTTCTTTCTTTTTTTCTTGT 1838645 29 100.0 36 ............................. GGGAGATCTTTTAATGAAATATGTTCAAGGTCTTCC 1838580 29 100.0 38 ............................. GTTTAGAAGTTTGTGTTTCTTCCATATCTTCCCATTTA 1838513 29 100.0 36 ............................. GTTCTTCAGTGCCCATTTGACAATGTCTTTCTGAAA 1838448 29 100.0 36 ............................. GGCGAGATGAGGAAAAGTACCGAGTAGAGTGCTTGG 1838383 29 100.0 39 ............................. GTCCACTTTCACTTTATCACTAAACAGTAGATGTCGCTT 1838315 29 100.0 37 ............................. GTTTTTTTCGAGAGGAGATGTGCATATCGTAAAAACG 1838249 29 100.0 37 ............................. GAGAATATATCCAATACAGTGCCGCCAATAGGACAAC 1838183 29 100.0 36 ............................. GAAGTAGGATTTCCTACTTAGGTACTAAAGGAGGAA 1838118 29 100.0 37 ............................. GGATTTCGGATTTACAAAATTATGAGGTTCCTGTCGA 1838052 29 100.0 37 ............................. GGAAGAAGAGAATATCTGGGTCTTGTTCAAAAATGGG 1837986 29 100.0 37 ............................. GATTTATTTTCCTTCATGGGAAAAGACAGTTATTGAG 1837920 29 100.0 38 ............................. GGAGTTAGCACATAAAATAGGAGTAGAGTTTGCTAAAA 1837853 29 100.0 37 ............................. GTTCAATACCATATTTCTCAATCAACCCTTTTTTTTT 1837787 29 100.0 38 ............................. ATTGATTTTCTGTATTTATAATTTCATTGGAAATTCCT 1837720 29 100.0 37 ............................. AGTGTATTGTAAAAATATATATCTTTCATCTTCAGGA 1837654 29 100.0 37 ............................. TTAAAAGATAAAGAAGAGATGGCATTACAAGCCATGC 1837588 29 100.0 37 ............................. TTATTTGTCGCTCGCTCAAGATGAAGAAACAGGTATC 1837522 29 100.0 37 ............................. TTCGTTGATTTCTAAGATTTTATCGTAATTTGTAACA 1837456 29 100.0 38 ............................. TAAAATTGGCTTGGTACTGATATATTTAGTAATTATAG 1837389 29 100.0 37 ............................. TTTAATAAATCAATAAAATTCTTTTTCATACTTATCC 1837323 29 100.0 36 ............................. TTTGACTAAATTAGATATAAAAAAAGAGCAAACCAA 1837258 29 100.0 39 ............................. TATACTTTCTCCTGATATTTGTAGAGTGATAGTAAAAGT 1837190 29 100.0 36 ............................. TGAGGTGAGTTTAGAGTGGGAATATTACCAGAAATA 1837125 29 100.0 37 ............................. TTTTGGAATTGTAATTTTATCCTCTAAAACATCTGAA 1837059 29 100.0 38 ............................. TTCTTTTGAGTACTCTGAAATATCTATTAAATCGGTAA 1836992 29 100.0 38 ............................. TCACATTTACTCTCTTTTCTTACACTATTTCAATCTTC 1836925 29 100.0 38 ............................. TAAAACAATCGCCTTTCTATTAAATTCTCCACCAATGC 1836858 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 40 29 100.0 37 CTTATAATAGAAACAGATTGAAATGTAAA # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTCCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTCCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : TTTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGGATTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAATTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTGGAAAGTAAGTTTTCTGTATGTCTTTAAAGTACGTGCTAAATGAAGATTATCACATCCTTTGTACTTCTCTAATAGAGAGAGAAAATTTTCTTTCTTCTTATGTTGAAATAGATAAAGAAAATTTTGATATATCCCATAGTATTCATCTAATTTTGGAATTTTCTTCAATAGGAAATTTACAATTTCTCCTGATGAAATATATTGTTTAAAAAAATAGTCATAGTAACGCTTTTCTGATAGAGAACTAGCTGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 5 1844350-1844775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033837.1 Fusobacterium necrophorum strain FDAARGOS_565 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1844350 30 100.0 36 .............................. ATATGAACAATCAGGATAAAAACCAAGAATTAGATT 1844416 30 100.0 37 .............................. AGAATCATCCGGTTTATATGTTTCCTTTGTTAAATCG 1844483 30 100.0 36 .............................. CGGGATTGATTAAGACACAAGCAGATGAACTGATAA 1844549 30 100.0 36 .............................. GAGAAAAGGAGATGAAAAAATATGAAAGAAAAAACA 1844615 30 100.0 36 .............................. TCTTCCTATGCCTTTTGCGATTCCAACTAATTCCGC 1844681 30 100.0 35 .............................. GGAAGAATAGATGAGAACATTTGAAGAAATAAAGA 1844746 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 ATTTAAATTTCAGTCTGCTTCGATTATGAG # Left flank : TATTATTTGTACATCTTCTATAAGGAATAACAAGATATTCTCTTGACAAAAAGAAATCTCCCTGATAGATGATGGCTCCTTCTTCATCGTCATCATCGTAATATCCAATATGTTTATTACCTTTATTATCAACATATAACACCGCTCCATACTTAAGTCTCATACCAAGTTTACCTCCATCTCATGAATTTTAAATATATATTTAATTATAAACTAATCATTTTTTAATATTTCATATCTATCGTATTCCAAAGTAAATTAAATTTTAAAATTATTATTATATTTCTACTTTCTGTCTTAGCACTTTTTTATAAAACTCCCAATATTTTAAGTATTTTAATGCCAATAGTATTTCCTATCATTAAGTAAGAATAATAAAAAATTATATTAAAAAACTTTAGAAAGAAAATACAGAAAAAAGTTCTCTCTCAGAGACAAAGAAATGAAAGTAGCACTAATATGAATGATTCAAGGCGATAAGCTAGGGTTTATACTGGATA # Right flank : GCCGCATAAGATAAAGTTCTTTATTTCAAATAATTTTTACCATCAAATTTGTCAACCTCTTGTAATTGTATCATTTTTTATTGATTTCAACAAACAAAAAATGTCAAAAATCATCTTTAGTCGCTTACTAGAAATAGTTTGTCGACCTCTTAGGAGATTTACATTATTGAGGGGCGACAAGCAAAAAAATACTCTCATATTATTTCATTTCAATATACTTTTTTATCGTTAACCCTTAAAAATGTTTTTAATGTTTTTCTTTTGGTAACAACTTAAAACATTTCCAGGTTCATACAAATCCTATTACAAATGAAACTCCTTTCTATCCTATTCCTTCTCTTTTGCCTTATTTATCTTCCCCAATCCTACCCAGAAATCATACTCACAAGAGACTATCTTTATCTCTTGATAAGAATTTATTGCTATCTTTTTCTCTATTTTCACTCCTTTAAGAAGATAAGACTCTACAGTCAAAGTATATTTCATCAACTCTTCACGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATTTCAGTCTGCTTCGATTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //