Array 1 345499-347234 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGW01000001.1 Gardnerella vaginalis strain UMB1642 .21837_8_65.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 345499 28 100.0 33 ............................ TACGCAAATGTCACAACGATAAATCACGTAAAC 345560 28 100.0 33 ............................ TGTGCATTCGATTCTTGCGTTGCTGACTAATAG 345621 28 100.0 33 ............................ TTAGCTCTTGTCCACGCTTTCAGCAAGGAGAAT 345682 28 100.0 33 ............................ TCGTTTGCAGCGTGTCGTACATTTCCGCTTCGC 345743 28 100.0 33 ............................ TGAGTGTTTCAAAGAAAGGTAGATATTTTGCTT 345804 28 100.0 33 ............................ TCAAAGTGCTAGACGAACAGTCACAGAAAGACA 345865 28 100.0 33 ............................ TGCAAAGGATGCAAAGCACACAAAGGATTATGC 345926 28 100.0 33 ............................ CCAACAAAGGGGACGGCACCAACACCGTCCCCT 345987 28 100.0 33 ............................ CCAACAAAGGGGACGGCACCAACACCGTCCCCT 346048 28 100.0 33 ............................ CGCTTTGTGTTTCATGCGCGCATTATGCAAAAG 346109 28 100.0 33 ............................ TGTAGCTGAGTACACCAATTGGGTTGAAAGCTG 346170 28 100.0 33 ............................ TTAAAGAGTTTTCCAAACCACGAACAGACAGCA 346231 28 100.0 33 ............................ CAGTCTCCTAGTCCGCAAACCAAACAAAAACAA 346292 28 100.0 33 ............................ CGATATTCGAGGTTCCTGGGCACGCGTTAAACA 346353 28 100.0 33 ............................ CAAGCAGTAAACAACATGCACATGCCAATAGTA 346414 28 100.0 33 ............................ TGGGTACCGGTTAATTTTGGCTTTAGAAATGGC 346475 28 100.0 33 ............................ TTTATGGACATATGCACCCTTGTTGCGAGAATG 346536 28 100.0 33 ............................ CATGATTAACCGTGTGCAAGGTCAAACAGCAAC 346597 28 100.0 33 ............................ CGTTATTTCCCTTAAAAGATCCGTAAGTTTCAG 346658 28 100.0 33 ............................ TTTCTGTATCAACATCATTATACTGTTTTAATT 346719 28 100.0 33 ............................ TAGTCCCACAACCACAACGGTTCACCCCAAACA 346780 28 100.0 33 ............................ CTTTTCTATTACATTATGTAGAAGATAAAGAGT 346841 28 100.0 33 ............................ TAGCCTTTGCTTCAGGCGCGCACACTTTAGTAG 346902 28 100.0 33 ............................ CAAAACGCAAGTGTTTTTTTAAGTAATCGCGTA 346963 28 100.0 33 ............................ CATCTTCTACAAAATAGCAATATTTGTAAATTC 347024 28 100.0 33 ............................ TGGAAAAATATTAACACCACTGATATTAGAAAA 347085 28 100.0 33 ............................ CAATGTCACCTTTTTTCACACCTTGCAAACGAT 347146 28 100.0 33 ............................ TAAACATTGCGTGCGATGAGAAGTAGCGTATCA 347207 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTCCCAATGAAATTACCGAGTTAACTGGTATTACGTGCGACATGCTTGAGTCTAATGGCGTAAGTTTAGACTTAGCATTAAAAGAATTTATCGATTTTATAGGGAAATTACCACTATTAGGATATAACGTATCGTTTGATATTGGTTTTTTTAATTCGGCTTTATTCTCATTAGGTGAGAAGTTCAGCAGCGCTTTTTCTATTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGATTTTTGAAAAATTATCAGTTGAAGACGGTTCTTCAGGAGTACAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCATAGATGCTAGGCTAACGGCGCGTCTTGTTTTTCACTTGAAAGGATTGTTAAAATTTATTTCATAAAAATAAAGCACTATTGTACTACTCTATGTGATAGTTTGAATTTGAAAAGTAAATGAGATTTGACTGTTTCTGTTATAGAAATGGCCATTTTATTAGGATTTTTAAGT # Right flank : CTAATCCTTGGTGTTGGACATCGCACGCGCTAAAACAATGGCAAGATACAGTAAATAAAAGCATCGAAGAGTACAATAAGAAGAGCATCAATAAACAGAAAGAAAGGAACAGCTCATGATGGGCACAATAATGGTAATCAGCATAATACTATTCATTGCAATGTTGATATTTGGATTTGCGGCTTGGATCTATGACTTGCTCCATTGCAAACCACACAGTGAACTCGGGCAACGTATCCTACGACTCGATGAAAACAATAATCCAATTGAAGATAAGAAAAAATAGTAAAGGAAACGAATGCACGATAGTAGCGTCTTTCCCGCATACGCGGGGGTGATCCTCACTGTTTACTTCTGCTAGTAGAGTACACAAGGTCTTTCCCGCATACGCGGGGGTGATCCCCTACACATGCAGCAAGTGCGGTTGCAGTAGTAGTCTTTCCCACATACGCGGGGTGATATCAACACCATAAGGGTTTTTATTAAAAAATTTCATTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 347547-347695 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGW01000001.1 Gardnerella vaginalis strain UMB1642 .21837_8_65.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 347547 28 100.0 33 ............................ TCACTGTTTACTTCTGCTAGTAGAGTACACAAG 347608 28 100.0 33 ............................ CCTACACATGCAGCAAGTGCGGTTGCAGTAGTA 347669 27 85.7 0 .........A...........-....AT | ========== ====== ====== ====== ============================ ================================= ================== 3 28 95.2 34 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : GATCCTGGAAAAATATTAACACCACTGATATTAGAAAAGTCTTTCCCGCATACGCGGGGGTGATCCCAATGTCACCTTTTTTCACACCTTGCAAACGATGTCTTTCCCGCATACGCGGGGGTGATCCTAAACATTGCGTGCGATGAGAAGTAGCGTATCAGTCTTTCCCGCATACGCGGGGGTGATCCTAATCCTTGGTGTTGGACATCGCACGCGCTAAAACAATGGCAAGATACAGTAAATAAAAGCATCGAAGAGTACAATAAGAAGAGCATCAATAAACAGAAAGAAAGGAACAGCTCATGATGGGCACAATAATGGTAATCAGCATAATACTATTCATTGCAATGTTGATATTTGGATTTGCGGCTTGGATCTATGACTTGCTCCATTGCAAACCACACAGTGAACTCGGGCAACGTATCCTACGACTCGATGAAAACAATAATCCAATTGAAGATAAGAAAAAATAGTAAAGGAAACGAATGCACGATAGTAGC # Right flank : TCAACACCATAAGGGTTTTTATTAAAAAATTTCATTTCTACATTTTCTATGATATACTAAAGGAAAGCACAGAGCGTAGGGGCTAGCTACGCTCCATGCAATCCGCTACTTGCCTTTCTTTATGGCATATAGTGCGACCATTGAAGTAATTATGACGCCAATAATTGCGAATATTTTATAAGTGACGTCAATAATTGTGAGTATGGTCTTTCACGCATTGCTGAGCGCTATGACATAACTGAATAGTTAAAGCATAGCTCGCGAAGGCAATGCGTGTCTTATAGCGAGCGTAATAAAGTGCGAACACTTTAACAATTACTGTAAAACACAACATATAAATCTCAAACACTATACGACCTGCTTGAGCGATTATTCCTCACGGCTTCGTAGCGGCTGATTTGGGAGCTTGCAATCCCATTGATTTCAAGCTCCTGCAAAGCACGCGAAAGCACTTTAGAATGCCGAGCGTGCTCAAAGTCGAAAGCACAGTGCGCTTTCAA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //