Array 1 130216-127488 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFID01000002.1 Gemmiger sp. An50 An50_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 130215 33 100.0 35 ................................. CAGTATTTCCGGCCGTTTGGAGCGAACAACTTTGA 130147 33 100.0 33 ................................. TTGTACAAGAAATCAATGAGCCACTACTACAAT 130081 33 100.0 36 ................................. TTCCGGCAACCACGTCACCGTCGCCCTGGTTGGCGC 130012 33 100.0 35 ................................. GCCATTGGCCGGTACGACATCGACATGACCAACCT 129944 33 100.0 35 ................................. TGGCTGGCGTACCGGCCGTAGCCTGCCCGCAGCAT 129876 33 100.0 35 ................................. TCCAACCTTGGCCCCGGCATCAACTGGATCATCGC 129808 33 100.0 34 ................................. CCTGCTGGATGCTGTTGGACAGCTCCGAAGCACC 129741 33 100.0 37 ................................. ATCTTCCGAGTGCTTGCTCGCAGCAGCTGCCGCAAAG 129671 33 100.0 35 ................................. GTGACATCGGCCGAATTGAAAAAATAGACACCGGA 129603 33 100.0 35 ................................. ACATTCAGAACGCCAACGAAGCAAAAAAGACCGCC 129535 33 100.0 33 ................................. ATCCAGACCGCTTGCCAGCTGCCGGATGTAGTA 129469 33 100.0 35 ................................. CGAGATGTTCGACACATCCACGCCGTTTGGCATTG 129401 33 100.0 35 ................................. TGCTATCCGGCAGGGCGCTTTTTTATTACCATTTC 129333 33 100.0 35 ................................. CCAGATCGTTTGCCCGGTGACCATCGCCAACATTA 129265 33 100.0 33 ................................. CGTCTTTGGTTCCCAGTTCCTTAGCGTCCAAAG 129199 33 100.0 34 ................................. CATAGGCCCCAGTCTTGCGGATGCTGGGCAGCAC 129132 33 100.0 34 ................................. TTTGGCGGCGTCGGCGGCGTCGTCTGCGTCATCG 129065 33 100.0 34 ................................. GTCAGCCTCCGGTACTTCTTGGCCCGCTCGGCCA 128998 33 100.0 34 ................................. TCCATGGCATTGAAGAACTGCCCGCCCTCGTCAG 128931 33 100.0 33 ................................. GCGACCTCAATCAAACCATGGGCGATCACTACA 128865 33 100.0 36 ................................. TTGACTTCCAGCTCCTCGGAAATGGTGCGGGACCGG 128796 33 100.0 35 ................................. GTCATGGGGCAGACCATCAGCTGCGCCGCTGTCAG 128728 33 100.0 33 ................................. TTTAGTAATAACTCACGGCGAAAACCACGCCCG 128662 33 100.0 34 ................................. CACATCATCCAGCCCAAGGGCTTTGTGGGCTTCC 128595 33 100.0 34 ................................. AACACAAAGTTTACCGGCGCATTTGCTCCCGGCG 128528 33 100.0 35 ................................. CCGGTTTCCGGGAAAAAATGTGTATTGCCGCGAAG 128460 33 100.0 34 ................................. CGGTTGGCGAGGGGCGCACGCTCACCAACGAAAC 128393 33 100.0 36 ................................. AGATCCGAACCTCCTGAAGGCAGAGCTCACAACATC 128324 33 100.0 35 ................................. GACTGCTAAACCGGGTGCACGGCCCACCCTTTAGG 128256 33 100.0 34 ................................. AACTACGAGGGCTGGGGCGCATCCAAAACCGGAT 128189 33 100.0 35 ................................. TTGTTTGCCCCTCCGGTGCTACAATGAACAGGAAG 128121 33 100.0 35 ................................. ATCACGGCTGGCACCCTCAACTGCGCTCTGCTCAA 128053 33 100.0 34 ................................. CGTGGGACAAGGGCGCAAACGGTGAGGTTATCAC 127986 33 100.0 34 ................................. GTACTCCTGCAGCTTGTTGGCCACGCTGGCGGGG 127919 33 100.0 33 ................................. AGCTTTGTCTCCGGCGGTGAGGACATCACCATC 127853 33 100.0 34 ................................. CCTCGGTGACGTTGTGGTTGTCCCACGCCGTAGG 127786 33 100.0 33 ................................. CAGCGGGTAGCGGAATCCGAGAATGTCCTGCGG 127720 33 100.0 34 ................................. TACCCCACTGCCAACCGGCCAGGCGGCCAGCATC 127653 33 97.0 34 .....T........................... TTGTTCTGGGCGCAGCTGATCGACCAGCTATAGC 127586 33 100.0 33 ................................. CATCTGGCCGGGGTCAGCGGGAAAAACATCATC 127520 33 84.8 0 ...........C.TA......T...G....... | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 99.6 34 GTCGCCCTCCGTACGGAGGGCGTGGATAGAAAT # Left flank : AAGTGAAGCAAAAGGGGCGTGTGATATGCTGGTTCTGATCACCTACGACGTAAACACAGAAACACCGGCCGGACGCAAACGCTTGCGCAAAGTTGCAAAAATTTGTGTTGATCACGGGCAGCGCGTACAAAATTCAGTGTTTGAATGCCTGCTGGATGCGGCTCAATATGCGGTTTTGAAAGCAAAATTGACGCAGTTGATTGATCCGGAATGCGATAGCCTGCGCTTTTACTGTTTGGGAAACTCTTACAAGAAGAAGGTGGAGCATATCGGGCGCTGCCCGCAGTGGTCACAGGATGATGTGCTGCTGCTGTAGCGGGTGCGAACATGAAGCGCACAGAAAAGCACTGGGACCTTCGCACCAAAAGATAGTTGAAAAATGATGTAAAAGAGCACGAAATAGTTTTGATAGAAGCAGAGAGTATGTATTTTGTAATATCAGAACGACGAATTTTCGTGTTTGTGCTGCAAAAGCAAACAATATTTTGTGAACTTTTGCT # Right flank : CTTATCTTGATAGTTTAGTAATAACTTACGGTAGTTGTCCTCTGTACAAAGTACGTATGCGGAGTTTGTACAGAGGGCTCATTTTGCTGATTGTTGCACAGAGAAGAGTACAGCTTTTTCGGGTATCAATTTCATCACGCAAACTCACGTCGGAATGGACTACGCTCCATTCAAAAAGCCCAGCCAGTTGGCTGGGCTTTTCTCATACCGCTCCGTCATTCCTCCTTCTCCCCACAAAACTTTGCAGTGCAAACTTTCGCGGGGGCCCCGCCCTACGGGCTCAGAAAGGGAGTAGGTGTCAATTTCATCACGAAAACTCAAAAAGCCCGAATGCAAGTTCATTCGGGCTTTTTTCTTATTCACTCCTAACTTTTCGCTGAATACAACCATCTAGCCGAGCTTTTAAAAGTGAACAGGAATAGGATATTGGTCTTCATACGGTGCCGCTGTGGTTTAGAATTCGAATCAGAATCTTCGTAATATAATTTTGAGGATTTACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTACGGAGGGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 139186-138278 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFID01000002.1 Gemmiger sp. An50 An50_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 139185 33 100.0 34 ................................. TATGATGAGTTCCATGATGGATGATAAAATTAAC 139118 33 100.0 34 ................................. CGTATGCTCAATTGCCTGCTTAAGCTGCTCCCTT 139051 33 100.0 36 ................................. CGGCGGCACCTGCGGCCCCGGTCAATGCGCCTGACG 138982 33 100.0 33 ................................. TTGCATCCCTTAATCCTAAAACCACATTGGCGG 138916 33 100.0 34 ................................. GATGAGGCCACGGTGCGGCGGTTGATTGTGGAGC 138849 33 100.0 34 ................................. AACCGTGTGATCAGCATCACCCAGGTGGCGGATG 138782 33 100.0 35 ................................. TAGATTAAGCAATGCCCTTTCGTGGAGCCTGCGGC 138714 33 100.0 33 ................................. GTATTCAGCAGCATAATCTGTGCGCTGCCTAAA 138648 33 100.0 34 ................................. CAGAGCTCTCGGCGATTTCTCGTTCCGTGGTCAG 138581 33 100.0 34 ................................. AGGAACACATCAAGGTTCTGGTCGAGTTTTTCAG 138514 33 100.0 36 ................................. GAGCGGTTAAAGCGCACCCATCCGAGGCAATACGAA 138445 33 100.0 34 ................................. CAGCGCGACTGGGGCACCGTGATCGACCAGCCCA 138378 33 100.0 34 ................................. ATCGTGTAAGTCAGGCTGTTCTCCATGTGTAACA 138311 33 78.8 0 ............G.......TA.CT.A.T.... | T [138286] ========== ====== ====== ====== ================================= ==================================== ================== 14 33 98.5 34 GTCGCTCTCCGCAAGGAGAGCGTGGATAGAAAT # Left flank : GGCATGGAGGAATTTTTATGATGCCGGAAATGAGTACTTTTTCTCATAAGAAAGAAAAATTGTGGGTTGCAGCTTACTGTCGAGTCAGCACGAAGCATTGGTAATGTGCTGATGTAGAAAACCTATACACCTGTTTTTTTAAAGGGTAAGCAGGAAAAGAATGACGGTACTTTCGGTATGTTTTCGTGGAGAATGCGCAGGAGGCAATTGTTGCTAAAGTGATATTCGAAAAAGTTCAAGAGAGGAAAAAAGCGCATTCAAAAAAGACTTAAAGTTTTGTCTCGAGGCGCATGGTTAGATGGAGATTAGAAAAGATTGTTTTTACTCTAGTGCGAGTATGAAAAGAACATCAAAATCCAGGAGTCTTCGCACCAAGAAATGCCTTTCAAAATGTATCAAACGTCGAAAGAACTTTGACAAATCTCTAAAAATCGCGTATGGTAATGGTATTATAGCAAGTTTAACTACAAAAAAGAAACTGTTTTTTGTGGCATTTTACT # Right flank : CGGTTTAGCATTGCGCTGAAAACTACGCTTTTGTTTGTTTTGACGTAGTATTTCGGAATAGATAATAATGTAAAAATATTTATGAAAGCAAAATCAAATGGGAAATTCAGGAAATCAATCCGTACTATTGGACATTCAGCGTGTTATACTTTAGAAAAGGCTCACAGTTGAATGCGGAGGTGAAAATATGAACTCCATGGATGAATCCTATAGATTGGCACATGTTTCTGAGGATGGGTTACGCCCGCAAACGATTTTGGAACATTTGAATGGAACGGCAAATCTGGCTTCCGGTTTTGCAGAACCCTTTGGTGCTGCGGCACAGGCGTATCTGGCGGGAATGCTGCACGATATCGGAAAATACAGCGATGCGTTCCAAAAACGACTGGCTGGTGGGGAAAAAACAGATCATTCCACTGCCGGTGCGCAGGAGGCCTTTTCCATGAGGCAGCTGGAGGTGGCTTTTGCAGTGGCAGGACACCATGGCGGCTTGCCGGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGAGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5378-7127 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFID01000023.1 Gemmiger sp. An50 An50_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5378 36 100.0 29 .................................... ATACAATCCAATACTACCACACACTACAC 5443 36 100.0 30 .................................... GTACGACGACAGGGAAATGCCCAGCGTGAT 5509 36 100.0 31 .................................... TGGTGGCATCGTCCAGAACTTTATCAATCTT 5576 36 100.0 30 .................................... CTCGTCCGTTACACAGTGCAACACATGGTT 5642 36 100.0 30 .................................... ACAAACAGATTGCTTCACACGCTTATGCTT 5708 36 100.0 30 .................................... AACAGCACCGCGCGGCCCTCTGGAGGCACT 5774 36 100.0 30 .................................... CGGCATGATGGTGGGCCACGATACCCTGTA 5840 36 100.0 29 .................................... GCCTACAATAACAAGCAGCTGGGCGTGGG 5905 36 100.0 30 .................................... GAACAGTATTTGAATCATTCCCAGTATACT 5971 36 100.0 30 .................................... TTCTCGGTAGCGCGGGCCCGGCATGTTGCG 6037 36 100.0 29 .................................... TTGCTGTTGAATACTGCGAAATAGCCTTC 6102 36 100.0 30 .................................... CCATAACGTGCGCTGTAAATGTCAAAGGGT 6168 36 100.0 30 .................................... GCTGTACGAGGTTTCTGTGGTTACCTTCCC 6234 36 100.0 30 .................................... TGAAAAGACGGACGATATGATCCAGTACGA 6300 36 100.0 30 .................................... TAGGTATAATTGTTCGTAACCTTGTTGTAT 6366 36 100.0 30 .................................... TACCAGCAACAAAAGGCGCGGAACAGTTTA 6432 36 100.0 30 .................................... ATTTCTGGGCTTCATCCTGCCAGGTTGCTT 6498 36 100.0 30 .................................... GAAAGAGCGGCTCAATCAAAACTCGCTAAC 6564 36 100.0 29 .................................... AGTTCTTCGCGGCGAAGGGTGAGCATGTT 6629 36 100.0 30 .................................... TGACGAGTTGTACCCCCCTGATAGACCACG 6695 36 100.0 30 .................................... ATTTCTGGGCTTCATCCTGCCAGGTTGCTT 6761 36 100.0 31 .................................... GACCGGATCAAGCAGATCAAGCGGAACAGCC 6828 36 100.0 30 .................................... CAGCAGGCTGGGAGTTTTGTCATCAGAGAC 6894 36 100.0 30 .................................... TAACCTGTCCGTTCTTTGCTTTCTTGCTCC 6960 36 100.0 30 .................................... GACCCGGCAGGAATGGCTGCAGGGCCAGAG 7026 36 100.0 30 .................................... AGGCGAAGCAACGGCACCTGAGATATGCCC 7092 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTGGTTCTCTGATGGATATTGATAAACTGATAC # Left flank : ATGCGGGTGCGGTACGCCATCGATCGGTATGTCAAAAGCCTGACCAGTGCCATTGAAGGGCAGGACGCCGGACTGCTGCGGCTGCCGGAACTCATCCGCAACGACCCCACCTTTGAGGATGAACAGGATGGCTGAGAGATTTATGCGCCTGATGGTATTTTTTGACCTGCCTGTGAATACAAAACAGCGCCGCAAAGAGTATTCCAGATTTCGTAAATCCCTGATCAACGATGGTTTCATGATGCTGCAATACTCGGTTTATGTCCGCCTGACCCGAAACCACGACGATGCCCAAAAACACCTGCGGATTGTAGAGGCAAACCTTCCGCCGGCAGGCTCTGTCCGAGCCATGATCGTTACCGAAAAGCAGTACACCCAGATGAAGCTTCTGTGCGGCGCGCAAATGAAGGACGAGCATTTTCTTGACACAAAAGATCTTCTTGAGATATAATCTAGTAGAACAAATGCTGTCAAAACCGCAAGATCCACAACATCTTGCG # Right flank : CCTTTTCGCCGCTGATGTCTGCGGCGGTGATGTTTTGGTTCTCTGATGAATTTTGGAGCGCTGTTTGTATCTCTTTTCAAGCAGAAACTCCCGTTTATGCGCCTTCAAGTTTGGTGGCATAAACGGGAGTTTTTGTTTCATCTTCCTATTCGGAGTGATTTTGCGTTCCATTCGCTTTTCTCTGAAACACGAGTGCGTTACGAAGTATCCGAGGTGCGGAAGTATACCCCCGGAGCCGGACATCTCTTCTGGATTTACTGTACTTTCGGTTGTATCTTCTGCGGATTTGGCGTATACTGATATTAACTAGTATCAATTTGTATCAGTATTGGAGGAACTTTCGATGGATGCTTCCTTGTTTGCGAAAATGCTTTCAGACAAAAGCATAACGGATCTAAAAAAACTGGGCTACAAATATCCTAAAGCGGATCTTCAGGAGTTTGTGGCACTTCTAAAGGAGAATTTCTATCATAAGCTACCGCTGAACGATTTCGACGGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTTCTCTGATGGATATTGATAAACTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //