Array 1 18292-18657 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MDJC01000013.1 Haemophilus quentini strain C860 C860_contig_20, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     18292	    32	 100.0	    34	................................	ACCTGTGGCAGTTACACCTGCTTCTAAACCGCCT  	
     18358	    32	 100.0	    36	................................	TGTAAATTCCAGGCTATCTTCGGCTTGAATGTTTGG	
     18426	    32	 100.0	    34	................................	AGCTCTAAAAACTCAACCTCTTCAACGCAACCAG  	
     18492	    32	 100.0	    35	................................	TTCAATATCAATAAAGGTTCCATCTGCAAAGCCAG 	
     18559	    32	  96.9	    35	.............T..................	CGTAATTATCGTTTTAAAGCCGATTATGATTATCT 	
     18626	    32	  87.5	     0	.......T...T.C.......C..........	|                                   	
==========	======	======	======	================================	====================================	==================
         6	    32	  97.4	    35	GCAGCCGCCTCCGAGCGGCTGTGTGTTGAAAC	                                    	       

# Left flank :   TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGATGATCCAAACGGGCATGTGCGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGTGTGCGGGCGCAATATTCAGTATTTGAATGTGATGTCACGCCTGACCAATGGGTCATTTTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGCCTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGGACATCATGGGGCAAAACCAGCAATAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAATCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGAATAAGTTAATCTATTTGTATAACGGCGGTATGACCGTTATACTTATTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGGGA
# Right flank :  CTGTAATCACAATCAAATTACCGTCATTAATACGGGTAGCTGCGGATTTAAGTAAGGATGAAATAAGACAAACGACTATGTCAGTAAATTGATAACTTAACATTTAAATACAAAAGAGCGGTCAAAAATACGATAATTTTGGGCCGCTTTTGTTTATACGATTTTAATTTAACTAATTTAAAATATTAAGCTGCTCTAAAAATTCTTCTTCTGTTAATACTGGAATATTTAGTTCCTGCGCTTTGGCTAGTTTAGAGCCAGCTGCGTCACCTGCGATGACAAAGTCTGTTTTGCTGGAAACTGAGCCACTTACTTTGGCGCCTAGTTGTTGTAGTAATGCTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCAGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGACTTCTTTTACTTCCACGGTTTCCCAATGCACGCCTTGTGCGATTAAATCCTCAACGACAGCAACATTATGGGCTTCACGCCAG

# Questionable array : NO	 Score: 6.13
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGAGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-3.50,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.74   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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