Array 1 9942-9426 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000004.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 9941 26 100.0 36 .......................... CCGAAGATGGACGATTAAAGCGGACTGTTCAAGACC 9879 26 100.0 35 .......................... CCGCAAGTGGTACTGATGCGGTGCTGTTCTATGCA 9818 26 100.0 35 .......................... CCGCAAATCAATCGTACAGACGAACTGGGACAACT 9757 26 100.0 35 .......................... CCGCCTCATTGACTAATCGAGTATGAACAGGACCG 9696 26 100.0 36 .......................... CCGGTTACCGACATATGTTAAAGAGCCTGTTATTTC 9634 26 100.0 35 .......................... CCGTTTTTGAATGAGCTTGATGAACGGATAAAACA 9573 26 100.0 35 .......................... CCTGCAGTCAGAGCTACAACATGGTAACCCTGTAC 9512 26 100.0 35 .......................... CCGAGGTGATAAGATTTAATTCTTATTCATTAACT 9451 26 96.2 0 .C........................ | ========== ====== ====== ====== ========================== ==================================== ================== 9 26 99.6 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TCCCAAATCACCTGTTGATTGCGAACGGCGATCTTCAATATTATCACTCTCTCTTTGGTCTCTCCAACGCATAGTAATTATCTCATCAGTTTTGGTAAGTTTATTTTAAAGGATAATAGAAAAGGATACTAGGTTAAAGTTTCTACAATTTTGGTGTGATTTTGATTTTATGCGTATTACGTTTTGAGCATAAAAATTATTGTTAGTCTAAAGATTAACCCTTACGAAAGTAAAACCGATTCCTTATTAAAAGGTCGGAAACTATAACCATAAAAAAATCGGTAAGAATTAATATTTTTTTATCTAACTATTGTTTAATTTACGTATCATGATGAATTTACATTAAAAATTGGTACATTTTGGTAAAACGACATAAATTAAAGTAATCTTACTTATAGTATATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTATCGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : TTCTAAACAGCATTAGTTAGCGTTGTTTTAAAATAGTCATGATTGGATGCAGCAAGCTTTAAATTCTTTTGTGGTTAGGTTTTGGACGTTTTAGTCTTTAGTGACACTAAAATGAATGTAGTGTTCACGTCCGAGTAAAGGAAATTTAGCGTGAAATTTCCTTTACAATCCTAAGTTTGCCGCCAGAAGTACTGGTCACTGCGTGACTGCCCTCGCTTTGTTAATTAGCATTAAACGAACCGATGAGTATTGCACTTCCTTGTGCGCCCTCATCTCATTTGGCATCCTGCCCAATGTTCTATGCTAATTAACTCACTCGGCAGTACTTAAGCGGAAATACAAATTCAATGATTTAATTAGATTTTTAACATCATTAATAAAAATTTATTGTCTATCCACTTAATAATTGTTTGTGCTAATTCCGTGCCATACAAAGTGCTGACAACTAAGGCTGGTTAGCAAGTCAAACAAGGCGGTTTGGCAAGTTCGTGTTTTGTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90506-90113 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000021.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 90505 26 100.0 36 .......................... CCAGTTGTTAAGTTGTTGTTTTTGTGTGATTGATTG 90443 26 100.0 35 .......................... CCGCCGTCGATAATTGTATTAATAACAGCTATTCC 90382 26 100.0 35 .......................... CCGTCAAATAAATAAAGCATATGCGTTATCTAAAT 90321 26 100.0 35 .......................... CCGGAGTAAATAATGGAAAAATTAACACCTTTACC 90260 26 100.0 35 .......................... CCGCAGACAATGCTTTACTGATCGTATCGATTTTT 90199 26 100.0 35 .......................... CCCCTATACAGGTACTCGAGACATAACTGGACGGC 90138 26 84.6 0 .....................T.TCT | ========== ====== ====== ====== ========================== ==================================== ================== 7 26 97.8 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CCCATGCCATATTTACGGCACAGTTCTTTAACCGGAATACCCGCTTCAGCTTCTTTTAAAATAGCGACAATTTGATGTTCAGTCATTTTTTTCATAATTAAATCCTCTTTTACTTTTATCATAGAGAATTTTCTACTTTTAGGCTGTACTATTTTAGGGGATAGTTACATTCTATATTAAACAATCGATAGTAATTCAGTGGATAATAAACCTTGTATGATAGTGAACGTGTGTAAAAAATATACCATAAATCAGTAGGGCAAAGCTCACGCTAATACGAGAGTAAAAGATAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTATTTCTTGGTGGAGCGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAAATAGCTACAATTAGA # Right flank : CAATCCATAAAATCCTTAATACCTATCTATAAAATATCGCATAATGCGGTTATCTACCGTTAACTCAGGGTGAAATGAACAAACCAAGATATTATCTTGTTGTGCCATTACACAATGATCATTAACGAAAGCAAGTTGTTTGACTTGTTTACTTGCTTTTATAATATACGGTGCCCGTATAAAAACAGCAGGAATTTGTTGACCGATTAGTTCAATATTTAAAAGTGTTTCAAAGCTGTTAATTTGTCGCCCAAAGCCATTGCGCTCAACACTAATATCGATTAAGCCAAGCTGTTCTACTTCATTATGTGTTGTGGTTTTACCGCAAAGCACAAGCCCTGCACAAGTTCCTAAAACTCCTTTACCTTGTTTAGCTAATTGTTTTATTGGCTCTATTAATCCATTTTGTTTTATTAAGCGACTAATAGTGGTTGACTCTCCGCCGGGAATAATTAAGCCATCTAAATTAGCTAATTGTTCGGGTTTTTGAACGAGTGTTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 247-884 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000036.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 247 26 100.0 35 .......................... CCGATGCTATCAGTATTGCACCGATCGGCGACGAC 308 26 100.0 36 .......................... CCGCATTAATTTAGTTGACGGGTTTTATATTAAATC 370 26 100.0 36 .......................... CCAGCAGCTGGTATACTTTATTTAGGATATTTTAGA 432 26 100.0 35 .......................... CCGTTTTCAACGACAACGGCAGGTAAATTAGTTTT 493 26 100.0 36 .......................... CCGGTTTGGCTTCAAATACAATTGAACGACAAGTGC 555 26 100.0 35 .......................... CCTCATCGCATTCAATTAATTTTGTCAAAACTAGC 616 26 100.0 35 .......................... CCGCCAGCTTTGTTGGTTCGAATGTGATATCTGTG 677 26 100.0 35 .......................... CCGCAGAAAAAGACAAGGACAGCGTAATAAATGAT 738 26 100.0 35 .......................... CCGCAGGGCAGGGTCGTTAGTTATTGCAGCCATAC 799 26 100.0 35 .......................... CCGGAGCCAACTCTTTGGTATCAATATCCTGTGGT 860 25 92.3 0 ......................-.C. | ========== ====== ====== ====== ========================== ==================================== ================== 11 26 99.3 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGAG # Right flank : ACCCCTTTATCTTAATGCGAAAACCCTAACCCACTTAATTAATAAAATTTTAAGTGGGCTTAAAAGCAGCAACCTAAAAAAACATGACTCACTAAGCTTATCTTAAATTTCAATAAATTAACTTCAGTTAAATATTGCAAATTGTGTAAAAATCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAGCAGATAAATATGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTATAGTTAAGGATGTCTCGGTTGTTAGTATATCAAATGCCCACATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCCTTACGGTTTGGTTTTCTAATAAAAACAAAGCAATCACGCTATCAATGTAACAATCCTCAACGCCAGATTTATGGCTATCTATTCATGCCCCTTAAAACAACTAATCATTAATCCATTTAATGGGGTAAAACGCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1033-885 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000039.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 1032 26 100.0 35 .......................... CCGAATATTATCCCTCCAGAAAGAAACCTGCAGGG 971 26 100.0 35 .......................... CCGACAGAAAAATACGAGATCGCTAAAGTCAAAAT 910 26 84.6 0 ......................ACCC | ========== ====== ====== ====== ========================== =================================== ================== 3 26 94.9 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ATAAGTAAACTAATACAAGTTAGAATATTCCTAAAATTTGCAAACATACCACTACTAATCTCTAAATATCGATCGTTATAGGCATAGGAAGATTTTATTGGTTTGAAGTTATTATTGACGGATTCTTGAGTATAGTCTTTGGGCTTCTTTTGGCGTCATATTATCGCTAGTATAGCCCATTTTCAATTTTTTGTGGGGTTTGGGTTTTTTAAGCCTTGAGAGTACAAAGACTATTTATCCGCATAATGTTAAAAATATCGAAAATTATAACATAAAACTGGGTAAAATTAATATTTGTTTTTATTTAGGGAGATGTAATTTTCGTATCTTGATGAATTTATATTAAAAATAGAGTCATTTTGGTAGGGCGACATAAATTGAATTGAGCTTGTTTTTTTATTTTTTAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : CCCTTTATCTTAATGCTAAAACCCTAACCCCATTTAATTGATAAAATTTTAAGTGGGGCTTAAAAGCAGCAACCTAAAAAAACATGGCTCACTAAGCTTATCTTAAATTTCAATAAATTAACTTCAGTTAAATATTGCAAATTGTGTAAAAATCGTGTAATTTTATGCCTGATTTTAGTTATCATTACTGATTATTAAAATTACCGATAAAAATAGATAAATATGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTAAAGGAAAAAAAATGGTAAAACATTTAGATAAAATCGTCGAACAAGCAGGACAAGCAGGGAAAGATTTGCTTAGCCAATTAACAAATAAAGTTAGCCATAACCGTTACACACTAACCATTGATGAACTCAGCACTCCTATATCGGTGTTAAACGTCAAAGGCGAAGAGGCCTTAAACCAGCTGTGGCGTTACACCATTACTTTTACCAGCGCCAATAAAACCCTATCTACCGATGCTTTTTT # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56991-56660 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000039.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 56990 26 100.0 35 .......................... CCGAGTCTGTTCACTCAAACGATGCTGAACTGAAA 56929 26 100.0 35 .......................... CCGACATCAAAAAACCCTGTGTTTCTCTCGTAATT 56868 26 100.0 35 .......................... CCGCATTTAGTCACGGCTAATTTGCACGGGCAGAA 56807 26 100.0 35 .......................... CCGCACAGGATTACCTCCGTGATGTAATTTTCCTG 56746 26 100.0 35 .......................... CCGCGAATCATTTAAAAATGCTAACATGAACGCGT 56685 26 96.2 0 ...................C...... | ========== ====== ====== ====== ========================== =================================== ================== 6 26 99.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAG # Right flank : CTGAATATGTAACTTGTTCTCCTAAACTAACATTGCTAAAAAAATAGGCATTGATTCTACAGTCAAAAAACTTCGCCATAAATATGGAATCGGTACCTCAATTTTTCTATAAATGGCGAGAAAATACAGTGAAATGAAAACATCAGAAATCAAACTTTTAAAAGAGTAAGAAACAAAATCGAAAGTTTAATATGTTTATATTTTTCAGCTGATTATTGATATGTAAACTATTGACATAGTGACGAAACTGTATTTCCAAGGCAATTAAGTATATAATACCTTGCAAATTCAATTAATGATTATTACTAAACTTATACTTTTATGAAATCTTCAATTATCAGTAAGTTAGAAGCTCTACAAGAGCGTTATGAAGAGGTTCAAGCATTATTGTCTGACGCATCAGTTATCGCCGATCAAAATCGTTTTCGTTCTCTTTCTAAAGAATATTCACAATTAACCGATGTCGTTAAATGTTTTACTGACTGGAAACGGACGCAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1425-850 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000051.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 1424 26 100.0 35 .......................... CCGAGAAACTGCCGAAGTGGTTATATTATTTTGTG 1363 26 100.0 35 .......................... CCGAACAAGAATATCAATCATGCGGTTAGGCTATC 1302 26 100.0 35 .......................... CCGATCTCATCTGCGTAATTTCGAGAATGTGATTG 1241 26 100.0 35 .......................... CCGTTAATATTTACTTGGAGTATAAGTGGCAACTA 1180 26 100.0 35 .......................... CCGTGGGTTGAAGTAAAAAACACCAAATCCAATAG 1119 26 100.0 35 .......................... CCGCAAGGCTTTGCGCTTCTGTTCGTATATCACCG 1058 26 100.0 35 .......................... CCGATGGTCGCTATTCCATCGATAGTCGGTTTAAT 997 26 100.0 35 .......................... CCGACAGAAAAATACGAGATCGCTAAAGTCAAAAT 936 26 100.0 35 .......................... CCGGAAAAAATGGTTTTACACGTGATAATCCACAA 875 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== =================================== ================== 10 26 98.8 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTATTTGAAGAAGAAAAGCAACAACAAAAAGCGCTTATTGAAGCGGGATTAGATAAACTTGGCATCACCGAGCCTTATCAGCGAGACTCTGCCATGAAAAAAGTGGACGAAGCGCACGAACATGTCAAAAGCAACTGGCAACTAGAAAAAGAAGAGCGCATTAACCCGTTATTCTGTATTAAACAATCGATAATAATTCAGAGGATAATAAACCTTGTATGATCGTAATTGTGTAAAAAACACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAGCGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : CCCTTTATCTTAATGCGAAAACCCTAACCCCACTTAATTGATAAAATTTTAAGTGGGGCTTAAAAGCAGCAACCTAAAAAAACATGACTCACTAAGCTTATCTTAAATTTCAATAAATTAACTTCAGTTAAATATTGCAAATTGTGTAAAAATCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAGCAGATAAATATGACAAAACTAAATAAGTAGCAAGGTAGTATAGTTAAGGATGTCACGATTGTTAGTATATCAAATGCCCGCATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCCTTACGGTTTGGTTTTCTAATAAAAACAAAGCAATCACGCTATCAATGTAACAATCCTCAACGCCAGATTTATGGCTATCTATTCATGCCCCCCCTTAAAACAACTAATCATTAATCCATTTAATGGGGTAAAACGCACTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 799-222 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000065.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 798 26 100.0 35 .......................... CCGGATTCTAAAAAAGAATAATTTTTCAAAAATTT 737 26 100.0 36 .......................... CCGGATATTCAGTCTGCATATACACTCGCAACACTC 675 26 100.0 35 .......................... CCGGTGCAACATCTAAACGTTTTGCTAGCTCGGTT 614 26 100.0 35 .......................... CCGCATTAGATACAAAACCGACGGCAATTATATTG 553 26 100.0 35 .......................... CCGGGCTATCAATTTGCAGAAGCGGGGGTGAGCGG 492 26 100.0 35 .......................... CCGTAGAATTAGTGATGTGATGGCTAAAACAAAAA 431 26 100.0 35 .......................... CCGCTAGCAATTCAAAGATTAAGTGACTCGTATCT 370 26 100.0 36 .......................... CCGCATAATCTAGTCTGACGAGGTCGTTCAACCGCT 308 26 100.0 35 .......................... CCGGAAAAAATGGTTTTACACGTGATAATCCACAA 247 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== ==================================== ================== 10 26 98.8 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GAACATGTCAAAAGCAACTGGCAACTAGAAAAAGAAGAGCGCATTAACCCGTTATTCTGTATTAAACAATCGATAATAATTCAGAGGATAATAAACCTTGTATGATCGTAATTGTGTAAAAAACACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAG # Right flank : CCCCTTTATCTTAATGCGAAAACCCTAACCCCACTTAATTAATAAAATTTTAAGTGGGCTTAAAAGCAGCAATCTAAAAAAACATGGCTCACTAAACTTATCTTAAATTTCAATAAATTAACTTCAATTAAATATTGCAAATTCTATAAAAACCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAGCAGATAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30326-30534 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000063.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 30326 26 100.0 35 .......................... CCGCATAGCGGAATATCATTGCCATTCAATCCTTT 30387 26 100.0 35 .......................... CCGTAAAAAAAACAGATCATCTGCATATCCCCCCA 30448 26 100.0 35 .......................... CCGCAAAATTGAAAATTAGGAGGTTTTATGTCATT 30509 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 4 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AACTTAACAGGCTATGCTGGAGGCATTGATAAAAAAATTAAGCTACTACAAATTGAAGGCATTGATACTCAAAAATTTTATCGCCCAACTAAAGGAACAGCACTTTAAAACAAAAATATAATTCAGCAAACTATAAAGAGAAACAGTAAATATCTACTTTAGAATATTTTAGCTTTAATTGAATAATAAATATTAAATGATCGCCAGATCGGATTAATTAATATTTTTAGCATTTATACCGTTAAAATTAAAAAGTTTCTTAATTTTCAAATTGAAACAAATATTTTGATTAAAATTTTTTATTTAGATACAATAAAATTTAAATATCCTATTGAATTTAAATTAAAAATTGGTAATTTTTGGTAGAATAGCATAAATTGAATTGAGCTTGTTTTTTATTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTCAAAAAATCTGGTAGAATTTATCACCTACTATAACTGCAAATAAAACAGATAGATACGATTAGA # Right flank : ACCGGCTTTGCACAGCTTTCCAATACCATTGTCAGCAAATGGTTAAGGTGCTAGCTTCTTTGTTGATTGGTTATATTAATTAAATATCACACAATGCGCTGACAACTAAAGTTAACCTGTCAAATACGAACATTTGATAATGTTCATGCCTTGTTTAGGAAAATCACAAATGATTCGAAAAACTGGACGAGCATAGAAGAGGCAATTCCCATGCGACCACTTTGTTTCTAGCATCTGCATCGAGATTGTAAAGAAGGTTCGCCAAACTCTCTGCTCAGACATTACCAAAAAATTAATTGTATTTCGCAAAAGATAAAAACGCCTCAAATCCTAACTGTACTGAAAAATTTAAAGCTTACAGCAAATGGTTGCCATTTTAAAACAACGCTAACTAATGCCGTTTAGAGTTTATTTCTGTATATAGAGAACACGTTAATATGGTTATGAATAAAAAAGGATGCTCCTTGATCAATAAATTAATTATTTTCTATGATTTTTAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48853-48398 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000063.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 48852 26 100.0 35 .......................... CCGATAATTTAGAAAAAGGTTTGTTGGATGCTATT 48791 26 100.0 35 .......................... CCGGTTTATCTTTAACTGATTGTAGTGCTCTATAA 48730 26 100.0 36 .......................... CCGAAGTTACGATTGACCAGCTAGTCTATAACCAGC 48668 26 100.0 36 .......................... CCGTTGTGCGGCAGTTCTGCAACTGTTTAATATTGT 48606 26 100.0 35 .......................... CCGGCAAAGAATGGAACTCGGAAATAAATCCGAGC 48545 26 100.0 35 .......................... CCGGAATTTGCGGATATTAATGTTGTTGATTCTTT 48484 26 100.0 35 .......................... CCGGGAACTGGCACAAGAGATAAATTTACATGCCC 48423 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 8 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AATAATCAATAATGATAACTAAAATTGGGCATAAAAATTACACGATTTTTACACAATTTGCAATATTTAATTGAAGTTAATTTATTGAAATTTAAGATAAGCTTAGTGAGTCATGTTTTTTTAGGTTGCTGCTTTTAAGCCCACTTAAAATTTTATCAATTAAGTGGGGTTAGGGTTTTAGCATTAAGATAGAGGGAATATCTTTTCGTAATCAGGAGTAAACCACCAATAAAAAAGGGAATTAATCTAAAACAGTTATGATAAATCTTGTACCAATACGAAAACAAAAGGTGATGTTTTTTATTTAGACTCAATCAAATACTGCATCTTATTGAATTTAAAATAAAAAAATTTTTTTATTGGTAGAACGGTAGAAATTAAAACAAGCCTACTTATGACTTTTTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTATCGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : TTACCCTAGAATCTTTCACATTCGCTTCAATTTTACAAAAAAGCGGAATATTGCTATACTTATCTACTTAATTTCCACGAAAAGGAATTGTTTTGTCGATATTCATTTAAAATTTAACTTACCGACATAACAACAGTTTTTGCTTTTTTATTATCCTCTATTTTTTATCTTTGCTTGATTTTTCGTCAAATTTAATTAATTGAAACACATAGTTAATATGTAATTTAAAACGTATTTATTCTGTATTAATAAGTAACCGATTTATTTTGTTGCATTATTCCTTTTCTTTTATTTGCATAAAAAAGGCGGTATTTTATGAATAAAACAATAGACTCTAAAAATAAACCCTTAAGTATAAATGATATTACCATTATTGATGATAGTAAGTTAAAAAAAGCGATAACCGCAGCAGCACTCGGGAACGCTATGGAATGGTTCGATTTTGGGGTTTATGGTTTTTTAGCTTATGTTTTAGGGCAAGTGTTTTTTCCTGATGCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 384-836 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHF01000083.1 Gilliamella apicola strain Choc3-5 Gilliamella_apicola_Choc3-5_contig84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 384 26 100.0 35 .......................... CCGTAATGCAGGAACTGGTCGCAAGGTCGGTGTTT 445 26 100.0 35 .......................... CCGAAAATCTTTACTTGCAAATATCGCTCAAGGAA 506 26 100.0 35 .......................... CCGTGCCAGTTAAATATCTAGATGCGGTGAATTTT 567 26 100.0 35 .......................... CCGGGATGAGTGCGCAAGCAATCGATGCATTTTTT 628 26 100.0 35 .......................... CCGGTAAATAATATGACAAGCCATGCATTAATATC 689 26 100.0 35 .......................... CCGCTCCAAAATCTGGCTCTTGTTGTTGTTTTTGT 750 26 100.0 35 .......................... CCGGAAAAAATGGTTTTACACGTGATAATCCACAA 811 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== =================================== ================== 8 26 98.6 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GAACATGTCAAAAGCAACTGGCAACTAGAAAAAGAAGAGCGCATTAACCCGTTATTCTGTATTAAACAATCGATAATAATTCAGAGGATAATAAACCTTGTATGATCGTAATTGTGTAAAAAACACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGAAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGAG # Right flank : CCCCTTTATCTTAATGCTAAAACCCTAACCCCACTTAATTAATAAAATTTTAAGTGGGCTTAAAAGCAGCAACCTAAAAAAACATGACTCACTAAGCTTATCTTAAATTTCAATAAATTAACTTCAATTAAATATTGCAAATTCTATAAAAACCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAGCAGATAAATACGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTATAGGTAAGGATGTCTCGGTTGTTAGTATATCAAATGCCCACATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCCTTACGGTTTGGTTTTCTAATAAAAACAAAGCAATCACGCTATCAATGTAACAATCCTCAACGCCAGATTTATGGCTATCTATTCATGCCCCTTAAAACAACTAATCATTAATCCATTTAATGGGGTAAAACGCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //