Array 1 1-627 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMLW01000171.1 Fulvivirga kasyanovii strain JCM 16186 Contig_249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1 28 93.3 36 --............................ CAAAATCAAGAAAGCCTACTACAGGTACCGGAAGAA 65 30 100.0 36 .............................. CTACCTCTTCGTCTGTCATATTGTCGTTTGTTAGCA 131 30 93.3 41 ............................NN NNNNNNNNTTGGTTTTTTGCTGGTTGGCAAGGTAGTTTTGG 202 30 100.0 35 .............................. CCGCTGCGATAGTTAGTAACAAACTAAGACTTGAG 267 30 100.0 34 .............................. CCATTTGGATATGAAAGATCAATCTGCGGGTGTA 331 30 100.0 37 .............................. CTGGCTTTATCGACCATGTATATCTCACCGGTTTGTT 398 30 100.0 35 .............................. CCGCCACGCAGGTTTTAGAAGCCATCAACGATACA 463 30 100.0 37 .............................. CCAAATTTGCCCGTCGCTGAAACTTACGTTTGAGGCT 530 30 100.0 38 .............................. CCAGGATATGTACCGGAAGCACTAGTAGAAATAGACGA 598 30 93.3 0 ............................NN | ========== ====== ====== ====== ============================== ========================================= ================== 10 30 98.0 37 CTGCTAATCGTACCTGAGAGGAATTGAAAT # Left flank : | # Right flank : NNNNNNNNNGTCATGAACGTTAAACTGCTAATCGTACCTGAGAGGAATTATCAGGGGGCTTAATAAACTTTATTGCCATCTGTATAAATGATCAAATAATTTGCTGTTAAATTGGGGAGCCCCGTATGAGTTTCAAGTAATGCAAACTTATGCCACAACCAACCATTCCACTGCAATCCCAGGGAATCTACCACATCTACACCCATGCCAATGGCAGCGAAAACCTATTCAGGGAAGATGAGAATTACCGTTATTTTCTAAGGAAGTATTCAGAATATATCCACCCCATAGCAGAGACATTTGCTTATTGTCTGATGCCGAACCATATCCATTTTATGGTTCGGGTGAGGGGGGAAGAGAAGGTTCTTGATTTCTTAAAATTGAAAAAACCAACCCTCCAAGGGTTCGAAACCCTTGGAGGGTTTTCAATGGCAGTAAGCAAACAATTTTCACATTTGCTCAATGGCTATACTCAAGCCTACAACAAACGCTACAGCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTAATCGTACCTGAGAGGAATTGAAAT # Alternate repeat : CTGCTAATCGTACCTGAGAGGAATTGAANNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 366-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMLW01000053.1 Fulvivirga kasyanovii strain JCM 16186 Contig_542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 365 28 93.3 35 --............................ CAATGATGCTCAGGCGCAACTAGATGGCGCTTATG 302 30 100.0 44 .............................. CACGTTCTTTCCTTGCTTTCTCTGCCTCTTTCTTCANNNNNNNN 228 30 93.3 36 NN............................ TCTGTTTAGCGATTGTATATATAGTTAAGAAACTTC 162 30 100.0 36 .............................. ACTACAAGTATTACCATTTTCTCCGGGTATTTTATT 96 30 100.0 36 .............................. ATCATGGTAAGAAAAGGAGAAAAGGTCCAGGCGCTT 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 6 30 97.8 38 CTGCTAATCGTACCTTGGAGGAATTGAAAT # Left flank : | # Right flank : T # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTAATCGTACCTTGGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 440-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMLW01000065.1 Fulvivirga kasyanovii strain JCM 16186 Contig_861, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================================== ================== 439 29 96.7 36 -............................. GAATTTGAGGAAGCCATGGAGCGTGAAAACTCACGT 374 30 96.7 131 .............................C CAAGCTTTTGCCAGTGGGGTAGGTTAATGCGGTTTGGTTCACGAGGGGTTTGTGCGGCATGGAAGTGGGTACGAGTAAATGGATTTGGAGGGATACACCCTCTGCCTGCGGCATCTCCCTCGAGGGAGAAC 213 30 76.7 38 T.AG.G.CT.C................... TCGGCTACCTGGGTTTCTATACCCCGGATAGATGGAAT 145 30 100.0 35 .............................. TTCATTAGTATCTGTTTTTAGTTTGTTGTTTTGGT 80 30 90.0 0 TC...T........................ | ========== ====== ====== ====== ============================== =================================================================================================================================== ================== 5 30 92.0 60 CTTTTAATCGTACCTGAGAGGAATTGAAAT # Left flank : | # Right flank : TTTTTGATTTTGCTGAACCAATCCGCAGTGAGGACAGGCTTTTAATCGTAC # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.54, 5:-1.5, 6:0.25, 7:-3, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCTGAGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMLW01000038.1 Fulvivirga kasyanovii strain JCM 16186 Contig_978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 1 30 100.0 37 .............................. AGCTCATGGGCTAGCCAGCTACTTGGCCGCTGTAGCC 68 30 96.7 35 .....T........................ GACGTAAGCAAGAAAAAGCGTAATGTAGTAGTTGA 133 30 100.0 37 .............................. GTTGATATTGCTATACTTGATGACGTTGTAAAGGACC 200 30 93.3 47 ..........C..................C CAAGCNNNNNNNNNNATCTATCAGGAAAGGGCTTGCATCCTTGTTTA 277 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 5 30 98.0 39 CTTTTAATCGTACCTGAGAGGAATTGAAAT # Left flank : | # Right flank : | # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCTGAGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8462-8101 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMLW01000614.1 Fulvivirga kasyanovii strain JCM 16186 Contig_631, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8461 30 100.0 37 .............................. GGGCTATATGATCCGTCGTTTTCATCAACATACACAC 8394 30 100.0 37 .............................. CACACTTATAACCCCGGAGAAGTCATGAAAGCTAAAT 8327 30 100.0 35 .............................. GAATTTGAAAATTGCAAATAATTGTTGGTTACTTA 8262 30 100.0 36 .............................. TGATACAATAACCGCAGATCAGGTAAAATTAATACA 8196 30 100.0 36 .............................. CGGTTTCAAATCTCATAACACCTCTATGTTTTTAAT 8130 30 86.7 0 .....................GT..C...C | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 CTGCTAATCGTACCTTGGAGGAATTGAAAT # Left flank : TCCTGAAATCATTATGCTGGATATCAATATGCCAGAAATGGACGGTTGGGAATTTTTAGAGGCATATCAAAAGACGAGTTTTGCTTTAGACAGTGATTGCCGGTTGTATATACTTACCTCATCGATTGCACCCGAAGATCAGGATAGGGCCACCACTTGCCCTTCAGTAAGCGGTTTTATTTCGAAACCATTGACTATGGAGTGGATTGAAAAACTATAAGACTATATAACCCTCCAAGGGTTTGTAACCCTTGGAGGGTTATAGTTAAAATATATACATCTGTCACCATGTTAGTCGTCGGTCATGTATTGTGAATGTATTATTGATGTCACAAATCTCAATACGTTGTGCAATTATCTGTAAATGAGTGATTTAAGAAGTCGTCTAACCCCGGTGTAAATTATATGATCTGTGGTTGACGATGTAAAGGGTGGAATAAGTCTCATAAAATGTTGCTTTAGTTAGAAATTGAGTTGATTTTTGTTGTATATCTTAACGG # Right flank : CCTTGGAGGGTTATGAATTGACGATTAAAATAGGCATAAAAAAAACCGCTTAAATTTACTTTTAAGCGGTTTTGAGGGTTGTTTGACTTGCGTCTTGCGGTCTGGACGGGACTCGAACCCGCGACCTCCTGCGTGACAGGCAGGCATTCTAACCAGCTGAACTACCAGACCATTTTGATTTTCCCTATCGTTTAAGGGGCTGCAAATGTATAATTCCAAATTTTATTATGCAATACTTTTGGCAAAGTAGAGAGAATATTTTTTTAGCTCCTTTTACAATAGTAATAGCACATCCGTTACACAACAAAATCTGATACTGTGGGGCTGCGGAAATCTGTTTTCACTATAAATGGTGATTTCCCAAAACGGTTAGAAATGGTGATTCCATTGGAAAGCTAAAAGGACAGCTTTGTGGCAAATTACAATCACTAAATCAATCTTTCGTATGAAAAAGTATTCCGTTTTGGTATTACTCCTGGCAAGTTTCGTTTTTATTACCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTAATCGTACCTTGGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 14836-14477 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMLW01000508.1 Fulvivirga kasyanovii strain JCM 16186 Contig_982, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 14835 27 96.4 38 -........................... GGTGACCAATTAATTTCACTTCGTTTAGTGATGCCAGT 14770 28 100.0 42 ............................ ACGACATCTAAACCAATATCGATAATCGGCTTACNNNNNNNN 14700 28 92.9 38 NN.......................... TCGGCTACCTGGGTTTCAATGCCCCTGATAGATGGACT 14634 28 96.4 37 ..............A............. CCCGGTTTTGTTGGCTACCACCAACCCTCCGATAGGT 14569 28 100.0 37 ............................ AATGTAGCGGTAAGCTTCTGCATTGCGGTTTGGGTGG 14504 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================== ================== 6 28 97.6 39 TTTAATCGCACCTTGGAGGAATTGAAAT # Left flank : | # Right flank : GACCATGTCCCGGTACGTTTTTGAATCAGCTTCNNNNNNNNNNAATCGCACCTTGGAGGAATTGAAATGACAACACCAAAACAGAGGTTGAGATCGGGGATCCGNNNNNNNNNNTAATCGCACCTTGGAGGAATTGAAATTGCATATGAAACCCGAATGCGAAACCATTTTAGAGTCAGTTTTAATCGCACCTTGGAGGAATTGAAATTGTACTGACACAATTGTTTAGTGACAGGATGAACATAGTTTTAATCGCACCTTGGAGGAATTGAAATCGGCCTAGACATGGCAGGCTTAACTGCATCTATCNNNNNNNNNNTTTAATCGCACCTTGGAGGAATTGAAATATACCGGCAGGTGGTTTCATTTCCTTGAACTTTCGCCGTTTTAATCGCACCTTGGAGGAATTGAAATCACTCCAAGTATGTCAACGTCATTGTGAACGTTAAATAGCTGTTAATCGCACCTAGAAGGATTGAACCCTAACTGCAGCTCGGGAG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAATCGCACCTTGGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //