Array 1 2193157-2191908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXVT010000001.1 Escherichia fergusonii strain RHB03-C11 RHB03-C11_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2193156 29 96.6 32 ............................C GAGGTGCCGCCAGTGTTATTTGATGCGATTTT 2193095 29 100.0 32 ............................. CGCCATATCCCATGCCATGTATTCTCTATCGC 2193034 29 100.0 32 ............................. CATATCAGGTATATCGTAACGGCGGGGCCGAC 2192973 29 100.0 32 ............................. ACATCACGGTCAGCACAACGCCTGTTGCCTCT 2192912 29 100.0 32 ............................. TTGAAATGGCGATGATGGAATACAACGTGAGT 2192851 29 100.0 32 ............................. GCCCAGGGATTCCGCTCGTTTTCATCAAAATA 2192790 29 100.0 32 ............................. TCGCCCTGGCTGAGCTGATGCGCATGGACGAG 2192729 29 100.0 32 ............................. GGCGCTGATTGAAGTCACGCGGTAAGTAAAAG 2192668 29 100.0 32 ............................. GGCGGGGCGGGGTCGGTAGGCAAAATCCCGGC 2192607 29 100.0 32 ............................. ACATAATGCTCAGCGTTCCCCTCATCGGTCCG 2192546 29 100.0 32 ............................. TGGTACCACGCGTTTATGGTCGACGGTGTCGC 2192485 29 100.0 32 ............................. CGCAAATGCTACAAAAACCCCATCAGGCAATT 2192424 29 100.0 32 ............................. ATGGCTGGATCATGGTTGTGATGGGATTTACC 2192363 29 100.0 32 ............................. CTGGTATTTTCGACATTATGCTCAAAAACAGA 2192302 29 100.0 32 ............................. TTGGGGTTTTTCCGTATATGGGGGCAACCATC 2192241 29 100.0 32 ............................. AGTGAGTCTCGTCGTCGTCGTGCATTGCGGGA 2192180 29 96.6 32 .T........................... GGAATCTGACAATACGGCAAAGGTGACTGTTG 2192119 29 96.6 33 .T........................... AGTCCTTAACCTCGGTACTAAAACGGTTAATGC 2192057 29 96.6 32 .T........................... CCTCTGGATTACTACCGATAACTAACACTGAA 2191996 29 96.6 32 .T........................... GTAATGCACTCACCACGGTTACAACAGATATT 2191935 28 79.3 0 .T..........T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTAGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : AGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2219917-2218664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXVT010000001.1 Escherichia fergusonii strain RHB03-C11 RHB03-C11_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 2219916 29 100.0 32 ............................. CGAACGCATGGTCCACACAGAGAGCCAGTGGA 2219855 29 100.0 32 ............................. ATCAGCCGGAATCTCTCGCCCCAACAGCAGCA 2219794 29 100.0 32 ............................. TATTTGTTATAGCATAGCGAGACACAAATTAA 2219733 29 100.0 32 ............................. GCGTGAAAGTTAAATTCCTGCTGGACCAGCAA 2219672 29 100.0 32 ............................. TTATTTTTGCTTTCTCTGCGCAATACGTTCGC 2219611 29 100.0 32 ............................. ATTTGCCTCATATGCCTCTGAGTCAAAGTTCG 2219550 29 100.0 32 ............................. CCCTGTTTTCACATGTTTTGTCACGGAAAAAT 2219489 29 100.0 32 ............................. CTGGGCGCTCTATTTATTGCACGGATGTTATG 2219428 29 100.0 32 ............................. GGCCGTCGCTACCCAGTTAACACCCATCAGAA 2219367 29 100.0 32 ............................. CGGGTGGCAATAATGGAAAAAGGGTGGTTTCG 2219306 29 100.0 32 ............................. CCCCATCTAGCCATACGCACCCCTGGAGTCAA 2219245 29 100.0 32 ............................. AGTGAGCAAAATTATTGAATTACCCGTTGAAC 2219184 29 100.0 33 ............................. GACCTGGAATATCGTTTCGGGCGCTACTCTTAC 2219122 29 100.0 32 ............................. GTCAGGATTTGGAGAATATGTCTCCAGTAGAC 2219061 29 100.0 32 ............................. TACAGTACCAGGCGGAGATTACCCGTTTTGAG 2219000 29 100.0 32 ............................. AAATCAATCTATAGCGTCAGTAAATGGAATTA 2218939 29 100.0 32 ............................. GGTATAGTTCCAACATACACGCCTATAAAAGA 2218878 29 96.6 35 ............................A CCGTTTATTCTTATCGCTGGCGTTAACGTCCACAA 2218814 29 93.1 32 .........A..T................ CCGAAAGTGGGCGACTACGCGGTCAACGAAGA 2218753 29 100.0 32 ............................. GACACAGAGCGCCGCTATAGCGCCTATGCCAA 2218692 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= =================================== ================== 21 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTTCTTTAGGATAACGGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATGAATCTCGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTACGATTCGCGTAGTCTTTTATTCTAAGGACATCGATTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTATAATTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //