Array 1 2184615-2186814 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPHM01000001.1 Haloplanus salinus strain JCM 18368 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 2184615 30 83.3 34 ..C.........T........AC...A... GCGTAGGCAGCGACCAGACCGGATATACGCCGAG 2184679 29 80.0 35 .......T.......-A..G.A....A... GCAATCGACATGCACCGAGAGATTCATCAACTGGA 2184743 30 83.3 36 .......T.......A...G.GC....... TGGCTCGACGAACAGGCCACCGTCTTTCAGAACGGT 2184809 30 93.3 35 .....T.T...................... TTGTCCTCGATGCGCTTGGTCTGGATCTGCTCGCC 2184874 30 86.7 35 A......T....G........C........ CACGGTGCAAGGACGCACAGCACGCTAACCAATCA 2184939 30 90.0 36 .......T.C...........C........ GCGGAGTACGGCGAGCTGGTGGACCGCTAACTGGCT 2185005 30 83.3 37 .......T.C.G..T......A........ TATCCTGATCGAATGTGGTCTGAAGTGCTTTATGGGT 2185072 30 90.0 37 .......T.............C..C..... TCTCGAATTGGCCCTCGTAGATGCCCTCGTTGGTGAC 2185139 30 100.0 43 .............................. GGTCGCCAGCCAGCGCGGACAGGGCGGCGAACGCCAGTGCGAC 2185212 30 96.7 37 .......T...................... GGTCGCCAGCCAGCGCGGGCGGGCTGGAGAGGTCGTT 2185279 30 96.7 35 .......T...................... CAGCCTCTCTTGAGTTGTTCTTACCGTCGACGAGT 2185344 30 96.7 37 .......T...................... GGGCACACACGTCGACCGGGCGAGAGACGTTCCGGAC 2185411 30 90.0 35 .......T....G........C........ GACGGGCGGTATCGGCTGGCGATCGTCAACCCGCA 2185476 30 93.3 34 ............G........C........ CAATGCCCCGAGTTCGGACATACGCTGGAAACGT 2185540 30 86.7 38 ............T........AC....G.. TGGTTGTGCGGTCGGACGTTGTGAACATCCTTCCGCGA 2185608 30 90.0 34 ...............T.....AC....... TCGGCGTCGCGAGGTCGCGGCCGCCGCCGACGTA 2185672 30 83.3 36 A......T.C...........C....C... CGGTAGGTCCGTCTTTGCCGCGACGTTGGTCATGAC 2185738 30 90.0 35 .......T.C...........A........ TGTCGAACGATACCGTGGGCCTGCGTTTCGATGGC 2185803 30 96.7 35 .......T...................... TGCGTCGGTCGTGGTGTCGGTGTCGGTAGTCATGC 2185868 30 100.0 37 .............................. TCGGGACGAATGCTGACGCCGACGTGAGCCTCACGAG 2185935 30 100.0 36 .............................. CCTCTTTTTCGGCGGCATCGGGGCGGCCTACTACGC 2186001 30 100.0 34 .............................. CGGTTTCGCCCATGTTATAGCGCGTTATAACGGA 2186065 30 100.0 37 .............................. TTGGCGACATCGGGGAGGAAAAGACCTCGAAGGAGCA 2186132 30 100.0 36 .............................. CGTTGCGCGCCGCCGACCGCATCCGTCGCAGGTGCC 2186198 30 100.0 35 .............................. CTGCGACGAGTCTCCCCGATACGAGCGTCGTGGTC 2186263 30 100.0 35 .............................. GTGGGCGCCGCCGGCACTGCCCCGCAGCGCTTCGA 2186328 30 100.0 35 .............................. TCCGCCGAGGCGGGCGTCCGGCGCGCGTCCGGGTC 2186393 30 100.0 34 .............................. CGAGCCACTCGACGCCCGGGACCTGGAGGTCGAG 2186457 30 100.0 34 .............................. ACATCGGGTTCGCACACGCCCACGTGCGCTTGGT 2186521 30 100.0 36 .............................. CGTCACGGTCGCGCCCTGTTGGCCGGCAAGCGCCGT 2186587 30 100.0 37 .............................. GCGGCATCTCCGCGTCGTGAGTGGTTCCGGTGATGCC 2186654 30 100.0 35 .............................. AAGAGCAGTCCGAGCGCCGCCCGGACGGTCACGCC 2186719 30 100.0 36 .............................. GACCTTCCCACGCTCCCGACGCAGTGCTTCGGGTGA 2186785 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 34 30 94.4 36 GCTTCAACCTCACAAGGGTAGTTCTGGAAC # Left flank : CGACAGTCTGCAAATCCTGTCACGAAGAAATACATGGACACAATATTCCCACAGGCGGTGACTTTTCTGAAAACAAAAATACCACCCCGAAGACAAGTCGAACGCAGCCAACTGGCGCAACCAGAGGTCAAAAGACAGTTGAGAGCAGTATCAAAGAGTGGGGACTCCCAGAGAGGATTATAGTTGTCACTTGGTTACTTTCAGGTATCATAGGGGGTCCTATGGTGGTTTCTGGTCAGGTCACTGGTGCGATTGTTTTCGTGATCTTCATTTCGGTAGTATGTACTTTGGTTGTAAAGCTACTCGGCAGAAAATCATCGGATGTGGATTCTTAGGACTGTTCTGATCGGGATGAGTAAGATAAGTCATGCCTACCCACATTTGAACCTTTGAATTAACGACATTGATTCCTCGGAAAAGTCGACATCATGTATGATCCGTCATGCCTCCACGTAGATCTGAAACGGGCGTATCTGAACACTAATTGGTATTAGTTGCGT # Right flank : CCATGGCCGTCTGACCACGTACAGCGGCTCTATTCGTTGATTCTACTTCGGTGTTTCCGTCGACCTACAATACCCGCTCAACCCCTGGGGGTCGATGGAAACAGGCTACTCGATACTCAGCCGGCCTCCCCTCCGGAGCTGATAGATCGACTCATCGCCACGAGCATCCACGTAGTAGAGATGACTTCGACCGGAGAGTGGGACAGCACCGGTGGCTTCTATCGTCGCCTCATCACATGGCACGGACACCTGCCGCTGCTGGAGTGCGTTCTGGAGGCCTCGAAGACGACGATATCTCCCCTCTGCGACCAACCTCTCGTGGGCGTCGAATAGATTCCGCTCGTTCTCGGTCATCCCTACTACAATATCTACCTGCTCGCGCTCGTCCGGAATCAGAGACTCCTCTCGGAGTGATGCGAACTTCGCTGCTTCTGCGTCAGCGACCAGCTCTCGGTCTCCAGGCTTGGTCTCGGAGTGAAGTAACTTGAAGTAGCGTTCAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACCTCACAAGGGTAGTTCTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //