Array 1 11436-12376 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGN01000003.1 Gilliamella apicola strain wkB308 Gilliamella_apicola_wkB308_contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 11436 26 100.0 35 .......................... CCGTCGGTATAATGTGACTAAAATTTAATGTATTA 11497 26 100.0 35 .......................... CCGGCATTTTCCAGTTGAGACGGCAACTGAACCCC 11558 26 100.0 35 .......................... CCGTCAATTTTTTTGGATCCTTAACGAGGTTAATA 11619 26 100.0 35 .......................... CCGAGGCCTCGGAAATCGAGGCTGTAATGAGTTGG 11680 26 100.0 35 .......................... CCGAATTTTTTCCAGTTCCCAAACTGTCATATCCG 11741 26 100.0 35 .......................... CCGAGTATGCCGATCTAACTGCGCAAAATGCTGAT 11802 26 100.0 35 .......................... CCGATTTTGGGGTTGAGTTATTTTTTGGTACACTT 11863 26 96.2 35 C......................... CCGAGGTGACGGTGTATGGCATTATTGTGGGGTAT 11924 26 100.0 35 .......................... CCGATTAATAGTGCGTTGGTATCCGCTCAAAATAG 11985 26 100.0 35 .......................... CCGTACGTTAGGATTTGCAAAAATGATTCATGAAA 12046 26 100.0 35 .......................... CCGAAATTAAAAGTATTAGACCAAACGACACTGTT 12107 26 100.0 35 .......................... CCGATCATTTTTAAAATGGGTCGGGGGAAAATCAA 12168 26 100.0 35 .......................... CCGAACTAATTGATTTTAGTGATTGCGGCGGAGTT 12229 26 100.0 35 .......................... CCGGAATCGCCTTTAGTTTTTTGCACGTAAACACG 12290 26 100.0 35 .......................... CCGCATATTTGTTTTTTATTTGGATTAAATTTTAT 12351 26 92.3 0 ..................A......G | ========== ====== ====== ====== ========================== =================================== ================== 16 26 99.3 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTTTAATGAAGAAATCAAAGAAGAGTGATTAAACATTGTTAGTTTTAAATGGTGAAAAATTTGTGTTTGAAGCCCCCAAAATTGGTCTGTTTTTAATTAAATGGTGCTTAGGTCAAATCAGAGGGGATTATGACGTGACTATCCGGGTTAATTACTGGCCAGAAGGCAAGCAGGACGAGAGTGCCGACCAAAGTCAAAGTGATGACAGCAGCAGCGACCCGAACAAATAAAGCAAAGAGTAAGATTAATATTAAGTAGTACATTAATATCTTCCAACGAAAAGTTACATGTTACCTTGTTATCAAAAATTGCTCGGTACATTGGAAAAGTTGCCAAAGAGAGTACCGCTAAAAAAATTAAGCAAACATAGTTAACCATATGATAAATATAAAATTATATTTATATAACGTATTAAAATTAATCGCTTAAAAAAGCAACAAAAAATCGGTAGAATTTTACACCTAACTATTTTAATTAATAAACAATAAGTTATAATTAGA # Right flank : GTCAGCCTAAAGGATGAAATACTCATTCTATATCGCTTTATTTATTACTTGCTCATAACATAGAGTTATCGGTAGTGCTCAGTGATAATTTAAGAATTTCGTAGCAAGCCATTTTTATAAAAAAGCTTTAGCAATATTATAAAAATTGTGACAGTTACGACTTTGTGAACATCCAACGGAAATTAACCAACAGGATTTATACTGGTATTATCACTCTACCACGAGTAATATCACTGATGCTTTTTTGTAGTGAAAGCAATTTATCTTGCGTTATGGCAATATTGACGTTTACCCCAATGGCATCAAAATCTTGATTTTCAATCAGTGCATCCAGTTCTTTTAAGCGATTTTCTATAATTGGCCATTCATTATAATAGCAGTGAAATTGCAAAGGTATTCGGGCAATAAGTTCAATCAATTCTGCTTGTTGTAGACAATGACTTGCAGATCCACCATAGGCTCGTATCAAGCCACCTGTGCCAAGTTTGATTCCGCCAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 325683-325166 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGN01000037.1 Gilliamella apicola strain wkB308 Gilliamella_apicola_wkB308_contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 325682 29 100.0 32 ............................. TATTGCTGGTGGCTTAAAGCTTGTCGCTGACA 325621 29 100.0 32 ............................. ATGGAAACAATATTCTAATGAACGATATCACT 325560 29 100.0 32 ............................. ATCATTCGGATTACAAATACGATCGGCCTCAA 325499 29 100.0 32 ............................. CGTTTAAACGATGCAGAGGGCGAATTATCGAG 325438 29 100.0 32 ............................. GGTCTGCCATTCCACAGACGCTAACAATAAAT 325377 29 100.0 32 ............................. CGAATGATTGCCATTGTTTATGTCTCCATATT 325316 29 100.0 32 ............................. TTAAATCGTTAACAACCAATATTATGGTTGAT 325255 29 96.6 32 ...........A................. AATTAAATTTAACACAATCCGAATTAGCTAAA 325194 29 93.1 0 ...........A...............T. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCTATGCACATAGGGATAAACCG # Left flank : CGAAAGAAACCACCTTATCGGACTACCCACCAAAAGTACAACAAGCCATATTAGACAGCCGTTTAGAATGGGGCGTACGTGACGAAAAGACAGGCAAACTGGTGGATTATGGTAATGGTTAATGTGCAAAAATATTTTTAATAAAATTAGTTATCTATAAATAATAATGCGTACAGATTGTTAGTTTTGATAGTTATAGGATTAAACATAAATTGATGCTAAATACTTGCCCAAATAAAGGCAAGATCAGCATTTAACCATTCGTCAAAATCAATTACCGAAAAGTAAAATATACCATTGCTATCAAAATCGGTCGGTGCGCCGAGGAGTTGCAAAAGCAGGCTCTACTTAAAAATCTTTTTAAACATAGTTAACATTATGATAAATATTAAATTACATTCCTGATGCTTATTAAAACCAATCGCCTAAAAAAACATCAATAAATCGGTAGAATTTTACACCTCTCTATTTTAATTAATAAACAATAAGTTATAATTAGA # Right flank : TTGCTAAAATGTGTTCTAACAGTGAGAGAATAGGTTGCTTGATTCTATACACATTTTTCACGATCATAATCTAATACTTAGTATGGCTAATTCATTGATTAATGCATTAGGAATCATTTCAATTTTTCATCCATGTTTTCATAGAGCTTAATCGGCTTAATGGGAACTAAATCTCCATCTTTTACTTCACATTCGGAATTATTACTTGAAACAACCATAATCTGTCCTCTTTCTAGTTTAAAATCTAAAAGAGCTAATGCTCCCTCTGAAGCCAAAGCCACATAATCTCTGGCATCTGGAGGGAACTCGTAATAAACTACTTTGTTATTATATACATACACAGCTGTATTAGAGAATTCTTGAGCTATTCCATATCTAGAATTTGGAAAAGATTCTACTTTCTTAACATCAATATTTTTTTCTCGCATTAATATGATATACCTTCCACCAATACTGCCACTGATTAACCAAACTTCATCCCATTTAAAATTAGTATAATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATGCACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 326955-326681 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGN01000037.1 Gilliamella apicola strain wkB308 Gilliamella_apicola_wkB308_contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 326954 29 100.0 32 ............................. CATATCGCCCGTCGAACTCCAGGCCACCCTGG 326893 29 96.6 32 ............................T CAACTTACCGTATCAAATCCCATGAATTGCCA 326832 29 100.0 33 ............................. GGGCAGGGGGGCGACTTTAAAATAGATCTAGGC 326770 29 100.0 32 ............................. CTTTTTCATCGAAATTAAATTTACCACCAATT 326709 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 GTGTTCCCTGTACACACAGGGATAAACCG # Left flank : CACTGATTGAAGAGGTATTATCCGCTGGAGGTATTGAACCTCCACCGCCTCCTGATGATGTAGTACCACCTGCGATTCCAGAACCTCAATCACTTGCCGATAGTGGCTTTAGGAGCCATTAATCATGAGTATGTGTGTTGTGGTGACTGAAAATGTACCACCCAGATTAAGAGGACGCTTAGCTATTTGGTTATTAGAAATCAGAGCTGGTGTTTACATAGGTGATATTTCCAGACCGATAAGAGAGATGATTTGGCAACAAATCATCGAACTTGCTGAAGAAGGTAATGTTGTACTTGCTTGGGCAACCAATACTGAATCTGGATTTGACTTCCAAACTTATGGTACCAACAGAAGAGTGCCGGTAGAACTCGATGGACTCAGATTGGTATCTTTTTTACCTATTGAAAATCAATAAGTTAAAGTTCTTTAAAAATTAAAAAAATTTGGTAGAATTTTATGGTCGCTATAAGTTTAAATAAAACAAATAGCTACGTTTA # Right flank : TCTATATTCAGCGCCCTAAATACTGCGGTGGTACGGTGGTGTTTAAATGGGAACATATTATGCCGTCGAACTTTGGCGAAACAGGCTCGGATATGGGGGGTACCAATATGGTTAATTTAATGAGCTTTCACCCGTATAAAACCTGCTTTCCGATTGCTCACTCCGCCGGCATTGGCAAAAACACTTATAACCCACAAGACTATAAAGACGAATGGGAATTTATCCGCCGTTATATGGAGCACGGACGGGACAATCTGCCTAAACCCCGTTTAAGCACCCATTTACCTATGCCTTTCCACGGTTTTAGTGGTCATGTAAGCCCGATGATTCACGCAGCAAAAAATGCGCCTACTTTTTGGATGTATATTTTATTAATCCCAGTATTTTTAATTTTATTAACGTTTTACACCGTGGGCTACTTTATTTCGGAATGCTTGTGCTGGCAACCCCGTTGGCCGAAAGTGATTCGTCAAGCAGGAAAAACAGGCAAACCAGTCCCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 331724-332911 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGN01000038.1 Gilliamella apicola strain wkB308 Gilliamella_apicola_wkB308_contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 331724 26 100.0 35 .......................... CCGGAGCGTATAAAAAAATTACCGTTTGATGGCGG 331785 26 100.0 35 .......................... CCGGCGGATGGTTTATCCATGAGATCGGATTATTT 331846 26 100.0 35 .......................... CCGATGAATTTTATAAACATATGGATAGCCCAGAA 331907 26 100.0 35 .......................... CCGATAAATGCTTTTTAAACCATCAACTAACCCAT 331968 26 100.0 35 .......................... CCGATGACGGTCTGTCAACCTTGCTTGGTTCACCT 332029 26 100.0 35 .......................... CCGATATCAATTGCATTCAGGTGATTAACGAATAA 332090 26 100.0 35 .......................... CCGTTATATAAAATACATTTATTTAATATTTTAAT 332151 26 100.0 36 .......................... CCTGTCGACAATCGATGACGGTGTCGGAGTATCATT 332213 26 100.0 35 .......................... CCGCGAACGCAGTCGATCCGCTCAGTTTAGAGCCA 332274 26 100.0 35 .......................... CCGTTGGGGGGCAACCGAATAGCCGGCACCTGCGT 332335 26 100.0 36 .......................... CCGGAATCAGCTCTTCCTTCAGCTCTTCCTGATAAT 332397 26 100.0 36 .......................... CCGACGATTTTGTTTTCAACGAGCCCACTAACAACA 332459 26 100.0 35 .......................... CCGAGATGTTATCAGGATGTAAAAAATATAAAATT 332520 26 100.0 35 .......................... CCGTGGGGATCAACTATGAAACACGGCTTGAATTG 332581 26 100.0 35 .......................... CCGAGGCTTTCATTTCAATGATGGAGGGATTGAAC 332642 26 100.0 35 .......................... CCGGACGGACATTTTCACGGGATGAACTGGATCAA 332703 26 100.0 35 .......................... CCGTGAAATGTTTATTAAAAACTAAACTTTTTTTA 332764 26 100.0 35 .......................... CCGGGCGAGTTTGAATCAATTCAGCGTATGCAAAC 332825 26 100.0 35 .......................... CCGAGCGGGATTTGAGACAGTTACAAAATATCGTA 332886 26 96.2 0 ..............A........... | ========== ====== ====== ====== ========================== ==================================== ================== 20 26 99.8 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACATAGTTGAAAAAACATATTTTCTAGAGTGGAAAATGACTAGGTTCCATCTCAATAATAAAGGATTTTTTCCGTCTTTTGAAAGTCATTTTTGAAATTTTGATTTTTATATCTCAAGAAAATTAAGGCTAATGTCATGCCAATTATAAAAAAAGTTTTTGCATCACAAAAGCTAGATCAACTTTTAAAAAATAATAATATAAAAAGGCTCGATTACTAACGAGTAAAGACATAATAAGCCAAAAATTGACACAGTTAAGCCGTGCTACAGAAAGAATGACTAACGAATATGCTGATCAACTCACTATTGCTTGGTGCGAACAAAAATTACAGAAACGAATCTCGTACAAAATCCCTTACATATTACGCTTAATATGATGATAATATTATAAATTTAAGTCGATAATGCTCAGATATCGTTTGATTAAAAAAACAACAAAAAATTTGGTGGAATTTTTCACCTCCCTATTTTAATTAATAAACAATAAGTTATAATAAGG # Right flank : ACCACCTAATAATAGTTATCTATCCAACATAACCTAGGGTGAACTAAATCTGCCGACTATAGGCTTTTTACTTTACACTATAGGTCAAGCAAGCAAACCAAACCAATAAAACGGTGACCAAACAATTGGGTCAACAGACCATTACGGCGACTTGTGTGGCATTAACTGACAGAGTAAATATAAATTATATTATTGAAAAATTTGAAAAGTTATATTTAATTTGTTAATTTATGGTTTTATAAATTTTAATTTACAGGAAATATCACATGAAAAAAGTAGTTTTTAGCGCCATTCTGGCTTGTATTGGTTTTAATGTCTCAGCAAATGAAAATGCAAAAAGGATCATTGAATTTTTAATAGAAGATGATATAGAGGTGTTCAGAGAGAATGGAAAATCAGGCTTTATGGATGCAATGCCAACGGTTAGTGCAGCACAGCTAATCAAAGAATATGGTGATAACCAATATGTTTACGAAAAAAAATATGATAAAAATTTGGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334331-335460 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGN01000038.1 Gilliamella apicola strain wkB308 Gilliamella_apicola_wkB308_contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 334331 29 100.0 32 ............................. AGTTTTTAAAGCTTTGTCCTGCGTCATCAGCT 334392 29 100.0 32 ............................. ATAATTTACCATGAGCCTCTTTAAAGTAATCC 334453 29 100.0 32 ............................. GAGGCGGGTGCATGGGAAGAACAACAAGAAGA 334514 29 100.0 32 ............................. GGCGGCGTAATCGTTCAGTGCCGATCACAGAA 334575 29 100.0 32 ............................. AATGCTCAGAATACGATAGTTATTCGTATGGG 334636 29 100.0 33 ............................. GTGGCTCCGGGGGGTATGTCTGCCAGCAAACAC 334698 29 100.0 32 ............................. GCATTTTTGTCAGAGGCTCAATTGCAGGGTAA 334759 29 100.0 32 ............................. CCGAAATCTCAAACATATTGATCAGGGTGCGG 334820 29 100.0 32 ............................. GTATATATAAATCAAATTTAGCCGTCGCCGTA 334881 29 100.0 32 ............................. GGTTGCTAAACACGAATTTTTTGGGTACGATT 334942 29 100.0 32 ............................. TCAATGAGAGAGGCGGGAGAAAACTACAAATT 335003 29 100.0 33 ............................. TTCGCTTTCGGCATTCGGTATTCGCATGACGGA 335065 29 100.0 32 ............................. CGTTCGCCGATAAATGGCTGGACCGATTAAAA 335126 29 100.0 33 ............................. CTCAAAATGCCAACCTCAATATGGCAGCCAAGC 335188 29 100.0 32 ............................. GAAAACCATTCCGCTGCAAGACACCGAAAGAC 335249 29 100.0 32 ............................. TTCGCATGCGAACAAATGTTTTTACAGTGGTA 335310 29 100.0 32 ............................. ATACCGTTAGTAGAACCAAGAGAATTAAGAAT 335371 29 96.6 32 ............T................ TTTTTGGTCGGCGTATCGGCTTTGCTATATAG 335432 29 75.9 0 C...........A..........CCG.GT | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.6 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : CAGACTAAAGCGAAAGATGGGGTCAAAAAATTTACATTACCAAAACCATAAAAAAGCCCTTTTAGGGCTTTTTTCTATGCTAGTGACATGTTTTCACGTCAACTCACCAACAAAATATACACCAAATATTATGTAGAATATTAAACAAAATTAAACGATATTTTTCACTTAAATGATATCAACAAAAGAATTGATATCAAATATGTACGGAAAGACGGATAAGGTGAAAGAATACAAAGATGTATAGTGCACGGTAATTTGTCATTAACCTTTAACCAATCGATTACAGACACATGATGATACCAAATTGTTTGGTAGACAAAAAAATTACAAGAATGTGTATCGTAAAAAGCCCCTTATAAATCATATTTAACAGTTTGATTAAATTATAAATTTAAGCTGTTTTTGCTCAATTCTCAATTGCTCAAAAAATAATCAAAAAAATTGGTAGAATTTTATACCTCCCTATTTTAATTAATAAACAATAAGTTATAATAAGG # Right flank : TTTGTCAAAAAAACGAATAAAACGCCTGCTAATGCTCTAAAAATAGCTAGAACCCGACTACAGGAGATGATTGAAAATGACCACTAGAAAAAAACATAGCACAACATTCGAGGAACTCAAAAATAGGGTTTTAGCAAACCCCACAGCCCTAGCCGCGTATCGCGAATCCCAAAAAACGTGGAAATTGAGGGCATTTCTGATTAACGCGCGTGAACGCGCGGGGTTTACACAAACCGATTTGGCTGCACAGTTAGACGTGTCGCCGTCAAATATCAGTAGAATTGAAAACAACCCAGATCATGCCAATATAAAAACAATTTTTAAATATCTGGACGCGTGTAACGCGGACGTCGATTTTGTAATATCTGGCAACAAATAACGATCGTTTATAATAAGTTATACAAAATTATTAGTTACAGGTTATTGTCAATTAATTGAATTAATCATATAGTTAACAATTATTGATATTGCAAATTGTGATTGAGAATTGTTAATTGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 508326-509511 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGN01000038.1 Gilliamella apicola strain wkB308 Gilliamella_apicola_wkB308_contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 508326 26 100.0 35 .......................... CCGGCCATCATTAACGATCCATTTTTATTTAAAAT 508387 26 100.0 35 .......................... CCGAGTCCCCTTAACCTCTTTATCATGTGGTGATT 508448 26 100.0 35 .......................... CCGATCCCCGTAAAACCTGATGATTGCCATTTCGT 508509 26 100.0 35 .......................... CCGCCAACGTAAGAGGATTATCGCTCAACAGCAAC 508570 26 100.0 35 .......................... CCGTGCGAACATCTCTGACATTATAATACTCCCAC 508631 26 100.0 35 .......................... CCGGCTTTAAATGATCCATCAGCGACAACGACATC 508692 26 100.0 35 .......................... CCGGTGTTTGCCTAACGCAGATAATGCATTACTAA 508753 26 100.0 35 .......................... CCGCTCTATATCGACGTTCTCCCATAATTATAATG 508814 26 100.0 35 .......................... CCGATAAACTGGTTTTGGTTGTTCTGCGAGAGATT 508875 26 100.0 35 .......................... CCGATTAATACGCGAATGGGTAAAACCTAAGGGCG 508936 26 100.0 35 .......................... CCGTCTGGCCGTCGCCGTATTCGGCAAATCTGGTG 508997 26 100.0 35 .......................... CCGATTTTATAAAAATCTTGTATTTTTCTTTGCTC 509058 26 100.0 36 .......................... CCGGCAACAATGAGATGCCTAACCAAGGCTATTTCC 509120 26 100.0 35 .......................... CCGAATTCTAATCTTTCGCTGGTTTATCCCTATAA 509181 26 100.0 35 .......................... CCGGCGACGAGATAGACGGCTCGAAAGTGTGGGAT 509242 26 100.0 35 .......................... CCGTCGAATCTGAGGGGGTCGAAACTATGGATATT 509303 26 100.0 35 .......................... CCGACGATCTGGTGCAACAATGTTACCGGTATTTG 509364 26 100.0 35 .......................... CCGCCAAATAATGGCTGATTGATTTTAAAATTTGT 509425 26 96.2 35 .....................G.... CCGTAGTTTGTCAGTGTGCAAATCCTGTCCTTAGA 509486 26 96.2 0 ........................C. | ========== ====== ====== ====== ========================== ==================================== ================== 20 26 99.6 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CACCAAAGACTGTTGCAAAAATACAAGGTATTCAATTTCAAGCCATCGCATCACGACTAGCGGATCACGATGCCACCCAAGCTTATTCACACTATTATCGAAAATTTCCTTTTGCCAGAATGATTAAAGCGCCAATTTGGTCACTTAAATTACAACGAATTAAAATGACCAATAACTTAATGGGATTTGCACATAAAACTCATTGGGTTAGGACAGTGGAATAAATAATGAGTAAGTTTTTTAGTAAAATCCGCTTAGTCCAATAGAGCTAATTAACATAACGATTCGTTATGCAATGATCTAAAATAGCGTCGGTACATAAGCGCATGGCAAGTATAAATATTGCACAAATTCTTTTGCTGATATTGCTTAATAAATTGATAATATTATAAATTTTGTCAAACTCCAGCAGAATCTCAATCGCTTAAAAAAACAGCAAAAAAGTTGGTAGAATTTTACACCTTCCTATTTTAATTAATAAACAATAGGTTATAATTAGA # Right flank : ACCGTTAATAAAATCAATTAATTCTTTAATTAACTATTTTTATGCAACAATAAAAGGTTATTTTTAGCTTGTAATCACTCTTAATGATCAACCCTTTTTATTCTGCAAATTTATTTTTGTGATCGTAACGATCATAGTGAACATCATCGCTAATCAAATATTGATAAATATCATCCACAATTTCGATCCCATTTTTAATATAATCTGCTTCCCGTTTTTTTCCTCTTTCACCGGGGAAGAATACTTCACTATTGCCTTTTGCAGGTTTTACCTGTTTCAATTGATCTAACATCGCAGACATGCTTTTTTTGAATACTTCAAGCCCAACAAAGTATTCCGGGTTAATGACAATATGTAAATGCCCTAGATCACGTCCTTTGGATAAATCGGCATACATCGAAGACACGTTTTTACCAAATGGTAAACCAAGCAATATTCCAGATAACACATCAACCATCATCATTAATCCATATCCTTTTGCATCTGCAATAGGTAATAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 74011-75505 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGN01000007.1 Gilliamella apicola strain wkB308 Gilliamella_apicola_wkB308_contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 74011 26 100.0 35 .......................... CCGCTATTTAATGGATTTAAACACCGCATCGCACA 74072 26 100.0 35 .......................... CCGCTCAATTCGATATACTCAATAACTGATTGTTC 74133 26 100.0 35 .......................... CCGCTAATAATACATATTTCATTTTGTTTCTCCGT 74194 26 100.0 35 .......................... CCGTGATGAGTTTCATGCTAAAAAATTTGTTTACA 74255 26 100.0 36 .......................... CCGGGGTTTATTATTAGGTAGATTGACCTTGCCTTT 74317 26 100.0 35 .......................... CCGCGTGTCCGAAAGCTCTTTGTTTTCAAGTTTCT 74378 26 100.0 35 .......................... CCGAATGCTCAGAATACGATAGTTATTCGTATGGG 74439 26 100.0 35 .......................... CCGTGTTGCGGTTTTGTCTGCATAAATACGACTGG 74500 26 100.0 35 .......................... CCGCGGGAATTGCCAACGCTGGTAGATGACGACGG 74561 26 100.0 35 .......................... CCGCCTATTGTTTCGGTTGTATTCTGAAATATAGG 74622 26 100.0 35 .......................... CCGGGTGTTCGTGCAACCGGCTATATTATAACGTT 74683 26 100.0 35 .......................... CCGAATTGGCGAAAAAATTAAAACAGATTGAGCCG 74744 26 100.0 35 .......................... CCGATTTTGTCGACGCAATGATTAGTGTGCGTGAT 74805 26 100.0 35 .......................... CCGAAGAAATAAAAGAGAAAATTGCAAAAAGTAAA 74866 26 100.0 35 .......................... CCGACCCTAAAAACTGCTTTGAAATAGCCACTGAT 74927 26 100.0 35 .......................... CTGGACAATCTGGAAATCGATCGGGTATTTAAATT 74988 26 100.0 35 .......................... CCGTTGGTACTCTATAACTAGCATCTGACGCATAA 75049 26 100.0 35 .......................... CCGAAAATAGTAATTTGCATAGGCGTGGGAATGGA 75110 26 100.0 35 .......................... CCGTTTGGATTGGGTCCGAATGTTTCTATAGCAGA 75171 26 100.0 35 .......................... CCGGAAACTCCTATCGCGTGATAACACTAGATGAA 75232 26 100.0 35 .......................... CCGCGTTACAAGAAGCACTTAATAAAACGGCTGAT 75293 26 100.0 36 .......................... CCTTGGCTAAAAGAAAATCTAAGCGAGGCTCAGGCG 75355 26 88.5 36 A........A........A....... CCGAATAGAATTAAACGCCGAAATTCTTAGATGTGC GT [75371] 75419 26 84.6 35 .........A.GC...T......... CCGAAATACCAACTAAATATGCAGCTGAATACCCT 75480 26 88.5 0 .........A..C...T......... | ========== ====== ====== ====== ========================== ==================================== ================== 25 26 98.5 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TGATCAAGGTGCTTTACTGCTTGAACAAAATGGCAAAATTCAAGCCTATGTTGGTGGTGAAATCTCATTACGAAGTGATGAGTAACAAATTGTTCCCTGTATACACAGGGACAATAAATTCTTATAAAATTGAATAAATATCATGTTTATCCACTTTTTACTTTTTGGTAAGAATTCGCAAAGTGAGTTAATGGCTGTACCCTGTTAGTTAACAAGTAGAATGTGACAAAGTCCAAAAAGGAAAATATTTCACTGCAATTCATTAAAATCCATTCCCAAAAGCGAGAAATGACCTTGTAACTAGAAATGGGTCGGTGCACGAATAAATTACAAGAAGAATAGGCGCATCCAACTCCTTGTTAAATTTAATTAACTAACTGATTAATATAGACTAATGTGTTTAAAATGTCTAAAAACCAACTGAATAAAAAAACAACAAAAAAGTTGGTAGAATTTTAAACTTTGCTATTTTAATTAATAAACAATAGGTTATAATTAGG # Right flank : ACCAGTAGCAATCCTCTTTCAAATTCAATATGAGCAGTGACCGGAAGGGTTACTAAATAAACGTTGATTTAATAGCATGAATTTCATACCATTATCAAAAATCAAGGAGATAGTATGAAAAAAATTGTATTGTTTGGGATAATTGGTTTTATGTTGGTAGGGTGTTCATCGTCACCGGTATCTAATGATGAAGCGGTAAACGTTCCTCAAAAGCGAATATACAACCAAAACATTTTTGAAAAAAAAGAAGATTCAGGAACAGTTATTATAAAAAGAGATAAAGGCTTTGTAAGTAGCGCATGTTCCGATTCTCTTTATGTTGATGGTGTTAAAATTGCTGATTTAAACCCATCTGAAAAAATCACAATTTATCCTCGGATTGGGAAGAGAGTTTTTAGCATGATAGCTAATAACATTTGTGGTGGTGGTCTGGTTGAGGTTGAAGGGGATGTTGAGAAAAACCAAGTTTTAACATATAGGATTGCTCATTCTTTAAATGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82483-83975 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGN01000007.1 Gilliamella apicola strain wkB308 Gilliamella_apicola_wkB308_contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 82483 26 100.0 36 .......................... CCGCGACGGGCATTTCTTGGGCAACAAACTCATGAC 82545 26 100.0 35 .......................... CCGCCCAACTTATCCAGCAGAGCATGAATTTACAA 82606 26 100.0 35 .......................... CCGCACCTTGACGGCTGGCATTATTGCATAGATAG 82667 26 100.0 35 .......................... CCGCTTTATCAGGCGATAATTAAACGTGGTGCTCG 82728 26 100.0 35 .......................... CCGAAACCCGTTAGCGTGACGGTATACACATCGCT 82789 26 100.0 35 .......................... CCGATATTTGCCTATAGTTAGCGTTTTTCGTTTAC 82850 26 100.0 35 .......................... CCGAAACCCGTTAGCGTGACGGTATACACATCGCT 82911 26 100.0 35 .......................... CCGTGGGGATCAACTATGAAACACGACTTGAATTG 82972 26 100.0 35 .......................... CCGGCATGGGATGATAAAAATGGTTGTTGGAAAGA 83033 26 100.0 35 .......................... CCGGTAGGGCGATAGCGCGTAATCGACTCATCAGT 83094 26 100.0 35 .......................... CCGCGGGACGGCGATATATTTAAAATTTATTCGAA 83155 26 100.0 35 .......................... CCGCGGTTTAATCATCATTAACGGCTTGTTGGTAG 83216 26 100.0 35 .......................... CCGAAAATGTGGCAAAACGAATCAACATTGTTAGA 83277 26 100.0 35 .......................... CCGCTATTGAACTAGACCGCCTCAATGCGCAGCGT 83338 26 100.0 36 .......................... CCGTATCAACCAGATCATAACCAAATTCATAATTTG 83400 26 100.0 35 .......................... CCGCGGGCGTATAGAGTGGGGTGAAGAGTTAAACA 83461 26 100.0 35 .......................... CCGCTAGGTCTTTACTGTTAAATGACGAGGCAATG 83522 26 100.0 35 .......................... CCGGGGATGCATATGAAAAAATATGAAAATCGATA 83583 26 100.0 35 .......................... CCGATCCCAACACCAGAGAATATCGCGGATTTTGG 83644 26 100.0 35 .......................... CCGTCATTAAAGGCAACATCGTATGCAATTCAATG 83705 26 100.0 36 .......................... CCGCTCCGGACGAATCGACGGCGTGGTCTCACTAGC 83767 26 100.0 35 .......................... CCGGTCAAAAAGATGATAACGCCGAATATTCGTGA 83828 26 100.0 35 .......................... CCGGTCAAAAAGATGATAACGCCGAATATTCGTGA 83889 26 100.0 35 .......................... CCGTCGCAGTCTGACCGAAGTGAAAAACGCAGTCC 83950 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 25 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTTCTGGCTCTTTGAGTCTAGGTATAGTTTCTTTATGTTCGGTTTAATCATCAATTGTTGAATTTTAAACGATTGAAAATAAAGCGCCCGTGTATTTAGTTGCTAAACAACAAAACCTTTATCCATAAATTTATTGAACATACTTTTAAACACTAACTGATTATTTATCGCTGAAATCTGCTAAGTGAGTTAATGGGATAGCTTATTTGTTAAGTAAAAATAAGGCGAGGGCACAAAAGGAAGTTGATACATGGCAATTAGTCATGACCAATTAACGAAACAAGAAAAGTCATGTTGTAGGCAAAAATAGGTTGGTGCGCAAGAAAGTTGTAAAAAGATGAAATGCCTAAAATAGCATTTGAAAAGTAACTAAATATATGATAAATAATAAATTCTATTTAAGAAGGCTAACAAAGCAGATCGCCTAAAAAAACAACAAAAAAGTTGGTAGAATTTTACACTTTGCTATTTTAATTAATAAACAATAGGTTATAATTAGG # Right flank : ACTGTTCGCATGCGAACAAAAATGGATAATAGGTAAGGTTTCCTTTATTCTTAATAGCGCCAAGCAGGCATTTTGTAAAATCCCTGCTTGGTGAGCGTTGATAGAGCCATACCGTTTTTAAAAAGTCTAAAAACTCATTTTTAACAACGGTGTTTCTGCAACTTGATATTTAGAATCCTTATTTTTTAAGTTTAAGCAATCTTAATGCATTGGCTGTGACAATCGCTGTTGTTCCTGAATCTGCTAATACAGCAAGCCAAAGCCCTGTAATACCAAATAGGCTGGTAATTAAAAATATCAACTTAATGCCTAAAGCAATCGTAATATTCTGTTTGATATTTCGGTTAGCAAAGCGCGTTAAACGTATCAATTTTGGTAAACTCAATAAACTATTTTTGGTTAAAGCCGCATCGGCTGTTTCGAGTGCGACATCTGTTCCGCTACCCATTGCGATACCTACCGTGGCGGCTTTCATTGCAGGGGAGTCATTAATACCATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //