Array 1 1459-2594 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AOMA01000156.1 Halobiforma nitratireducens JCM 10879 contig_156, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=====================================	======================================	==================
      1459	    37	 100.0	    36	.....................................	GCATATCTATCGATCGCTCGCGGATGGATCACGGGG  	
      1532	    37	 100.0	    36	.....................................	AACACTCGAGTCGGGTTAAGTCGCTATCCAGTAGAC  	
      1605	    37	 100.0	    34	.....................................	CCAGTCCCGTCGGCGTCATCGCCACCACTGCCGT    	
      1676	    37	 100.0	    35	.....................................	TGAGCGACAGGGACCATTCAACATCAACTTCGACC   	
      1748	    37	 100.0	    36	.....................................	TCTACGCCACGAGCGACGACGCGCTCGTGCTCGTTG  	
      1821	    37	 100.0	    36	.....................................	CGCTTCACGACGACCGGTACGAGTACCTTTTCGACG  	
      1894	    37	 100.0	    35	.....................................	TGGTGGTCACGAGTCTCCGCCGTAACCACGCTAAT   	
      1966	    37	 100.0	    38	.....................................	CCCTTGGATCCACCGCTGAAGACTTTCTAACCCTCACC	
      2041	    37	 100.0	    36	.....................................	TGGACATCAGCTGTTGCCCCCTCAGAGATTGTTATT  	
      2114	    37	 100.0	    37	.....................................	TTTCACACGCACACCGTCGTCACGAGCGTCGGCGGCC 	
      2188	    37	 100.0	    36	.....................................	GAACCACTGGATATCGAACTCGCGGGGAACGACGCG  	
      2261	    37	 100.0	    36	.....................................	AGTAGCTGGTTCACTATCTCGAGTTTCTTTACCGTA  	
      2334	    37	 100.0	    38	.....................................	TCGCCGAGTTCGCGGTCGATCGCCTCCTCGATTGCGTC	
      2409	    37	 100.0	    37	.....................................	TTGAGATTCACCGCGTCGATCTCCGGCAGTGCACCGT 	
      2483	    37	 100.0	    38	.....................................	TAGTCGTCGCCGTAGCCTTTGCCGGCCTTCCATTTCGA	
      2558	    37	 100.0	     0	.....................................	|                                     	
==========	======	======	======	=====================================	======================================	==================
        16	    37	 100.0	    36	GTTCCAGTAGGAGAAAGCCCGGAGACGGGATTGAAAC	                                      	       

# Left flank :   TCGGTCGTGGCTACAGGTCACGGCCGACAAGCGGTAGTTTCACCGCTCTCAGCCGTTGATGTTACGGCTGTAGGCTCGCCCGCCGTCACGCCCGGCTCGGGCGCCTCTGGCTTGAATGCATGGGCACGGGCTCTTTGCCCACGAGGCTCCGCCGGGATAGGCGAAAAGCGGCGCATAGACAGCGCCCGGCTCAAGGCAGTAGTACAGCAACAGTGGTTGCGGCACAGGACTCTGGCGAGTCCGACGTGGCCGCGGAAATTATAGCCCACAGGTGCTCGGCGTATACCGAGTGCGAACGAACCCGTCACGCCAAGAGCGGGTATCCCACCGTATACTGAGGATGATACACCAATCGTCCGAGAAAACGGAAAAAGAAAGATTTCATTCATACCTTCATCGACCCACTTAAACAGGCTGTACAGCAAGGGTCGACGAAGACATACCGGTAAATGAGTGCTGGAAAATTAGCCAGCAACACTCTGGACGAATCTAAACCCCCT
# Right flank :  CTTGGTAGCACCTCCGTTTTAGTCGTATTTTTTGTACTGATCCAGCAGGAGAAGGTCCCGCCCTTGAGGAAACATCCAAAAAGAAACATAGCTCGTGAACTGAATACAGCGATTGAGTCAGCACGGCGACTTCGCTTATTTTTCATTGAACTCAGAGTATCAGCTGTTCAGTCACGGCCATCAAGACCGATCATCGGTCAGAGACTTAAACTGAGTCGAATATTCGGAACTGCAAGTAGTCTTTTTAAGCAACGTGATAGTCGTTGGTGATATGATAGCCGATCCGAGGGTCTTCGACGATTCCAATGACGACGTCGAGCTGCTTCATCGCGGCGGGGAGATGCGCGAACTCCTCGAGCACTGGCGCAATCCGGACCAGGACAACATCCTCTTGTCAGGGCCCAGTGGCGTGGGGAAATCGCTATTTGCCAAGGTCGTCCTCGACCGACTCGAGGAGCAGACGGCGATCCATCGAGTCCGCGTCAACTGTCTCCGGGAGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCCAGTAGGAGAAAGCCCGGAGACGGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [12,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.20,-4.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.24,0   Confidence: HIGH] 

# Array family : NA
//