Array 1 25015-28040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESDL010000020.1 Hydrotalea lipotrueae strain TMF_100 NODE_20_length_70354_cov_307.913827, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25015 30 100.0 34 .............................. GAGAAAGAAGCAGTTGTACCATTTAAAGGCCCTG 25079 30 100.0 34 .............................. GAACTTGTGCTGCTAACTGAACTTTGAGCAGTAA 25143 30 100.0 35 .............................. GGGCTATCAATATCTAAAATAACACCTGCAATATT 25208 30 100.0 37 .............................. ATAACATTCGCTTCAACAATATAAGAACCTGCATCAT 25275 30 100.0 35 .............................. TCTATTGGGGAAGCAGGAAATGCTATTGTTAATGT 25340 30 100.0 34 .............................. TCATTAATTAATCTCACATTATAATCTTGCGATG 25404 30 100.0 34 .............................. TATTTTTATAGAATTTAGCTGCCGGAGCCGGTAA 25468 30 100.0 37 .............................. TTTACATATTAAAATATTTTCTTCATCGGTAATGAAA 25535 30 100.0 37 .............................. TGGTACATGCATCCGGAAATTTTATTACTAAAACATA 25602 30 100.0 37 .............................. GATATGGTCTTTAGCCGGAGAATTTGACCGCCATAGC 25669 30 100.0 35 .............................. AAAGCGGGGCAGACGTAACGCATTTCAGCAATCGG 25734 30 100.0 34 .............................. TTACGAAAATTCTGCCGTCTTCGTCAACTGTGTT 25798 30 100.0 34 .............................. TTCGAGAATTTCACAGTCGTTCTGTCCTTATCGC 25862 30 100.0 35 .............................. ATCGTAATCAGTTAGGTATGGCTTACTATCATGGT 25927 30 100.0 37 .............................. TAATTACCAGCCTATATACACCGCACCCGCTATATAT 25994 30 100.0 34 .............................. TCTTTATAATTACCTTTTAATTCAATATTCCCGT 26058 30 100.0 35 .............................. GCGTTTGTTTAATTTGTGATTAATTCCATTGCCGC 26123 30 100.0 35 .............................. GCATCAATTCAATTTTATTTTTCAATAATTGGCCT 26188 30 100.0 34 .............................. AAAAAAACACCTACCTGACTGACAATAAACACGT 26252 30 100.0 36 .............................. GAAACTGACAATCCTAAACCTACTTTTTGTAAGACC 26318 30 100.0 35 .............................. CTCTTTTAGATGGGCTGACGAATAAATGATTTAAT 26383 30 100.0 34 .............................. GATATTGTTAGTGCCGTTACCCCTAATGCCGATG 26447 30 100.0 36 .............................. TGCCTGATTGAGCTGTTATACTTAGCGCCACGGCCT 26513 30 100.0 34 .............................. TTTTGTATTTGTGTTTTCATAATTTTTAGTTTTA 26577 30 100.0 38 .............................. ATACATTGAATGTATCGTTGTTTAAATACGCAGAATCG 26645 30 100.0 36 .............................. TTAGATGCCGTTTACAATGGGCTATTAAAATTAGAA 26711 30 100.0 35 .............................. ACGATTAAAGCAGCTGCACCATTAGTTGCCGGTGT 26776 30 100.0 34 .............................. TTTCTTAAATGAGAATACAGTTGCAATCTTTAAA 26840 30 100.0 35 .............................. TTGTTTGTGATGAAGTAGTTGCTATCGTTATAGTT 26905 30 100.0 35 .............................. TTAAAGGTAAGTAGGTAGATGCAGCAGCAGAAGTA 26970 30 100.0 35 .............................. CCGAATGAAATAATTACTAATAATAAAAAAAATAT 27035 30 100.0 37 .............................. TTTGTTGATGTTGTTGCCTGTGATATACTAAATGCAC 27102 30 100.0 35 .............................. GTTGCTAAACGCCACTAAAATATCATCCAAACCTT 27167 30 100.0 36 .............................. TGTATATAACGACCTTCCCTTGCCTTGGCGTTATAT 27233 30 100.0 35 .............................. TTAATTATACCGCCTAATATATAACTTAACTATTT 27298 30 100.0 35 .............................. TGATTAGGTATTTAGCAAATTGCTCAACTGTTATC 27363 30 100.0 34 .............................. TTCGTAATATTATTTAATTTTACAATTCCTTCAA 27427 30 100.0 34 .............................. GAATTTTGTTTATATACGCTTCCTGACAATGCAG 27491 30 100.0 34 .............................. ATTTTCTAAAATAAAATTGGCTGCTTCGTTCCCT 27555 30 100.0 36 .............................. GGCATGTAATAGGTTATTAAAAGAAATAGCGAAAAG 27621 30 100.0 34 .............................. AATTTGGATTATTGCCGGTGCCTATTAATTGCCA 27685 30 100.0 35 .............................. TTAACTGTAGTAGCTTCACAGTCATTTCCTGCTCC 27750 30 100.0 35 .............................. TTAGTTATATATTTATTGTTTACGTCTGTTTGTCT 27815 30 100.0 36 .............................. CCCTTTTTGCATCGTTTCAATTTTTGATTTTAACAA 27881 30 100.0 35 .............................. ATGTTTTTAAAATATATTGCTCTAAACGCTCCCAC 27946 30 100.0 35 .............................. CCCTTTAAATTTTGCAATGTGATAAGCAATTTGTA 28011 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 47 30 100.0 35 CTTTTAATCGTACCATATTGGAATTGAAAT # Left flank : AATTAAATATAAATTAATATAAAAAATGTATATTATTTTAGTATACGATATAGAGCAAAAACGGGTAGGTAAAATGTTAAAACTATGCAGAATATATTTAAACTGGATACAGAATAGTGTTTTTGAAGGGGAGATTACAGAGGTAAAACTAAAAGAACTGATAGTCAAAGCCAAAATAATGATGGATATTAAAACCGACAGTTTAATCATTTTTAAAAGCCGACAGGAAAAATGGTTAGAGAAACAGGTAATTGGTAAAGAAAAAAATGAGGTAGATAATTTTATTTAACATCGTCTACCACCCTGTATGTAGCTTTAAGGCAACTACAAAAACATGTAAGTTTTTATCATAAAATAGCACCAATCATACTTTCATCGCATCGTCGAACAAAGGCTGCAATAATATTATCACAGATCGACTACTTTTTAGTGCAAAAACCTTAGTTTTACCTTATTAAATTACATTGTAAATCAACTGTTTATCATTTGCTGATAAGCGG # Right flank : TGCCGCAATAGCTCTATCATTCAATTGAAGTATACAAATACTTTGAGAGGACGTTTTAAAAAAGTACGGAAAACAGGAAATGGGTAGTACTGTTTTTTCCATACTACCCATTTGTATAGTGGAGATAAGAAAGTACGAATTGGTATTATTTGAAATCTGCCGATTTTAGCCCTTGATTTACTTTTACATCTTTCACATCTAATTCAATTTTCAGTCTGCCCTGATCAACAATTGTTTTCATAGGCACCTGCAAACCGTTGTATGATTTATAATCATGATAAAAAGTTTGAATAACCATTTTTCCTGCAGGGCTACCATCTTTTTCAGTTACAGATTTTAATTTTAATCCGGTTTTTACATCATAGTAATTGGTAAAAGTTCTGCCCTTAGGCGATTTAATTTCAACAGCATAAGCATCATGGCCTTCAATGGATTCAATATCTTTTACTGTATAAGTATAACCATCTTTTGATAAATAATACGCTTCAGGCAGCATGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCATATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 11541-13356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESDL010000009.1 Hydrotalea lipotrueae strain TMF_100 NODE_9_length_112840_cov_367.834449, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 11541 47 100.0 30 ............................................... ATTAAATCATTTATTCGTCAGCCCACCTGA 11618 47 100.0 30 ............................................... CTTTTTATTATTTTTTTTGTTGCACATGCA 11695 47 100.0 30 ............................................... GCTAACAAAGCAAATGCAGAAGCAGACGCA 11772 47 100.0 30 ............................................... TAATAAAATACCTGCATAACCATTATTGAG 11849 47 100.0 30 ............................................... CAGGAACTAATGATGATGATACAGGCTGTG 11926 47 100.0 30 ............................................... GTATACGACACAGACCCATACAAGAGAGCT 12003 47 100.0 30 ............................................... AATCATCATTTGTCTTTACAGGCTCCTCTA 12080 47 100.0 29 ............................................... ATAGTTATATTTGGGCTAATTTGATTGAT 12156 47 100.0 30 ............................................... ATTGAACTTAGGTTAGGTTTTAGCCCATTT 12233 47 100.0 30 ............................................... TTGGGGTGCTAATCAAAATACTCCGACTCT 12310 47 100.0 30 ............................................... AGCTACGCTTTAAGTGAGATTAAAGTTGTT 12387 47 100.0 30 ............................................... GTTGGTACGCCAATTACAATGGAGATATTA 12464 47 100.0 30 ............................................... CCTGCACCTATTCAAACGAGCAATAGTGTA 12541 47 100.0 29 ............................................... AAGAAAATGCAAATGTTGAAGCATTGAAC 12617 47 100.0 30 ............................................... AATCCTTCAATTGTATTGCCACCTCCAGTA 12694 47 100.0 30 ............................................... TTATATTACCAAAAAGTAACCACCGGTTAC 12771 47 100.0 31 ............................................... CAAGAGTTACAAAAGCAAATGTGGGATTACA 12849 47 100.0 30 ............................................... AATGTGTTTGCTATCCGAGTTAATTCCTGA 12926 47 100.0 29 ............................................... ATACAACTGCACAATACCGCACACCCATT 13002 47 100.0 30 ............................................... ACTTTTTCATTACGCAACCAAAAAAGATTA 13079 47 100.0 30 ............................................... CAATAAACCGCCAGTTAAAACAACGTTTAA 13156 47 100.0 30 ............................................... ATCTATGATAAATGGGAAAAAGGTAATCTT 13233 47 100.0 30 ............................................... GGCTTCTGTAGCATCGTGCAATAAACCTTC 13310 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 24 47 100.0 30 GTTGTGATTTGCTTTCAAATTCTTTTTATCAGATCTTTGATAACAAC # Left flank : TTTCAAATCTTAGTCGGTCGAGAACCTGTTCTTCAGAGTATGGTAATAAAGTCATTTTTAGTCATTTAATATCGCAAAAATACAATAATAAGATTATTGTACAAATCTTATTTATCATAAAATTGTGTCAATAAGGAAATTTACTTTAATAATGTTGCTTAATTGTCAGAATTGGTTGACGCTAAAATACGCTTGCTATCAACAGTTTGCGTGTTGCCGTAGTTGGCAATTTCGGTGCACTTCACTGTCAACCTGCACAAAGGTTTGATAGTATGTCTCGACCTAAAAAAAGTTTACACTATTTGGTTAATAATCCTAACACAAGTTTACATATAATTGTTAATACTAAATAAGGTTAACATTAAAAATGTTAATTGTTGCCGAGTATTTGACAGGCAACTACACTTATCTTTGATAACAACGATAAAGGTGATTATAGTAGGGATGTGTCAAAAAACACTGGCTCGAAAGTAATCATCTTTATTTTTTAAAAGGTACTC # Right flank : CAGTAAATGCTGTAATACAATGACTGTAAGGGTTTTCAAAGAAAATAGAAAGAAAAAAATGATTGAAATGGCTGTGCCTGCAGTTGGCAGGGCAGCCTTTTTACTTTTCTATTTTTGTTATATTGCATTAAAATAACTCTAATTGCTGGGGTATGGGTTGTGCCGGCGCTTCTTTTTTACCCTGAAATAGCTCCATCATCCCAAATTGTTTGTCGGTAATGGTCATAATGCCCACATGCCCTTTTTCAGGTAATATTTTTTTAACCCGCTTTATATGCACGGCGGCGTTTTCCATGCTGGGGCAATGCCGCAGGTATATGGAAAATTGAAACATTACAAAGCCATCGGCCATAATTTTCTTCCTGAATTCTTGTGCCGTTTTTCGCTCTGTTTTGGTTTCGGTAGGTAAATCGAAAAATACCATTATCCACATAATACGATAGGCATTGAAACGTTCGGATGTGTTATTGTGCCTGGGCATAAAGGGAACAGTCTGTCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTCTTTTTATCAGATCTTTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.80,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //