Array 1 216957-217405 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWP01000021.1 Hafnia alvei ATCC 13337 ATCC13337_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 216957 28 100.0 32 ............................ GTTTGCAGCACGCTCATTGCGCTGTCTACCGC 217017 28 100.0 32 ............................ AATACACGAGGTTCATATGGCAAAAGTAGCAG 217077 28 100.0 32 ............................ AGCCACAAATACGTGAACAGATTTACCCGGCA 217137 28 100.0 32 ............................ ATGTCCATCTACGGCGGCTTCGTAAAGTACAT 217197 28 100.0 33 ............................ CTACATCCGAGAGCGTGACTCAGCAGAGCCATG 217258 28 100.0 32 ............................ TTGCCGTCGAGCTGCATCCCCTCGCCTTGACT 217318 28 100.0 32 ............................ AATTCAAGTAACACGTGGAGATCAACCGACAT 217378 28 78.6 0 ....................A.A.TTCC | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTTGATTGGGATACGCTTGGCCCCGTATTAGGCAAGGTGTATGAGGAGATCGACGAAGTGATGGATGAAGCGCAGCAGGCGGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCTGAAAACGCCCTACAGGCAGCCAACCGCAAATTTGAACGTCGTTTCCGTGCAGTAGAAGATGCAGTGCGCGCCTCGGGCAAAACCATGGAAGAAGCCACGCTTGACGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAAGGCTGACGTGCTGCGTTAGCCTTTTTTTTCTGCCTACTAGTAACTGATTGATTTTAAACAGGCTGAGAAAAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : CTCGCCACTCTATTTTTTACCATCTGGTTGCAAAATTCCTCGTGTGCCTAGTAGAAACAGCAACGTCATTAGTGCCATAGCCAGTAGACCTGCTTGGCTAACACGGGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGCTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGTGTGACGGTGATGTCTGCGATTCGGTGTTTCATGCTAAACGTAAGCGTAGTAAGCATGACCGTACTCACCAACGCTACACCAAGCGCTTGACCAATATCACGGGCGGCAGACTGAATTCCGCCTGACTGGCGAGCCTCTTTTTCCGGTAATGCACTGGTGACCAAATATGGCGCGTTGGCTGCAATCACTCCCATGCTGGAACCGATAAAACAAAGCCCGACAATAATCAATGATCTGTTAAAACTATGCACTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 698910-697980 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWP01000004.1 Hafnia alvei ATCC 13337 ATCC13337_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 698909 28 100.0 32 ............................ TGAATGCCGGCGGCGATAAAACGGGTTGCCGC 698849 28 100.0 33 ............................ TTGGTTCACAGGCCGCGAACTAGCGATATCACA 698788 28 100.0 32 ............................ AACTCCATGGACAATCAGCTTAAAAAGCTAAA 698728 28 100.0 32 ............................ AGTTTATGACGCAACAGCAACAGCGTGGTTTG 698668 28 100.0 32 ............................ CATTCGGGGTAGAGCCGTTGCTGGCAGGTCAA 698608 28 100.0 32 ............................ GTATGCAAGTCCTTTGCTATTCCCAGTAAACG 698548 28 100.0 32 ............................ AACTGGTTTGCTGACACAGTCCATGTCGGGGT 698488 28 100.0 32 ............................ TATCACAACGTTCTATACGCCATGCTTATTCA 698428 28 100.0 32 ............................ TTCTCATCACTGCCCTCGTCAGCAGGATCAAA 698368 28 100.0 32 ............................ ACGAGTTTAGCGCAGCGGATACGCTAGCAGAA 698308 28 100.0 32 ............................ TTATGAGCAAGTGTACTTGCTAAATCAGCAGC 698248 28 100.0 32 ............................ TCATTTATACGCCAGCTGATGGCGATATTTTT 698188 28 100.0 32 ............................ TGTATGCACTTCTGAAAATGCCCGTAGCAAGC 698128 28 100.0 32 ............................ CAATATTCCATGGGCTTGTGTTGGCGTCCCAT 698068 28 100.0 32 ............................ ATCAGGTAACACCGGTTCCATGCTATTACCCC 698008 28 92.9 0 .....................A..A... | T [697988] ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGCAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGAGATTAGATGAGCTGGAAGCGTTAATCTGCCCCCAACTTTCCTGTGAGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACTAACCTTTTTTTTCGCCTATTTATAACCCTTTAATTTTATGTGAGAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : CAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGCCTCCGATCAAATAAAAGCAAACGCTTTCCTAAATTATAAATTCCTATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGATGGGTTTTTCATTTCGTTAACAGTATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATTAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGTAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 768737-766846 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWP01000004.1 Hafnia alvei ATCC 13337 ATCC13337_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 768736 28 100.0 32 ............................ AGAATACACAACCAGCGTTTTAGATTCCCCCT 768676 28 100.0 32 ............................ CCGATGTACGGCTATCATTAGGCACTTTGACA 768616 28 100.0 32 ............................ GCCTTGCAACGGCAATCGACAAGCTACCCATT 768556 28 100.0 32 ............................ GGGATGATGTATTTTCAAAACATTGAAACCGA 768496 28 100.0 32 ............................ TGCGTAAGCGCTGAACCGTCGGCCATCAATGA 768436 28 100.0 32 ............................ ATTAGGCACGTCGTATGTAGAGTTAGGCATCA 768376 28 100.0 32 ............................ CATTCAAGAGCCCGCCGCGTGCGGGTTTTTTT 768316 28 100.0 33 ............................ GCTAAAAAAGCAATAATAATATGTTCCATTTAA 768255 28 100.0 32 ............................ TTCATTACTAGTAATCGGGTGATTCTTTCTGT 768195 28 100.0 33 ............................ GTGCGTTAGAAGGTAATCGGTACTGCCGACTAA 768134 28 100.0 32 ............................ TGCAATAATATATTTTTTAAACTCTGCAACGC 768074 28 100.0 32 ............................ CGCAGAATTCGCCTCCGCTGAATTTATCTAAT 768014 28 100.0 32 ............................ TCGCAACAAGGACTACAGATGACAGACGAACG 767954 28 100.0 32 ............................ GTCAGGGAAAAGAAAATCTTTGCCATAAATTG 767894 28 100.0 32 ............................ ATCCGGCGCAGCTTTGCGAAGCTTACATAACT 767834 28 100.0 32 ............................ TGAATCCATTAGGAATTTCTGAGTAGCCTTCA 767774 28 100.0 32 ............................ ACAAATACAACTGCGGCAGCATTTACGGCAAA 767714 28 100.0 32 ............................ TCACCAATGGTTGGATTGGACGGTGCTACACG 767654 28 100.0 32 ............................ TAGAATGCCTGCAATAAAATCTAATATCCTAA 767594 28 96.4 32 A........................... TACGGTTAGCGGGGATGGCTCCAGCGTTACTT 767534 28 100.0 32 ............................ AATCGCTGCCGCTCCACCTAATGTACTGATGG 767474 28 100.0 32 ............................ CATCGGATAGAGCCTTTTTTCTTTTTCACTAT 767414 28 100.0 32 ............................ AAAGCGCACATGACATCAGTGTTAGTTAAAGC 767354 28 100.0 32 ............................ AACGAAGGCACGTTAACGATTTGGGGGCTCAC 767294 28 100.0 32 ............................ GCAAACTGTTCAACGCCGCGATTGTCTTTTAC 767234 28 100.0 33 ............................ TGCCAATCTAGAGGATGTGTGAGTGCGGTTGGT 767173 28 96.4 32 ...A........................ TGTCAAACCTACTCAGCCACCGGCTATCCCTA 767113 28 100.0 32 ............................ TTCAACAAAGACTTTGCTGCGATCCGATGACG 767053 28 100.0 32 ............................ GATACACTGGGGCACCGCTTGGTAATTCATAG 766993 28 100.0 32 ............................ AGCATTTGAGATTTAGCGAGAATGAGATTTGG 766933 28 100.0 32 ............................ ACTACACGCAACGGATCATATCAGGAGGAATC 766873 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAGGTGCGCAACCATAATCTTGGCGATAACGTCAGCGCATTGACCTTAGAGCACTATCCTGGGATGACAGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGTTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATTGTATTCGTTGGCGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : CTCACCATGGTTTGTGTTTAATTTTATTGGCTATGTATCAACCTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGCTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGCGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTCGGTTTTTGCGGCGGAGGGGGAACGCCCTTATTTGCGGCAAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //