Array 1 88015-88836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020471.1 Fuscovulum blasticum strain 28/5 plasmid pRsa, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88015 29 100.0 32 ............................. TATCCGGCGCCGTCGACCCAGTTGTCGGCGTG 88076 29 100.0 32 ............................. CCGTTGGCAAACCGTGGCAGGCAACGACCTAC 88137 29 100.0 32 ............................. GTGATGCAGGCCATGCGCTGGTGGCCCGAGGA 88198 29 100.0 32 ............................. CCGGCTCTGATGACGATCGCTAAGCTGCGCAT 88259 29 100.0 32 ............................. AACGGCACCCCAGCCGCGATGCACTGATCGCG 88320 29 100.0 32 ............................. CGCCACCACGACAGGATGATCCGGCCGGAACG 88381 29 100.0 32 ............................. CGCAAGGCTTCCAGTTTCTACTATGACGGCAT 88442 29 100.0 32 ............................. GCGCCCAGCTTCGGCATTTCGATGGTGCAGTT 88503 29 100.0 32 ............................. ATGGTGTCGTCGCCCCGGTCGTTTTGGCCGAA 88564 29 100.0 32 ............................. AATGAATGTCATGTCGATCCGGTGGCGCCGCC 88625 29 100.0 32 ............................. ATCGTCTCGGATGCGCTTGAGGGTGCCCAGCA 88686 29 100.0 32 ............................. CCACGGCCGAGGATGTGCGCAAGCTGTTCCAG 88747 29 100.0 32 ............................. GCGTCCATCAGATCGGAGTTGATGGTTTCCCC 88808 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : TGAAGTTGACAGCTGTCAACTTTCCGACGCCCGGCTTCTGTCAGAGGTGCAGGCGCCGGGCAACCAATTGAAGAATATGACGCTTATTGCCAAGATCAGCCGCGCCGTCTGCGGCTGGTTGGGCAGAGCCGTATCATGGATGCGCATCACCGCCTGATCCGGGGCTGTTTGCCGATGGGGCCGGGAAGGGCAGGGGCGTTTCCTGATCTTGCCGCAGCGCCGCCCGGACACGAAAGACGATCCGGGGCCAGGTGCTGGCCTCTGTGGAAGAGGGCGATGCGGTGATGATCTGGAAAGCCCTTGCCGATCAGGGCTTCGACTTCGCCACCACCGTCCGCATCCGCCACATGCCGGCCGATTTCAACGGGCTGAAACGGCTGTCCTTCTTCCCGCGCGAATGACGCGACAGGCACCCGCCGGCCCGTCCCCCGAGGGGCCGAAACGCCGGTAGATCGTTTGACATCGTGAATAGGTTTGCACATCAATGGCTTCCAGCCAGA # Right flank : GGGAGAGCGTCACAGACGGTATACCCGACCGGACTGTTCCCCGCTGGCGGCGTGGCGGCGGAGGGGGTGGCTTTACGGGGATCGGCAAGAGGTTGTATCTCGCGGGGGCCGGAAATCTGGGGGGCAGGCCATGCGAGATTACGATGCGATCCTGAACGAGTTTTCGCCCGTCAGGGCCGATCCCATCGGGGCGGAGGAATATTCCGGGCGGCTGGAGCGTCTTGCTGCGGCCATGCGGCGGAGCGGGGTCGAGGGTGTCTGGCTGGATGCGGCGGCGTCCTTGACCTATTACACCGGGCTTGTGCTTGGCCTGTCCGAGCGGATTCATGGCGCGCTGGTCCTGAAGGACGGGGCGCTGGTCTACGTTACCCCGAACTTTGAACGGCCGAAGCTGGAAAGCATGGTGCGCCTTCCCGGCAAGATCGTGGTCTGGGAAGAGCATGAAGATCCCTTCGCCCTGTTTGCGGCCCAGGTGACGGGCCGTCTGGCGCTGGACCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2519603-2521538 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020470.1 Fuscovulum blasticum strain 28/5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2519603 31 100.0 35 ............................... TCAAGATCGACGGAAAGGGAACCCTGCTTCCCGAA 2519669 31 100.0 35 ............................... ATTCTGCGGCCTCGCGGCTTTCGCCATCCGCCAGC 2519735 31 100.0 35 ............................... ACGCCGGCGCAGCGGCAGTTTCGGGCTGCCGCGCG 2519801 31 100.0 34 ............................... ATGCGGCCCCCTTCGGCCCGTGCGGGGCCAGCAG 2519866 31 100.0 35 ............................... GCCTGCCGCAGGATATGGCCAAGAGGGGCGCGTGG 2519932 31 100.0 34 ............................... ATCTTCAAGGCCAGCGAGAGGGTGACGCTGCCCT 2519997 31 100.0 34 ............................... CAAGATCGAGGCCGATCTGGCGTCCACGCTGAGC 2520062 31 100.0 34 ............................... CTTGGGTCGAGCGAAATTGGATCAGGATCAGGAC 2520127 31 100.0 34 ............................... TCAATGCCGCCGTGCAAACGGTGATCGCCCTGCA 2520192 31 100.0 34 ............................... CTCGTCCGGTTGGCCTCCGCCTTCGCGCATCCGC 2520257 31 100.0 34 ............................... TTTCCGGTCAGCCACGTCCACTCGTCCTTGAAGG 2520322 31 100.0 34 ............................... TCCTTCTGGGAGTTGACCTCCTTGAGGCGGCGGG 2520387 31 100.0 35 ............................... AACACGTTACGAAACGTCAAGTTGAAATATGCTTG 2520453 31 100.0 35 ............................... GGACTTTGAAGCCGGGGCACAACCGCGGAGCGTAA 2520519 31 100.0 33 ............................... TGCGCATTGTAGAAATCGGTGAGCGAAATGGAG 2520583 31 100.0 35 ............................... CACGCCGCCGCTCACAACGCGAAAATACCAAACAA 2520649 31 100.0 35 ............................... ACGTTCAACCTCGGGGCCGGTGCGCTGCGCAAATC 2520715 31 100.0 35 ............................... AGCCGCGCATCGCTTGACGTTGATGTGGAGGTAGG 2520781 31 100.0 36 ............................... AAGCTGATCGAACGCATCGCCGCAGACCTGCGGGAC 2520848 31 100.0 34 ............................... AGGCACGCACCAGAGCGGCGGCGGAAGCCGAAGC 2520913 31 100.0 35 ............................... GACCACGTCGATAACGTGTGGATCGGCCCTGTAAG 2520979 31 100.0 35 ............................... GTGGGTGGGCGACATGAATGCCGCCGGCATGGAGT 2521045 31 100.0 35 ............................... GGCACCGCTAAAAACGTCTCGCCCTCCGTCCTGCC 2521111 31 100.0 35 ............................... GCACTTGGCGTGGTCGAATAGTCGGATACGGCCAT 2521177 31 100.0 35 ............................... CTCGGTGGAGACGCATCCAGCCAGAGCGATCAGGG 2521243 31 100.0 35 ............................... TGCTGACGCGGTGCTGGAACAGGCATTGGGCAGTT 2521309 31 100.0 34 ............................... ACCAAGGCGGCGATCATGGCCTGCCTTCGTGCCG 2521374 31 100.0 35 ............................... CGCATGACATCTGGGTTCCGCTCATAGAACCGCGC 2521440 31 100.0 36 ............................... CAGGAACAGGCGATGCAGATTGCCGTGGTCGCCGCA 2521507 31 77.4 0 ......................C.GA.GGGG | G [2521526] ========== ====== ====== ====== =============================== ==================================== ================== 30 31 99.2 35 GTCGCCCCCACCCGGGGGCGCGGATCGAAAC # Left flank : CTATCCGCCATGGTTCTGGACCTGACATGCTCGTCCTTGTGACCTATGATGTGAACACGCTGGAAGCGGGCGGCAGGAAACGCCTTCGCAAGATCGCCCAGGCCTGCGAGGATTACGGCCAGCGCGTCCAGTTCTCGGTCTTCGAGGTTGAGGTTGACCCGGCGCAATGGACCCGGCTCAAGGCGCGGCTGGAGGGGCTGATCGACCCCGCCCATGACAGCCTGCGCTACTACTATCTTGGCGCCAACTGGGAACGCCGCATCGAACATGTGGGCGCGAAACCCGCGAAAGACCTGAACGGCCCGCTGATCCTCTGACCTCCTCTGCGAACCTGCAGCATGGCGCCTTCCCCGCCGAGGTTCGCACCCTTTCCAGCTCTTTGAAATCGTGAAACATTCCTGCCGCCTGCGCCGGAAAACACCCGGGCGGAACCAGAACCGCCCGGCATTCGCGGCCAAGGCCCGATTTCCTTTTTGTCCTCCGCCAGATATACCCCCACA # Right flank : GAGGTGGGCCGGGTATGGCCGTCTCCTCTGTGGCGTGGGGGCGGCTTGGTCTGGCTGTTCAGATTTTCCGAACCGGCTCTATTCACCGCGGGACGGGCAATCTAGAACGGTGGGAAATGATCAAATCATGGAATCGCTCGATGGCTATCTCAACTCATTCCATTCGTTCGAGTGCGGCGACCGCTTGGGAAACTGACGGTGCGGTGGTGATTTTCAGGGCAGGGCATGGTGGTTTCGGTCCGAAGGCCCGGGCCGTGGATCATGCCATCGGCGGGGCCGCCGGTCGGGCGGCGTCGGCACCGCGGTTCAGCGGCAAGTCGGGCGACTGTATTGATATTCTGGCCCCGGTGGGGCTGAAGGCACGCCGCGTGGTTGTGCTGGATCTGGGGGACCCGGCGGCGTTGACGGCGCTTTCGGCCAGCAGGGCGGGGTCGTCGCTGGCCCGGCATCTGGAAAACGAAGGGGAACAGACGGCGCTGGTTCTGTTCGAAACCTCGGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCACCCGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3307256-3305396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020470.1 Fuscovulum blasticum strain 28/5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3307255 29 96.6 32 ..C.......................... TTGGACAAATCTGGTCAACGCGACATTCATCC 3307194 29 96.6 32 ..C.......................... TCGCCCAGCGCGTCTTCCAGCGCCCAGACCTC 3307133 29 96.6 32 ..C.......................... ATCGTCAGCCGAACGGCAAACAAAATGGATGC 3307072 29 100.0 32 ............................. CCGACTTCCTGGTTCTGCCCGCCGCCGTTGCC 3307011 29 100.0 32 ............................. GACCGGGACGGCACGGAACGGCCCTGGGCGGC 3306950 29 100.0 32 ............................. AACTACCCGTTCGAAAACGCGGCCAACATCAA 3306889 29 100.0 32 ............................. GCTTCGCGCTCCCATGCGGTCCCGATGGTGTA 3306828 29 100.0 32 ............................. ATGCTGCCATGCCGGAATACCTGCCACGGCAT 3306767 29 100.0 32 ............................. GGCTCGCGCTGGTAGGGCGCATTTTCAAAACT 3306706 29 100.0 32 ............................. CCATTTTTGATCTGGCCCACGCCGAATGCCTC 3306645 29 100.0 32 ............................. GCCACCACCCGCAGACCGCCGCTCTTGGACAG 3306584 29 100.0 32 ............................. CTCCAGCGCCGCCGGATCGTCATCCACATCGA 3306523 29 100.0 32 ............................. TAGTATGGCCACCACATCGCGCGCCAGACCGG 3306462 29 100.0 32 ............................. ATTCGCTTGACCTTCAGCGGCGGCACGATTCC 3306401 29 100.0 32 ............................. CCCGGGGCTTCGTGAGGACGGCATTCCAGGTC 3306340 29 100.0 32 ............................. GTCGCGATCCTGATGGAGGATGTGTGATGGCC 3306279 29 100.0 32 ............................. AACCTGGACAACGCTGGCCACCATTTCCGCGA 3306218 29 100.0 32 ............................. AACACGCTGCGGCGGTGCTTGCGGTCTGGTCC 3306157 29 100.0 33 ............................. TTTGGTGCTGACACCCTGCACGATCTGACCCGC 3306095 29 100.0 32 ............................. CCAGTGGCTTTTGGCTGTCTTCCCGTAGCGGT 3306034 29 100.0 32 ............................. CGGCCGATGCCGACCGACAGGCCGGCGGCGGT 3305973 29 100.0 32 ............................. CCATGCGTTCGGCAGGGGCCATTGCGTGATGT 3305912 29 100.0 32 ............................. CCGTCGCCAATGCGACGGCGTTCCAGGAACAG 3305851 29 100.0 32 ............................. GAGTTGCGGGATGAAATCCTTGGCCCCGATGT 3305790 29 100.0 32 ............................. GGCCTCATGCAGCTCTGCGCCACCGGGCCGAC 3305729 29 96.6 32 T............................ GATGTTGAGAACCGTGACTGGCCGACGCGCTT 3305668 29 100.0 32 ............................. GTCCGCAACTTCGAACAGCCGCCCGGCCTGCC 3305607 29 96.6 32 .........................A... GGGTTGCCCGTGGCAGAAATCGCCCGCATGTT 3305546 29 93.1 32 .............A...........A... GACCGAGCCATGCCGGAAGACGGAATGCTACG 3305485 29 100.0 32 ............................. TCCGGAATCACCCTGCCGACCTACTCGACAAC 3305424 29 96.6 0 .........................A... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.1 32 CTGTTCCCCGCACCCGCGGGGATGAGCCG # Left flank : CCTTCTGTCCCGCATCATCCCCGCGATCGACCAAGTGCTTTCGGCCGGCAACCTGCCCCGCCCCGATCCCCCGCCCGAGGCGATGCCGGTGGCGATTCCCGAAGACCCCAGCGGCGACGGGGGCCATCGCGGATGATGGTCGTGGTGGTCACGAACGCCCCGCCCCGCCTGCGCGGCCGCCTTGCCGCATGGCTGGTGGAACTGCGGGCCGGAGTCTATGTCGGCGACTATTCCGCCCGCACGCGCGAGATGATCTGGGATCAGGTGCTGGCCGGTCTGGACGAAGGCGACGCCGTGATGGTCTGGAAGGCCCCGACCGACCAGGGCTATGACTTCCTGACCCATGGCCGCAACCGCCGGATGCCGGTGGATTTCGACGGACTCAAGCTGGTGAGTTTCCTTCCCGAGAAGCCCGCCTGACCTCGACCAGCCAAGGCCGAAACCTCGGTGCGCTCTTTGACATCGTGAATTCCGTGGAGGATCAATCGCCTGCAGAAAGA # Right flank : AAACCTGGGTGCGGAATGTTTGTGCCATAGGTCTGTTCCCCGCAAAGGGCGGTCGTGCTGTGCCAGTACCGGCCGGACCAGTCTGGCCGCCCATGCGCAGATGCTCTGCCATCGCCGCTTCTGAAGCGAAACAAGCGTCCCTTCGCATCGGGTTCAAAATGGCAGCGTTGTCCCGCATATCTGTTGCGGCTGACCTGCCGCCGGCTGTCCCTTGTTCATATCGAAAGTGGGTTTGGTGCGAGGATGAGCGGCCCATCTTGTGCCCGATGCCCCCCAACCGCCGCGCCCCGATGGTCTTGCACGGGCGGGGGCATCGTGATGGCCCGCCGGCACCAGCCATTTGACAACGGGCCGGGGCCCTTGCGGGCGGCCCCGGCCTTTTGGATGTTTGTGTCGAAATGCCCGAACTGCAGGTGACGCCTGACCAGATCATGGCACGACCCTTTGTCATATCCCGGCGATGCACCGCACAGCGGTCGGCGCAGCAATGATCGCAAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACCCGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //