Array 1 204647-205816 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPIA01000015.1 Escherichia marmotae strain 12_Esco_HA-NL 127292P_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 204647 28 100.0 32 ............................ TTGCACCATTCTGGTGTTGCAAACGGTTTATT 204707 28 100.0 32 ............................ AGAGACAATGCCGGACATACAGACACGGGAAC 204767 28 100.0 33 ............................ GCTCGCACCACCAGCGCCACCACCCACACCGAT 204828 28 100.0 32 ............................ GAGATGTTCCCCTGGCGGCACCCGGTTTTATA 204888 28 100.0 32 ............................ TGGTGAAAAACTTTCCCCTCGGCCTGCCAGTA 204948 28 100.0 32 ............................ TCAACCGCTACGCCTCCCGCATGGAAACTGTC 205008 28 100.0 32 ............................ ACTGTCCGCGATAATTACTGATTATTAAAATG 205068 28 100.0 32 ............................ AGCCGAAATAGAAAATCGCTCGTTTGTATTCC 205128 28 100.0 32 ............................ GCCGTTCGATATTTTACGCCCGCAACGCCTGT 205188 28 100.0 32 ............................ ATCGCCCCAGCAATACCAGCAGCGGCTTTCTG 205248 28 100.0 32 ............................ CAGGTGAGCCGCGATACGACCGCGCAGACGTT 205308 28 100.0 32 ............................ GGTACGCCGTTGCTTGCCGCTGTGGTGAGACC 205368 28 100.0 32 ............................ TTGACCGTGCGCGGGTTCAGAACGCCGTCGTC 205428 28 100.0 32 ............................ ACACGCAGGAAGAGATCCGCGAGGCTATCAAC 205488 28 100.0 32 ............................ AGCAGTTCAATCGCTGGCTCAGGCGTCTGAAT 205548 28 96.4 32 ................A........... AGGAGCATTTGCGGCAAGGCCTGGTTGTTGCT 205608 28 100.0 32 ............................ ACGACGCTGTCGCGCTGGCGTCGGCGTGGAAC 205668 28 100.0 32 ............................ AAAGTTAAAATCATAACTCAGGTTTTGAGGGA 205728 28 100.0 32 ............................ AGCATCTGCATGGTGCCCGTGGTCTTAACAAG 205788 28 89.3 0 ..C.................T...C... | C [205811] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAATTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 220105-221333 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPIA01000015.1 Escherichia marmotae strain 12_Esco_HA-NL 127292P_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 220105 28 100.0 32 ............................ TCGCAGGGCTTGCGGGAGAAGGCAGTGAATTA 220165 28 100.0 32 ............................ CATAATAACACCAAATATTTTACTGTTTAAAT 220225 28 100.0 32 ............................ AGCACCGTCAACCTCACCCACCCACGAAATAT 220285 28 100.0 32 ............................ GCAAAGGGTTTTCGACCATTACCCAGATAATT 220345 28 100.0 32 ............................ GGAGACGATATCCGTAGCCGCAGACACAGCAG 220405 28 100.0 32 ............................ GATGTGGTGAGAAAGTTGCTCCGCCAGAGTGT 220465 28 100.0 32 ............................ TAATCTCACTGCTACTGTGCCAGCAACTGGCG 220525 28 100.0 32 ............................ GAAAGTGCCTTGGCGCTGGCGGTAAATTTCGT 220585 28 100.0 32 ............................ AGAGGGCGCGGTCGCGCCCTTAAGGTCAAAAG 220645 28 100.0 32 ............................ CTGGGTTATCTCCACGCTCGCCCGGTTAACTA 220705 28 100.0 32 ............................ TGAAAATAACTTCTGATATTGTTGGCGATGGT 220765 28 100.0 32 ............................ TTGGGCCATTGCGATAGACGCTGCCGGTATTG 220825 28 100.0 32 ............................ GCAATAAACCGTTTGCAACACCAGAATGGTGC 220885 28 100.0 32 ............................ CGTAGGGACGCCGTAACCGCCGATTACATAGT 220945 28 100.0 32 ............................ TGTACCTGCGCTTGTTGCAGCGGGTGCTACGG 221005 28 100.0 32 ............................ ATAGTGCGCAACGTGCGGGAGTCCATACAGAT 221065 28 100.0 32 ............................ CCCAGATAGTTGATAACTTCGTCGCTGTCAGC 221125 28 100.0 33 ............................ CCAGCCAGCATGATTCCGCGCGTTAATGTTGGA 221186 28 100.0 32 ............................ TGACGTAATAAATGCAATGCAAATGCTCGCTT 221246 28 96.4 32 ...........C................ TCGCTCCGCCAGTGCAACTGGTAATAGAGTGC 221306 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACATGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTTAATTGTTTATCAAAAACTATGCAGAAAATATGAGATTGAAGAAGTAACAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGGTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : AATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //