Array 1 389-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVY01000021.1 Escherichia coli strain VREC0284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 388 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 328 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 268 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 208 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 148 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 88 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 556887-554517 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVY01000001.1 Escherichia coli strain VREC0284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 556886 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 556826 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 556766 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 556706 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 556646 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 556586 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 556526 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 556466 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 556406 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 556346 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 556285 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 556225 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 556165 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 556105 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 556045 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 555985 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 555925 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 555865 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 555805 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 555745 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 555685 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 555625 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 555565 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 555505 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 555445 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 555385 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 555325 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 555265 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 555205 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 555145 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 555085 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 555025 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 554965 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 554905 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 554844 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 554784 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 554724 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 554664 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 554604 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 554544 27 92.9 0 .......................C-... | T [554525] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 566334-565944 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVY01000001.1 Escherichia coli strain VREC0284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 566333 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 566273 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 566213 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 566153 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 566093 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 566033 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 565973 28 85.7 0 ....................T...C.CT | C,A [565947,565950] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //