Array 1 2054-2692 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGZ010000017.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
2054 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT
2115 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC
2176 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA
2237 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG
2298 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC
2359 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC
2420 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
2481 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
2542 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
2603 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
2664 29 96.6 0 ............................A |
========== ====== ====== ====== ============================= ================================ ==================
11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 28394-29582 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGZ010000017.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
28394 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC
28455 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA
28516 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC
28578 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA
28639 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG
28700 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC
28761 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA
28822 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG
28883 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA
28944 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA
29005 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA
29066 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG
29127 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC
29188 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA
29249 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC
29310 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA
29371 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA
29432 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA
29493 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA
29554 28 72.4 0 .AA........C..T....A..-.C...C | T [29573]
========== ====== ====== ====== ============================= ================================= ==================
20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//