Array 1 3514-2636 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJCKY010000018.1 Klebsiella pneumoniae strain ME30, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      3513	    29	 100.0	    32	.............................	GGGGCCAGCTCCCGGACGAGAAATGTGACGCC	
      3452	    29	 100.0	    32	.............................	CGATTACGGAGTCGTTCACAAACCGACCACCG	
      3391	    29	  93.1	    32	............TG...............	CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG	
      3330	    29	 100.0	    32	.............................	CAGCGTCTGAACGGACGAAACATCCCTGTTGA	
      3269	    28	  89.7	    32	.....-......TC...............	ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC	
      3209	    28	  93.1	    32	.....-......T................	CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA	
      3149	    29	 100.0	    32	.............................	GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG	
      3088	    29	  93.1	    32	............TG...............	GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT	
      3027	    29	  93.1	    32	............TG...............	TTACTTTTTGGCAGTTGGTAAAACACTTTTAC	
      2966	    29	  89.7	    32	............TGA..............	TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA	
      2905	    29	  96.6	    32	.........................A...	CACTACCAGATCCGAATGGACACCCGTAATGA	
      2844	    29	  96.6	    32	.............C...............	TGACTTTTAAAAAAAATCAGCTGAAACAGCCG	
      2783	    28	  89.7	    32	.....-......TG...............	TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA	
      2723	    28	  96.6	    32	.....-.......................	CACTACCAGATCCGAATGGACACCCGTAATGA	
      2663	    28	  89.7	     0	..............C........-....A	|                               	
==========	======	======	======	=============================	================================	==================
        15	    29	  94.7	    32	GTATTCCCCCCGCATGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTATTTTTAGGTGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCAAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC

# Questionable array : NO	 Score: 5.41
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCATGCGGGGGTTATCGG
# Alternate repeat :   GTATTCCCCCCGTGTGCGGGGGTTATCGG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.74,5.18   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//