Array 1 1532783-1531473 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003181.2 Granulibacter bethesdensis strain NIH3.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1532782 29 100.0 32 ............................. GGCGTGGTGTGAGTGGCGGCATCCGCCATCTG 1532721 29 100.0 32 ............................. GTCCTGCTGAGAGATGCCGGGAGGGGTGCAGT 1532660 29 100.0 32 ............................. ATGTCTGATACAATCAGAATTCAAATTCTACC 1532599 29 100.0 32 ............................. GACTGTTCGTTGTCCCATGGGGTCGTCACGAG 1532538 29 100.0 32 ............................. CGCATCTTGCGCGTCTCCTTCGCCCAGCATTA 1532477 29 100.0 32 ............................. CGACAGGAATTGCGGAACGAGCTAGAAAATGA 1532416 29 100.0 32 ............................. CCGCCCCTTTGTGCTCCCGGCACTTAAACACA 1532355 29 100.0 32 ............................. AACTCGCGCCGCTTTTCCCGCAGGTGGCGGCG 1532294 29 100.0 32 ............................. GTCGGCAGTCTGGACAGTGCCGGACGCCGGAC 1532233 29 100.0 32 ............................. GGGCCGGCAGCTCAGTCAGTCCGCCGATCTGG 1532172 29 100.0 32 ............................. GTCCATCCCTTGTGAGAATATTTGTTTCATCT 1532111 29 100.0 32 ............................. CCTACTCGCAGTATACAAATCAGCTCTTGGCA 1532050 29 100.0 32 ............................. CCGGAGGATGTCAAAAAAATGCCCCCCGTCTT 1531989 29 100.0 32 ............................. CGGAGATGGCCAAAATCAGGGCCGCCGAAAGA 1531928 29 100.0 32 ............................. TCATCAAAAACTTGGTGAAAAAAATGACAACA 1531867 29 100.0 32 ............................. TGGTCCACGCTGAGCCCACCGGCCCACTGCAT 1531806 29 100.0 32 ............................. GTCAACTTTGCGAATTTTGATGAACTCGGCCC 1531745 29 100.0 32 ............................. GCCGCTTGATCATCGCCTTCATAGTGGACGTA 1531684 29 100.0 32 ............................. AGTATCCCGCGTCACCGGGAGTCCAATCGTCT 1531623 29 100.0 32 ............................. GATTTCGTCATTATTCGCGTTCCACCACATAT 1531562 29 100.0 32 ............................. CCGGATCGTAGCATCCCTCGATGGAATTGAGC 1531501 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : TCGGACGGGACTTCTTGGACGTATTATTCCCGCGATTGAGGACGTTCTTTCCGCTGCGGACATTCCCCGTCCCGAGCCCCCACCCGAGGCTGCTCTACCCGCTTTTGACGAAGAAAAGTCTGGCGATGAGGGCCATCGCGGATGATGGTTGTGGTTGTCACCAATGCGCCGCCACGCCTGCGTGGCAGACTTGCTGCATGGCTGGTTGAAGTGAGGGCCGGTGTCTATGTCGGCAACTATTCGGCTCGGACGCGTGAAATGATCTGGCGCCAGGTGACGGAAGGTCTGGAAACAGGCGACGCCGTCATGGTGTGGAAGGCCCCAACGGATCAGGGATATGACTTCCTCACTTTTGGTCGCAACCGCCGCATGCCCATTGATTTTGATGGACTGAAGCTTGTAACTTTTCTTCCCGAAAAGTCGGCCTAAAAACCTCTTTTTCTGTCGGTAAGATCTTTGACAATGTAAAAAATATTTTGAATCAATTACTTATGCGAAGA # Right flank : GCGGCACATCTGCACCGAGCGCCAGAGGAGCCGTGTTCCCCGCCTGTCAGCGAAGGCCGGATGAGTGACCACAAGGTCGGCAATCTCTTCGTCAAACTCAAGGATTGGCGGCGTATCAGAACTCGTTACGACAGATGCGCACATACTTTCTTCTCAAGCATATTCATCGCAGCAGCAGTCATGTTCTGGCTATGATTTAATGAGTCCTGAGCCTAGACAGGTGGTGTAGAGAATACCCATCTTCATTGCTGTTTTCTTGATCCAATTCGGTCAGCACGTACGCCAAAGAAGCCGATCTTTGCAGCGGTCAAGATCATGGCCGTTCCGCAAGATGCATGCTTGATAGTATGCTCCCAAACCAGTTTTCTGTGGCCTGTCCAGCTGCCAATCGATCTCCTTAAACTCTTGCTGAAGGGCCTCCCCCACAGTCTTTGTGTGGAATGAGGACCATAAATTCTAATATACAAAATATAATATATATATTATATAATATGTTTAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1541736-1542007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003181.2 Granulibacter bethesdensis strain NIH3.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1541736 28 100.0 33 ............................ GAAATGCAACATAAGTGACGCCAGACAACACTG 1541797 28 100.0 33 ............................ CTCATGGTAGGGGAATAACCTACCAGCGCAGGA 1541858 28 100.0 33 ............................ TGGCATGGGTCAAGAGATGACGCGGAAACTCTG 1541919 28 100.0 33 ............................ TCGCAGCCCAATCGCGGCCGCATGGTGGGGAGA 1541980 28 92.9 0 CC.......................... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 33 GGACTATCCCCGCGCACGCGGGGGAACC # Left flank : AGCCTTTCCGCCACCGCAGCAACATCAAGCATATGAAAGGCTGCCGGATGTTCAGGACCATCCGGAGTGACCGAGCTTTTACCCGGCCAGTTTTTCCACTGCATTGCGCAGCTCCATCAACGTAACTGTCCGGAGATATTTAATCTCATGGATGGGTAAAAATTACGGCAATATAACAGACACAGGATTAAAAGGTGCTTCGGCAATCCTGGAGCATGCACCACCCTACACTTCTCAGGAAGAGGCGGACCAAAGGTGCGTTGATATAATAGTTGCTACGCTCTGAACGGTGCTTGGAAAGCAGACCTTTCTCCGAAAGCTGATCGGCATATTTACCCACCGTCTGACGCGCTATGCCCAAGTCGGACTGAACAGACTCGATTTTCGTATAGGGATGGCGGAACAGGTGTTCAGCAGCGTCTTGCAGTAAGTCTTTTACAGTTCTGTCCGCATCGGCCGCTTCATGGTGGCCATCTGCGCCCACATGCTCTCGATTAAAA # Right flank : CTCTAGGGCTGATGTTATTGATTTCAAAGAACAATCCCTATTTTCCACATTTTGAGAAAAATGCAAGCCGGCTTTTTCAGCGCCGGTAAGGAAGGGGGAGAAGCAAAGCAAGCGGCACCTTGATCAACCCCTGCTCCCCCGTAACAATGACCATGGTGGAAGGGGCAAAATCCGCAAACATCTCCCGGCATGCACCGCAAGGGGAGACAACGGCAATATCCTGATCGGGTTCATCCTGTTTGGGATGACGGACGGCAACCACCGTTTCGATATCAGCCGCCCCTTCCAGCTTGGCCCGGCCCAGTGCAATCGCTTCTGCGCAAATCTGCAAACGCCCCACCGTCGCGCCAAGATGAAGGCCGGTCCATATACGGCCATTGGCATCCCGCAAAGCAGCTGCCACCGTATGCCATAATGGGCGATAATGCTGCCGCATGACCGCCCTCGCCACCTCAACCAGTTCAACGTCAGCCCGGTCCAGCGGGCACGCTGCGGCATCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACTATCCCCGCGCACGCGGGGGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 1880120-1879665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003181.2 Granulibacter bethesdensis strain NIH3.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1880119 28 100.0 33 ............................ GTGGGGACGTGACGTCTGTAACGTCCCCATGAA 1880058 28 100.0 33 ............................ GCGCAGCCGCGTCATCGTCTTCGGCACCATGAT 1879997 28 100.0 33 ............................ TCTTGGATACACGATTACCATCAAGGAATACAC 1879936 28 100.0 33 ............................ CAAGGTTGACGAAGGTCTGACGGGCCAGCGGAT 1879875 28 100.0 33 ............................ CGCTTTGGTTCGGAAATCACCTCGGGCGGAGAA 1879814 28 100.0 33 ............................ TCTCCGATGATCGGGTTGCTGCAATCGTTCGGT 1879753 28 100.0 33 ............................ TTATAACCTGCGAGGAATATCTGAGAAAGCCAG 1879692 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : ATTGCTGCGTCCGGCCTGATGTTTGAAGAGCAATGCTTTTTTGGTCCGGCTTTCAAGCCATCTGGGTGCTCTCGGTAATGAAAGTGGAAAGGTCTTTCCGCACAAAATCGATTTTGATGTCAGGAGGGTGGAGCAGATTATTTAATATATCCTTGCGCAGCCTGCGCTTCATGCAGTTCGTCCGGGCTTTGTTCCATCAATGATTGCCAAGCATGTTCTGGATGTTCCGCCAACGGGTGAGCGTATAGAGAGCCAATCTTCTCATGCCCCTTTTTAATCCTGCACCCGTTGCAGAAGACGATCAGACGCGTCTTTAATTCTGCATGAGGAAGTGGGAGAGAGGCAGGGTTGATATAGCTCCTAACCTGATTCTGTTCTGATTGTGATGCTCCGAAGGAAATTATCGATGCCGGTGGAGTGCTGCTGCTTCAGAGAAGTTAATTTCTGAAACATTATGTTCTTTGAGATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : CCACTCATCATAATGGATCGCTACTCTCCCGCCGGGGGTGTGCAAACCGCCCCCCGGCCTGATACACCCGGGTGCATGGATGCACGCCCGCTCGATCAGGTAACGGATCAGTCGCCACCCCCACACGCTCCGCCAAAGCGGAGAGGTAAAGGGGCGCGGAAGATCAACGTGGAGTTGGAGCCGACCGCCCTCGCTATGATGGGGCGGCTGTGGCGGGAGCATATCGCGCATCACCGTGTTCGTATGCTGGTGGTGATCCTGCTGACGGCGCTGATGGCGGGCAGCACGGCGCTGTATCCGGTGGTGATCCAGCATGCGATCGACCTGTTCAATGCCCGTGACCGGCGGATTTTGTACCAGATTCCGGTGCTGGTGCTGATCGTCACCGCCATCAAGGGCGCGGCGATGTATGGGCAGACCGTCTCCATGCAGCAACTGGTGCTGATCGTCATCAGGGAGTTGCAGGAGCGTATGTTCAGCCACCTCGCCCATGCCGATCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 1958039-1958920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003181.2 Granulibacter bethesdensis strain NIH3.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1958039 28 100.0 33 ............................ GTGTAACGGTTGTATGGCTGCCCGGTAATCTCG 1958100 28 100.0 33 ............................ CCGAGGCGCTACTCCGGAGCGGACTGGGCATAC 1958161 28 100.0 33 ............................ TGGAACCTGAATCACGCGATGTGCGCCTGCCAA 1958222 28 100.0 33 ............................ TAGCGTGCAGGAGACAAGATTGAGGTCTTTGAC 1958283 28 100.0 33 ............................ CCCGTTTGTATTCCAGACGATCCAGTCCATTGA 1958344 28 100.0 33 ............................ CGTGGGGAACGTCATCAAGTATGTCATGCGCTA 1958405 28 100.0 33 ............................ TCTCCCAGGGACAGACTGGAGGGGCCTCAGTGG 1958466 28 100.0 33 ............................ TGTTGGGGATAGCATTACGTTTGGTAACGGCTA 1958527 28 100.0 33 ............................ CAAAGCATGATCGTGAAGGCGGCGTCCCATTCG 1958588 28 100.0 33 ............................ TTTCTCCAGCGGAAATTGTTGACTATCTAAACC 1958649 28 100.0 33 ............................ CCGGAGATGGTCGTGTCGGGACTGCCCGATCGC 1958710 28 100.0 33 ............................ CGCGATTGACGGGCTGAACACTGGCAGAGACGG 1958771 28 100.0 33 ............................ CCTCGTGCACTGCCCAGCTAACTACTGCAGCCA 1958832 28 100.0 33 ............................ TCGCTCTTCTTTTTTGCAATCGTGGATGGCGCA 1958893 28 92.9 0 ..........................TT | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.5 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : TGGCCATGAAAATATCGAACGTCTCACCCGACGCCAGACTGGACGCGTTCTGGCAGAGCGCTCCGTCATTCCAAAAATGATCGAGCGACTGAAACAGCTTTTCGAAAAAGAAACGGAGGCCATCCCCTTTCTCGAGGATGATGAATGATGCCGGCCACTCTGGTCATTACAAAAGATGTGGAAGCACGATATCGTGGCTATCTGACCTCGATCATGCTGGAGCTTTCTGCTGGCGTTTATCTGTCTCCGCAACTATCCTCGGCGGTGCGTGAGCGCACCTGGGCGGTCCTGTCGGAATGGCATTCCGAACTGCGCCGTGGTGCCATCGTGCTGGCATGGCCCGATGCCAAATCCCCCGGAGGCATGGCAATCCGCACCCTTGGCGACGCCCCCAAGGAGATTATCGATGCCGACGGGGTGCTGCTTGTTCGGAAAAGTTAAGCTTTGAAACATACCGTTCTTTAATATTGTCAATCAATATCAATGTGTTATAGGTAAGA # Right flank : TCTCGGCAATGTCTGCGAGATGGCGGAGAGGGTGGGATTCGAACCCACGGTACCCTTTAGGGGCACAACGGTTTTCGAGACCGTCACCTTCGGCCACTCGGTCACCTCTCCGTTCTGGGTCTCTTAGAGCAGGCGAAAGCCCCCGCCAAGAGGCTGTAGCAGAAAGATGCCCCCTTCCCTTCCGGCCCGGTTCCGTCCGGCCCGAGTCCGAATCGAAGCCACGGCAAGCGAGGAGTCCTCCTATCCGCTGAGCAAACAGCTCGTTCGGGCTGCCAGCACGGCAGATATGCCATGAAAATGGGAGCCATGCAGCAAGGAATGTTTGACTTGTGGCGTATGACCGGTATAACCCGCGCCTCTCGGCCGCCGTGCCTCCCGCTTGTCGGGGTGTTCGGAGGCCGCTCGGCGTTGACGGGATGGCTCCGTCGTCGCGGAGCCAGCATTTGGGACCAGAAGCGATGTTCGCAGTTATCCGCACTGGCGGAAAGCAATACCGTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //