Array 1 361-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTG01000253.1 Geobacillus stearothermophilus strain FHS-PHGT51 scaffold_255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 360 30 100.0 35 .............................. TGGGACGTCAACGCTAAACGCGGCAAGCCATCGAA 295 30 100.0 39 .............................. TACAACGTTTTGGCTGCTATTAATTCAGAACCGAGGAAG 226 30 96.7 37 .........A.................... ATTATCGTCACTGTGATGTATGTGTATCGTAAGCTGA 159 30 96.7 36 ..........................T... TTCGAGACGCTCCCAAATATGGTCGTCGACGATAAA 93 30 100.0 35 .............................. TGGGACGTCAACGCTAAACGCGGCAAGCCATCGAA 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 97.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CGAGACGCTCCCAAATATGGTCGTCGACGATAA # Right flank : A # Questionable array : NO Score: 8.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2450-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTG01000055.1 Geobacillus stearothermophilus strain FHS-PHGT51 scaffold_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2449 30 100.0 35 .............................. TTTCGTCGTTGGCATCTGTTGGCTTGTCTGTGATG 2384 30 100.0 36 .............................. GAGTCTCACCAAGGGCAGGGAGATCACCAAGGCAAA 2318 30 100.0 36 .............................. CGTAGTTCCAATGCGCGACGAAACATACGCGCCTTT 2252 30 100.0 38 .............................. GAATCCGTTTAATTTGCCAGTTGATGCGCTTGCCGGAC 2184 30 100.0 37 .............................. CCGGATGAAAAAAGAAAACTCATCAAGCTCAAGTATT 2117 30 100.0 35 .............................. ATAGACGCGCCGCCTAATAAGGTAGTGAATCACAT 2052 30 100.0 38 .............................. AAACGGAGATCGCGAAATTCCTGGACCAAAAAATCGCA 1984 30 100.0 39 .............................. GCGTACAGTCGCAACGTTATGTTCGCTTTGGCTCGGACG 1915 30 100.0 36 .............................. AACGCCCTTATTTGCCCCGTATTCGCGTTTTAGCCC 1849 30 100.0 36 .............................. TTTCGCCGTCACAGCGTCCATGCCCATCAGAAGTAC 1783 30 100.0 37 .............................. AATTTTCCGCTAGGTGTCGGTACTTATCACCTAGAGT 1716 30 100.0 39 .............................. GCAGAAAAGTAGAGGGCGACATTCTCGACGCGATCGCCC 1647 30 100.0 36 .............................. ACATATTCATCTATTGTCTCATAGACGTTAACCTCA 1581 30 100.0 37 .............................. TCGTCTTTCGTTCCCGGCAAACCGAGATCGACGATGT 1514 30 100.0 39 .............................. TCCGATGAAGTTCCTCTTGGTAGTCCTGTGGGACATACG 1445 30 100.0 37 .............................. AATCGGGGAGTTTGTCGAACCCGTTTCGTATTTATAT 1378 30 100.0 36 .............................. TTTCTAGATTTCGTTTGGGAAACCAAGCTCCTCCCA 1312 30 100.0 37 .............................. TATTTTGGATGCGCCAATGTTGATCGGAATGGACTTG 1245 30 100.0 39 .............................. TACAACGTTTTGGCTGCTATTAATTCAGAACCGAGGAAG 1176 30 100.0 37 .............................. ATTATCGTCACTGTGATGTATGTGTATCGTAAGCTGA 1109 30 100.0 36 .............................. TTCGAGACGCTCCCAAATATGGTCGTCGACGATAAA 1043 30 100.0 35 .............................. TGGGACGTCAACGCTAAACGCGGCACGCCATCGAA 978 30 100.0 37 .............................. CCGTCACTGTCCCGCTCCCACTGCAAGCCGGGCAAGT 911 30 100.0 39 .............................. TTGGTCGTCCTTGGCGCTTCTAGGGTGCTTTCCCCTCTC 842 30 100.0 38 .............................. CATGCAAACCTTGAAGACTTGGAAGACATGGAAGAAAA 774 30 100.0 37 .............................. ATTGTCTATGACAAAACACAGAACGGGTTCAAGATCC 707 30 100.0 38 .............................. TTCTCAACGAATGTGTCATTGATATTCTTGGTGATAAA 639 30 100.0 34 .............................. ATCCACATCAACACCGACTTTTTTTGCGTATGAA 575 30 100.0 35 .............................. TCGGAAAGGGGAATGAGTGATGACATACACACCGA 510 30 100.0 36 .............................. CTCCTATATGCGCAGCAAATGGTTGAGCAAGAACGA 444 30 100.0 37 .............................. TCTGACAAAAATTTAGGGTTCATCTCAGTACTAGGGG 377 30 100.0 38 .............................. TTGTACCGTGCCAATTGACGCGCGACATCCATACGATC 309 30 100.0 34 .............................. CCCAATGATCGTAAGGAAAAAGCAACGCCTTTGC 245 30 100.0 39 .............................. CTACAAAATCATCGTCGTAATCTTTTGCGTAGCGAGGCG 176 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCATGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGGG # Right flank : CTTTTTCCATAAAATATCTTTTTTGGTTCATCACCAAAAGTTGTACTTGCACCTGTCATGAAAGTATGTTAGCTGTTTCTAGCCGAACCCGCAATGCAAAACGCTGGATATTTCTGTATCCGTATCCCCGACGTTTCATCAGCTTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10689-13380 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTG01000056.1 Geobacillus stearothermophilus strain FHS-PHGT51 scaffold_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10689 30 100.0 36 .............................. TCGGAATGCGCCGTTCAGCGGCTGCCAACATCGCCC 10755 30 100.0 36 .............................. TATTGCCTACCTGTTTTATGCACGATGTGAGCCAAA 10821 30 100.0 39 .............................. TCGTTGAATTGGGCGATGTCCATTTGCTGGGCGGAATCG 10890 30 100.0 36 .............................. TATTGCCTACCTGTTTTATGCACGATGTGAGCCAAA 10956 30 100.0 38 .............................. GAATGTAGTAAGGGGCTGATGCTATGGAAGAAAAATTC 11024 30 100.0 37 .............................. CGATATGCGCCAAAAAATAGGAGGTGTTGAGCTTGGC 11091 30 100.0 39 .............................. TCGTTTAGCGCTGTACAATCGGCGCGATTGGGCACATAT 11160 30 100.0 36 .............................. AAAATTTGATGTAAACACGTAGTTTTTTGATGATCG 11226 30 100.0 37 .............................. AATGAATAACATGAGGTCGTCATGCTCTCGGCGCTCC 11293 30 100.0 35 .............................. TAGATAACCGATTTTACACCAAAAATGTTCTCTAA 11358 30 100.0 37 .............................. ATGACTTTGAGGGGTATTTTTCTCTTGGCACTGTTGA 11425 30 100.0 35 .............................. ATTGACTTCATCGATCGTCCCATACGCCTCGACGC 11490 30 100.0 37 .............................. GTACTATTTTTTTGTAACGAATGTGTCTGACGAAAAA 11557 30 100.0 35 .............................. ACTTTATGGACAGCGGTCTTCTTCCGGGCGTTTTC 11622 30 100.0 39 .............................. CTACAATGTTCATGAAAATCATCCTCCCTAGTTTCGTTG 11691 30 100.0 35 .............................. GTCATGCGAATGTCGCGGATTTTGTCCACAATTGC 11756 28 93.3 37 .......................--..... CGTCGGTTTTGGCAGCGAATTCGTCGAAAAGGCCAGC 11821 30 100.0 36 .............................. AAATCGGGAAAATTGATGAAAGTCAGTATATCTCCA 11887 30 100.0 38 .............................. TCTTTCCAAAAGTGCGGCCCGAACCGCTCGGCTCGTTC 11955 30 100.0 38 .............................. CTCGCTTCGCACTTGCTTTGGTGAATCGTTCAATTTGC 12023 30 100.0 36 .............................. GATTCTCACTACTTGGACGCGCTTTTTCCCTTTGAC 12089 30 100.0 37 .............................. TTGTATTCTTCTGCGGTAATTTCGTAGAGGCGGATAC 12156 30 100.0 36 .............................. TTTTACCCGGCCGCTTGGAAGTCACTGCACCAACAT 12222 30 100.0 36 .............................. CCTAGAAGAAACGCTGACTATTATAAACAAATCGCC 12288 30 100.0 36 .............................. ACCAACGTATTTTTTCCAACAATACACGCTTTGCAA 12354 30 100.0 34 .............................. CGAGATGACGCAACCATTCCAACCAGAGCGACAG 12418 30 100.0 35 .............................. CCCAAAACTTGCTGAATCATCGAGAGTACAAAGCG 12483 30 100.0 36 .............................. CTCAACAAGCGAACCAAATTTCACTGACGGTCCGCA 12549 30 100.0 36 .............................. TCATCGTCGTAATCTTTTGCGTAGCGAGGCGCTCCG 12615 30 100.0 35 .............................. CGGCTTCAAAAGCTAAACGAGCCAGACCCATCGTA 12680 30 100.0 36 .............................. TTTCATCATCACATGCGGTTGAAATTCGATTGATAC 12746 30 100.0 37 .............................. ATTGGCAAACGGACGAGTGACGGCCAGCGTAAATGTG 12813 30 100.0 39 .............................. ACAACGCATGGGACAGTATTAAAAGCTTCACATCGTCTA 12882 30 100.0 39 .............................. ACACAAGAACAATTGCGCATGAAAGACCGACGGATGATT 12951 30 100.0 36 .............................. GTTCTCAATGTGCTAATCACTCAATCGCGGTGAGCG 13017 30 100.0 39 .............................. AACTGGGGGAAATACAACCTCACTAAAGGCGGCAAGCCG 13086 30 100.0 37 .............................. ACAATCCGCAAACAGCGAACGCCGAGGGGTTCTACAA 13153 30 100.0 37 .............................. GATGTTAGGAACTAGCTTTTCGTTGCCCATGATTTCT 13220 30 100.0 36 .............................. AATGTTTTCTATTAAGGTTGATATAAAGTCTATCAC 13286 30 100.0 36 .............................. CCTGTGACAATCCATTCAAAGGCTTCCATTTTCTCA 13352 29 90.0 0 ....C............A.......-.... | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 99.6 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCGATCTGAAGAGGAGGAAGCAAAACGGCGACACGAGGGGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGTTAAAGCAAGGGATGAAGCAAGGACGCCAAGAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACCGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGATGGTCCTTCGCCGTCAAGCCCCACATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAATCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CCTGCGCTAACGTCATAAAACGTTCGGCGCTTTTTTGTTTTCGCCGGACTTATGGGGAGTTGCATGTCTTGTAGTAGTATCGTAATTATGAATTTTATAAAAAACAATCTCGTTTTTTATACCATTTTTTTGTCTATATGGTATAATTAGATTAGTCCAAACGATGCGGAGGGGTGATAGATTGATCGAAGCAATCGCCCGAATCGGAAAGATGGTGCTCGAGAAGCAAGGAGAAGTGTCGGTCATTGATCAGCTGGTTGAGAATCCAGGTTATCCTTCTTGTGTGCTCATTTCATTGCGTGTGGATGGTGAGGGAAACGCTGTCTGGGAAGGATGCGAGGTTGAGGAATGCGGAAGTGATTATAAGAAATATTTGTTTCGTTCCGGATCAACGCGCGGAATCAATTATTCTCCGACAGCGAGAATTACGACGATCGAAAATACATATGATCAAAAAGTTCTCGGATGGTTTCGCAAAGTGAATCGGGTGATGGATGACC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1617-308 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTG01000085.1 Geobacillus stearothermophilus strain FHS-PHGT51 scaffold_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1616 30 100.0 37 .............................. ACTCAGAATACGATTTGCTGCTTGTCGACCATGCGCC 1549 30 100.0 39 .............................. TCGCTCTGCTCGTATTTTAGTGACGGAGGTAATTCCAGC 1480 30 100.0 35 .............................. ATTTCTTTTTTTGCTGTTTTTTTGATTCCGATGAG 1415 30 100.0 38 .............................. CACACCTCCAGCAAGAGATGGTCGATGCAATCGTCTAT 1347 30 100.0 37 .............................. TCATTCAACCAAGCAATGAGACTATCTTTAGAAGCAA 1280 30 100.0 36 .............................. CATAGAATTGAAAAGCGTAATGACAAGGCGGAAGCG 1214 30 100.0 38 .............................. AGACGGTAAGTGGCAGGGAATACTTTGCCGCCGCATCG 1146 30 100.0 35 .............................. AACGTATGGAAGTAAAAATGCGCGACAATGAAGCG 1081 30 100.0 37 .............................. TGAAGCATTCGCCTTTGGTGAAAACATGAGTGAGGTA 1014 30 100.0 37 .............................. TCAGCGTAGAATGTGGTCTCGTCACCCTCTGGTTTAG 947 30 100.0 39 .............................. GTGCTGCGTGGGAGAATATTAAATCAACGACATCGTCTG 878 30 100.0 38 .............................. TCATGAAATTCATGTAAGATTTTCTTCAAATCATAAAC 810 30 100.0 40 .............................. TTATTGCGTTTCATCCATCTTGGCGAAATGCTTGGGTTTT 740 30 100.0 37 .............................. CCAACAAAAACAGCAAAAAATTTGCAAAAAGCACTTG 673 30 100.0 38 .............................. CTCCATTGGTAAAAACATCATACAAGGGTTAGCACGAG 605 30 100.0 35 .............................. TGGTAATGCGTATGTATGGTGTCGATACAACGGAC 540 30 100.0 36 .............................. TTTCGGCTGGGGTCGCTCCTGCGATAGCCCCGACGC 474 30 100.0 37 .............................. ATCGCCTAGCTGATGAATTAGTTTCGGCGGTCAAAGA 407 30 100.0 40 .............................. CAACCAACTCACGGCGATCAACGAAGAATACACACAAAAA 337 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGACGGAAGAAAGAAAACGCAATTTTTTGACCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCGTACTACGGCGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGGTTCACGTTCATCATCGTCATCGTGTGGTGACAATGTTCAAGAATATGTATATTACAGGGTGGCTTGGCTATTACCGCCTCTGTTCTTCACCAGAACAGTTGACATTTTTATATCATGTCGGTCTAGGTGGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTTAAAAGCGAATAAACGGGTCAAGAGATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAAGCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CCATGACGGAACTCCAGCCTATGAGGGATTGAAACCATGACGGAACTCCAGCGTTCATAGTGAACGAAAAAACGTTCTGTAGATGAGCATTTTTCATTACAATAATTTCCATGGTTAGAGAGACAAACAGGGTGCCCCTTACGCGATACGGAGCTGTTTTTTGATCACATCAATGGGAATCTCTTGCTTTGCAGCGTCATAAATGAACTCGACGACGCTGTGGTCTTTCCGCGACCGAAGAAGCTCCAGCCCGGTGGAGAGATTTTGTCGGGATTCGGCGATGCTGTACACGCAGGAGAGCAGCACCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //