Array 1 43879-45500 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPMH01000014.1 Ferruginivarius sediminum strain WD2A32 WD2A32_scaffold14, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 43879 36 100.0 30 .................................... GTCCAGCGTCGGCAGCACGCAGACCATCGG 43945 36 100.0 30 .................................... GGGCGGCTGGACTCGATGTCTAGTCCTGCA 44011 36 100.0 30 .................................... TGGCACCGCTACCAGATCCTGACCAAGCGC 44077 36 100.0 30 .................................... AGTTCGTCCCCGGAACCGACAGGCCGATTG 44143 36 100.0 30 .................................... GAGGTCCGCGACCAGTGCGAAGCCGCTGGC 44209 36 100.0 30 .................................... TATGCAGCCGCGCGGGCCGGCGACACGGCG 44275 36 100.0 30 .................................... GCGGCGCGCAGTCGGTCAACGGCGGCACGT 44341 36 100.0 30 .................................... CATGGGAATGCTCTTGTAGTTCGTGGCGTT 44407 36 100.0 30 .................................... GGGCCGGACGGCTGCCGTACGCTGCATCGC 44473 36 100.0 30 .................................... CGTAGTAGCGTGCCGCGACCTCGGGGCGCT 44539 36 100.0 30 .................................... AATTTGACTGTACGACCGTCTGGAAGCCGG 44605 36 100.0 30 .................................... TCACGCAACGTGAAGCGCACCCAGATTTCA 44671 36 100.0 30 .................................... CCACACGTCCATCGGCTGGATCGTCGCGGC 44737 36 100.0 30 .................................... CCCAACCTCGTCTCACCCCCGAGGTGCCTC 44803 36 100.0 30 .................................... TCGGAATATTCCGGGACGTCCATCTCGCTG 44869 36 100.0 30 .................................... ACTGGTGAGTGTCTGCCCGACTTGCGCCAA 44935 36 100.0 30 .................................... CAGGGCGCGCTGCAGCGCGCGACGCGCGAA 45001 36 100.0 30 .................................... AGCCGAGCCAGTTCTTCACCGTCCGCCGGG 45067 36 100.0 30 .................................... TACCGGCGCGTGCGGTGTTAGGTAGCCTCA 45133 36 100.0 31 .................................... TACGATTCGGTCGAAATGCTGTGGGACGGCA 45200 36 100.0 30 .................................... TATCAGCTTGACGCGGTGTTCCACGACGAC 45266 36 100.0 30 .................................... TGCTCGGCAAAGCGGCTCACCTCCAGCGAG 45332 36 100.0 31 .................................... CGGCGGCGTATTGGTGGATTTCCCGCCGGAC 45399 36 100.0 30 .................................... TAAAGAGTGGTGGCGAGTGATGCCCCGATA 45465 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 30 AGCTTACCATCCCCATGACAGCCGGGGCTACGGAAC # Left flank : CGGCCGCCGCGCGGCTGGCCCGCTCGCTTCGCGACGCGATCGACGGCGGCGGCACCGCGCTTGTCCTGCCGGATTCGATTGGGAGCGAGGACGATGCCGGACGGATGGCGGAAGATGTGGGTTCTCGTATTCTATGACCTGCCGGTGGCGGGGCCGAACGAGCGCCGCGCGGCCCGGAAATTCCACGAGTTCCTGGTGCGCCAGGGATTCGACCGCGTTCACTATTCGATCTACAATCGCTTTTGCGGATCGATGGAGCGCGCCAACACCTATGAGCGCCGCGTCGAAAAGGCGGTGCCGAAGCGTGGCTATGTCTGCCTGCTGAAGCTGACCGACAGGCAGATGGCGAACATGCGGCGGTGGATAAAGGGCGGATACGACCCGCACGAAAGTGCCCAGTTCACGCCGCCAGAGCAGTACAGGTTATTCTGATGCGCCGCGAAGCCTGCACGAAAAACCGGCCGATAAGCCCTCTATCTCAAGAGCTTATCGGCCGTACG # Right flank : CACAAATCAACCCCAGATAATACGTTCGGTAGAGATTGGCATCAAAGTGGCGGGCTAGTCACTTAACTCGGAGTCGGCCCAAGATCGATATGGTTGCCGGTCGAATATCCGCCTTGCGGAGACCTTCCGCAGACGAAAACTTGTAGCCCTGGTCGCCGTTCAGATTGATGGCAGGGAATAACGCCTGGACATAAGCGGCCGCTTCCCTGCCCGTCGCATGGCGAGCGGGCCAGACGTACAGGCGACCATCCGTCACCATTTTCTTCACCTGAAAGATGCGTTCCGCCGTCTGCCCCGGCCAGTAGAGCAGATCGCCTTGCGACAGGGTCATGACAAGCCTTGCACCGGGCTGCGGTGGCTCCGGCCGGTTCCCGTTCCGGGCATGGAACCGAGGCACCACTTCCGCCTGCCATTTCACCTTGCCGTTCCGGCCCGTCAGTTCCCACACATGGTAGAAAGTGTTTCCGCCGGTAATCACGGCCGCGCCCGTGTTGCCTCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCTTACCATCCCCATGACAGCCGGGGCTACGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 90396-93498 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPMH01000014.1 Ferruginivarius sediminum strain WD2A32 WD2A32_scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 90396 33 97.0 34 ................................C CCGGACGGCGGCAGCGCGGGGACGGGTGCGACGC 90463 33 97.0 33 ................................A ACGTTGCGGGCGCCTCCGCTGCGGCACCGGCAT 90529 33 100.0 34 ................................. CCGCCGTGGTCCGTGACCTTATCTATCTAAACAC 90596 33 97.0 33 ................................A AGGATCTCGCCGACGACGTCGAAAGCGCGATCC 90662 33 97.0 35 ................................C TTGGGCAAGGTTGGGAGTCGGGCGATCTGGCGGTG 90730 33 100.0 37 ................................. TCGATCAGATCCTTGATCTCGATCCCGGCATAGGCCA 90800 33 100.0 34 ................................. GCGGCTCGAAGCCGTCCGAAGCGATCTCGCAACA 90867 33 97.0 35 ................................C GCTCGTTGGGGTGCTCGTCCTTGTCCACGTTGTAG 90935 33 97.0 34 ................................T TACCCAGCTTGCGCCGCAGGCGCTTGAGCCACGT 91002 33 100.0 34 ................................. CGGTCTGGACATCGGCCGCGCGGTCAATCGCGAA 91069 33 97.0 32 ................................T TGATCTTGCCGGAGCCGCCATGTCCGCCACGG 91134 33 97.0 34 ................................A GCGGCTACGGCAAGACCACCGCGGCGATCTACGC 91201 33 97.0 32 ................................T CCAGAACCTGCGCGTTGTCTCGGAAGTGAAGC 91266 33 100.0 33 ................................. TCCGCGGGCTCCGGTGCTGGCGCCGGCGGCGCG 91332 33 97.0 32 ................................T GTCTCGTTCGCTTGGTCGTTCGTCTGGTCGGC 91397 33 100.0 34 ................................. TCTGACACCTCGGCGTCGAACACGTCGGCCCAAC 91464 33 97.0 34 ................................A CTCGCTGTGGACGCTTGTTGTCGAAGCTACGCTC 91531 33 97.0 34 ................................T CGCGCGTCCCCGACATCGGCGTCATCGTCCGGGG 91598 33 97.0 34 ................................T CCATCGCGAGGTGAACGGCCACATCCGGTCGCGA 91665 33 100.0 33 ................................. AGCGTCAGGCGGGAAGCCCATCGGGGCATGTGG 91731 33 97.0 34 ................................T CCGCCTTGCGCGCCAGCTTGTAGAACCAGTTCGC 91798 33 100.0 34 ................................. TGTTGGCGTTCGAATAGGTCGCACCAGCCACCTC 91865 33 97.0 34 ................................T GTGGAAGGGGCTAGACAAAGACACCATCGAACGC 91932 33 97.0 33 ................................A TCACCACACCGCTACCAGCAGGATTGGCAATCT 91998 33 100.0 34 ................................. ATAGGTCCGGGGCGTGCGTCGAGCCTCACTACTG 92065 33 97.0 34 ................................A GCGCGGCTCTCGGCGTATGGCAGGATCGCCCTAA 92132 33 100.0 35 ................................. ACCTGAGACACGTCGACGACACCAATGTCGTCGGT 92200 33 97.0 35 ................................T CGGCTTCGCTCAGAGTCCGGTACTCGTGGCGCATG 92268 33 100.0 35 ................................. CCTTCGCCTGCTCGGCCTTGCGTGCGCGCTTCAGC 92336 33 97.0 32 ................................A TGTTCAGGAGGTGCGCGGCGACGACACCCTGC 92401 33 97.0 35 ................................A TCGCCAAGGCGAACTCCCTTGAAGGGGTCAACGAC 92469 33 97.0 35 ................................A TCCACAACAGGGTTTGGGTGCGGTACTGTTCGGGG 92537 33 97.0 34 ................................A GCGCGGCTCTCGGCGTATGGCAGGATCGCCCTAA 92604 33 100.0 34 ................................. TCTGCAGCGATCCTGTGCCAGTCGAGGTCGTCGG 92671 33 97.0 34 ................................A CGTCGACGCCATTGTCTGACCACCCCAGGACTTG 92738 33 97.0 34 ................................T CTTGGCGGCCTCGGAACACGGCGCAAATTTCCAT 92805 33 93.9 34 .....................C..........T GGCGCTTGGGCGGCCTGCGGCAGATGATCGAGGG 92872 33 97.0 34 ................................T CCATGAGTTGCGCCGTGCGCCAGCCAAGAAACTC 92939 33 100.0 32 ................................. GATGCCCTGTTGTCCGCCGCACCACGTCCTGT 93004 33 97.0 32 ................................A ATTCGTCCACAAGCAACGTCACCTTGCGGTCG 93069 33 97.0 34 ................................C TGCACGACCTCGTCGAGCTGATGCCGGGCTATGT 93136 33 100.0 33 ................................. GTGAAGCAGGTGTAGAGATGCTGGAGCCACGCC 93202 33 97.0 34 ................................C ACAACCGGGTGCTGAACTGGGTGCCGGCGCAGCC 93269 33 100.0 32 ................................. TAAGAAGCGGTCACCGCCTTGAAGGCGAGCCG 93334 33 97.0 33 ................................A GGTGCGGCTGCTCCCAGCCTTGCAGGCGCAGGG 93400 33 97.0 33 ................................C TCTCGCTCGTGGTGGGTGACAAGCGGCTCGGGC 93466 33 81.8 0 ..............A.......C.CC..C..A. | ========== ====== ====== ====== ================================= ===================================== ================== 47 33 97.6 34 GTCGCACCCCGCGCGGGTGCGTGGATTGGAACG # Left flank : TGTCGCCGCGCAGCCGGGCCTGGAAAGCCTCGCTGGTCTTGCCCAGGTCGTGCAGCAGCCCGGCCAGCCGCGCCCACTCGCCCAACCCGCAGGCCGCGCCCTTCTCGGCCGCCAGCGCGCCCACCGCCTCCAGATGCTCGGCCAGCGGCTCCCACTCGGCCTCTGGCCGGTCGTCGAGCGAGTGGGCATAAGGCGGCATGCGCGGATGGACCCGTCCGGTTTGCTTCTGACTCGAACAGTCGCTATTCTGCCGGTCAACTTCCAGTCGCGCAACCGCCCTCGCACACATTCGACGCGGCAACTTGCCACGCCGGCAGCCGCCGCGCGGACCCCAAGCACGCACGCAATCCCCGGCAGGTTCGCGCGGAGGCTAAGCCACTGAAATAACGGATTTTCCCTGCTGTCGCCACAGCACCCGAGCCCCCACGACACCGCCCCGGCAGGAGGTTCGCGCAAAACCCCGCATTTTCCCCGCCCACTCAACCGGTTACGCTCAGGGA # Right flank : GCTAAGCTTGCCTCTTGCTTTGTCCCGCCTTGCTCGAACAGGCTACCCCGTACCAGATTACTGCTGTAGACAATCAAGGGGCATTCATGGCGGTGAAATTCAAAAAAGGCTCATCCAGCGACAAAACCAAGTCCGCACCGTACTCGGGAAGTGCACAAGTTTACGAGAAACAGTTATCGGTCCGCCTTCCCCTCCACGTTGTTCAAGATCTGAAGCAGCTGGCAGCGGACAAGAACACCACGCTGCGTGCCGTCGTCCTGGACGCCCTGACCAGCCATTACGGCCTGAACGTGGACGCGAACGAAAAGCAGGACAAGCGCCCGGCAGCCCGCAAACTCCAAGCCGAGCTATATCAAAAGCTGAAGCAGGGCGAGATATCCCTCGATACATAAGCTTGCCCGTCCGGGGGTAAAGGACAGGCCTGTGCAATCGATTGCACATCTGACTGCCGCTGAAGATAACAGCAGATTTCTAACAGTCTGTTCTCTGGCTTCAGAATA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGCGGGTGCGTGGATTGGAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //