Array 1 30839-31651 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKKH02000002.1 Klebsiella pneumoniae strain 3754STDY6170042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30839 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 30900 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 30961 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 31022 29 100.0 32 ............................. GCACCCTCACGTATACCTTTTGCACAGTGTTA 31083 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 31144 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [31198] 31198 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 31259 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 31320 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 31381 29 100.0 32 ............................. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 31442 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 31502 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 31563 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 31624 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.3 31 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 994606-992078 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKKH02000001.1 Klebsiella pneumoniae strain 3754STDY6170042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 994605 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 994544 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 994483 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 994422 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 994360 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 994299 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 994238 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 994177 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 994116 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 994055 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 993994 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 993933 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 993872 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 993811 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 993750 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 993689 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 993628 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 993567 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 993506 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 993445 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 993384 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 993323 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 993262 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 993201 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 993140 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 993079 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 993018 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 992957 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 992896 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 992835 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 992774 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 992713 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 992652 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 992591 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 992530 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 992469 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 992408 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 992347 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 992286 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 992225 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 992164 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 992106 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //