Array 1 305-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000141.1 Paenibacillus massiliensis T7 S7_contig00036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 304 32 100.0 35 ................................ TTGGCCGTACGGGTCTATAGCTGCGACCACATATT 237 32 100.0 34 ................................ CCCTCGGCTTCCATGTATTATTGGATGCGAGATA 171 32 100.0 35 ................................ TCTTGCAGTTGGTTCCGTGCTTGAGTCATCTGTTC 104 32 100.0 35 ................................ TGGATGTCGGCATCCTTTTCGTCGGAATCACCCCA 37 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CGTTC # Right flank : TAGTAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2877-2316 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000018.1 Paenibacillus massiliensis T7 S7_contig00221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2876 32 100.0 33 ................................ ATGAAAATCTCAGTCGAGTATGCCAATTCCCAA 2811 32 100.0 35 ................................ TATACAGCCAGTATCCTAGCAGGCACCTCCCACGG 2744 32 100.0 34 ................................ CACTTTTGGCTATCCGATGCGGGTCACAGCATAA 2678 32 100.0 34 ................................ ATAAAACTGAACGGCTCAGACTCTATGATTTCCT 2612 32 96.9 35 .....................G.......... CCAATATTAATTGTCTTGAAATTATCATCTTCCGG 2545 32 100.0 33 ................................ AAAATTCATCACCTCCCCTCGAAGTACACCCTG 2480 32 90.6 35 .........TG..T.................. TTGATATGATGCTTGTATTTTTGGAGGCGATTGAA 2413 32 90.6 32 .........TG..T.................. CATGACAATTCGAATCCGATCTTGTCTTCCGG 2349 32 93.8 0 .................C.............A | AC [2320] ========== ====== ====== ====== ================================ =================================== ================== 9 32 96.9 34 GTCGCACTCAATACGAGTGCGTGGATTGAAAT # Left flank : TACCTTGATGCTGCTGGAGATCGAGACGGATAGTGAGATCGGCTTTTGCTGGTGGGATGCGGGCGTGCTGCATTTCTTCATTCGTAAAGAGGATCTGCTGGCAGGCAACTTCGACCGGACTTATTGTGCCTTGTATTCGAGCTAGGGGTATAAGGAAATAAAAGATATAAGTGATATAAGTGATATAAGTGATGTAAATGATATAAGTGATATAAGTGATATAAGTGATGTAAGTGATGTAAGTGATGTAAGTTAAATGAGAGTGGATTGTGGTCACTGAGGAGGTCTATGTGGGCATGGGGAATTGCGGGCGTTACTGGTGCGAACCCCAAGCTCACATGAAATTCCCGGGGGATTCGCACCTCAGATTTTGTCGAAATCGAGTCGAATGTGAATAAGTTGTGAACAGGTGGCGTGGAAAAAGCCCGCTCTAGCTTTTATTTGTACGAAAGTGCGGTAGAATGGAAGGTGGAAGCACCTTTTTTACGTTGTTTTCCGCT # Right flank : CTATGTCCATTTTTAAATGTCTCATGTTGCACTTTGTATAATCTCATGGATTAATACAGCTTGTTAAGCTCCAAAATTCTCGTCGTCTAACCGACTAGCAGTCTTGATAACATTACTCTCCGGCACACAATTACTGGATACCAGAAATAACAGGTAAGCTAAAACTCGAAGTAAGAGGGCCCTTATTGTGGGGCCACTCTTTTTTGTTTTCTGCAAAATCATGGTTTCGAGCATGATCTAATCAAGTGCCTGCATCGTATTCATTAGTCGTCTTAAATGTCTTCTATTAATGGAATATTTTGTTTTGAGAATACTAGTGATATAATTAAAGCACTTGTGTATATTAATTCCATAAAACCATAAAAACGTAATTGCGGAGAGGGGTATCTCATGCATACACCCACGATTCGGACAGAAATTAGTGAGTATTTACAGGTTCATAATATGAAAACGAGTGATTTCGCTACTGCTACGGGGCTGAATCCAGGAACAGTAAGTAG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCAATACGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.60,-2.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27844-28273 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000112.1 Paenibacillus massiliensis T7 S7_contig00111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27844 32 93.8 35 ...........CT................... ACGTTCCCATACTCTCACAAAACATCACCCTTTCC 27911 32 100.0 34 ................................ CCTGATGCCTCGACGACTTGCGACACTAGTGTCC 27977 32 100.0 36 ................................ TCCCAACGGTTGCCTATGACCTCGAACTCCTTAAAG 28045 32 100.0 33 ................................ GACTTATCCTTCTTGAACTTTTCCAATACCTTG 28110 32 96.9 33 ...........C.................... TTGCTAGCCAGTTCATAGTCACCATGCTGATGA 28175 32 100.0 35 ................................ CTGTAACGACCAGAGCGTGTTAATACTCATTCGTC 28242 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.7 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TCGTGTCGCTAACGACCTTGATTCAGCTACCGAATGCCTCCTTTATCCTGACCTATCTGGGCGGCTGTGCTGCAGGGGTCCGTCTCCTGAAGGGCAATCGCTTCGGCCAATGGATTAGCGGTATCTCCTTCGTAGCCACAGCTGTCGTGTTCCCTTTCACAGGCTGGGCGATGCTGTACCCGGGAGTCGTGCTGCTAGTGTTCGTACTTATTCGCTGGCTGCGAGGACGAAAATCCATCATAGTTGAGGAAAAGGGTGCACAGACCCGGGCGAGTGTAGCCGAGCAACGGAACGGAAGACAGTAAGGCAGAATGATGAGGTGCGAATGCCAAGCTCACATAATTTCCCCGGGAGATTCGCACCTCAGATTTTGTCGAATTGAAGTCGAATGTGGATGAATTGTGAACAAGATCTATTTTTACAGTCGGGGAAGATTTCCATTTGAACGGATGTACGGTAATATAGGGGCTGGATACAGCGTATTTACGATGTTTTCCGCT # Right flank : TTTCAGCCCCGTTCTCAACGGCAGAATTCCTTCACCTTCGGCATAAAAGACTTTATTGATTCCACATGGCAAGAACCATATCTTCTTCTTGCACGAAAAAAAGAGCAGAATAATCTGCTCTTTTAAAACAAGCTATTCACCTCTACCTTACCTGCTCACTGGAGCGGCACCTATTTCAGAAGATTAAAATCCTCCAATTTGATCCCGAATTTGGATTTGTCCAGGTAGTTGAATGGGCAAAGTAAACATAAATAAAATACTAGCTACGATGGATAGTGTTACCAATCTTTTCATCATTGTTTAACCACACCTTTTCTACGAGATTTAGAAATCCATCTTTAATCTCAGGAAGCGCATGCTCCTGAAAGTGTAAGAATAAACCCATGCAGTTTAAAAAGTAAGTCTTATTATTAATAATATGTGACTTGGACATAGCAATCATCAAATATTTATATCCAGAACTGTACAATGATCGATATAGATAATAGTAGGCTAATTCA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 30587-31288 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000112.1 Paenibacillus massiliensis T7 S7_contig00111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30587 32 100.0 35 ................................ TGTACCTCGCGTATGCAATGTGGATAGCAAGCCAC 30654 32 100.0 35 ................................ AAAAACACCGACTTGTCGGTATACGACAGGCTCCG 30721 32 100.0 35 ................................ TCCTTTCAAACTAAATAGGTAGGTCCGTAGACGTT 30788 32 100.0 35 ................................ AGGAGACTTCCGAGCTTCGCATTACCCTTGATACG 30855 32 100.0 35 ................................ TGAGTTGCATCTTAGACGTAGGAGATCCGTAGTAG 30922 32 96.9 34 ......................G......... TGGACTCACAATGACACCGCTGAAGAGTATTTCA 30988 32 96.9 36 ......................G......... TGCCTTCTTGCGTTCGTCTGCAAGGATGCTTGGACG 31056 32 93.8 35 ............A.........G......... CTACATCCGTATTGCGAGGCAAAAAAGCATTCGCT 31123 32 96.9 36 ......................G......... CCGTCTGGATCAAGGGCAACAAACCCTGTATTGGTG 31191 32 93.8 35 ......................G.......G. ACTCTGGATCTCAATGCAGCCCGAGAGGAACGCAG 31258 31 81.2 0 .....................-.CC..TTG.. | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 96.3 35 GTCGCACTCTACTTGAGTGCGTAGATTGAAAT # Left flank : ATTTAAGTAATTTATACGTTTTTAAGTATTGTCCTACAAATACTTCTCTCATCATCCACAACTTGATCGTCACAATCACCGAGATTGCCATTGTGCAGATACACGCAATTTGCCTCCTTGTACCCTTAATATATCTCAATTCAAAAAGGTGCAAATCCTAAATAGCCTCATAAGTAGCAGCCCGAATTAGTAGCGCAATTCATTGAAGACTATAAAATATACAGTTGTCATGATAGCCAGGATTATATAGCCCAGACATACGCTACAAATCCGTGTGTTTCTGGTATGCATCTTTCCCCGAAATCTTCGCTGGAGTTGGTGCGAATGCCAAGCTCACATGATTTTCCCGGGAGATTCGCACCTCAGATTTTGTCGAATCGAAGTCGAATGTGGATAAAATGTGAACAAGAGTCCGTCTACAAAGCAAACGCCCTCTTCCATTTTGACGGATATACGGTAAAATAGGTGCTGGATACAGCGTTTATACGATGTTTTCCCCT # Right flank : TCTTCAACACGCCAAGGCCAACTAGGCCGCTGCGCGAGGCTCTTGCCCTACACTATCCCTTACCAATGACACGTTTAACGGAGAGTGCAGAATCGATCTGAAGAAGCGGAGCTAAAAGCTTTCTGAAAGAAAGCTTCTTCGGAAGCATAAGCTTCGCCTTTATCCCCAGATTTCCTCCTTTGTAAAAATTTCAAGAAATCTGGGGATAACAGCGATCGGAAGATGATTCTGCATTCGGAGTGGTCCACGTGTGTGAAGGATGATCTGCGTGCCTGAGTGATCTACGCGTCTGAGCCTTCTCCATGCACGCACCCCAAAACAAAAACAAGCCCGCACTCCCCTTCCAAGAGGTGCGGACCCGTCCTATCAACCATGTACTGCATCCCAGCTAAAGAATCCATCCTCTACCTAAATGAAATCTCCCGCTAACGCACTCATACCAGCAGCACAACTAACCTGTGCCTTAAGGCTGCACCATCCGGTAAGCCTGAATGCGATCC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACTTGAGTGCGTAGATTGAAAT # Alternate repeat : GTCGCACTCTACTTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12-316 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000259.1 Paenibacillus massiliensis T7 S7_contig00060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 12 32 100.0 35 ................................ ATTAAATTGATTGAAGACATGCGTGTAAAGTAGGG 79 32 100.0 37 ................................ AGGAACAGTGTCGAGTGTCTGTGTGACACCAGATCCC 148 32 100.0 35 ................................ TTATCAGTCTGTGGAGGTGAAACCAAATGAATTGA 215 32 100.0 38 ................................ TATCAAGTTCAGGTAATTCGAATTCGGGCGGTTCGAAA 285 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 100.0 39 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGTTTTCCGCTG # Right flank : AG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 73510-73342 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000058.1 Paenibacillus massiliensis T7 S7_contig00231, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 73509 33 97.0 34 A................................ AGCCATTTTGGGCCGTGAACGCCGATTAGCGTTC 73442 33 100.0 35 ................................. TGACTTTTTCACGCCCAGCCCCCCCTTGATCAATA 73374 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 99.0 35 CGTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : | # Right flank : CCGAGTGACCGCTACCCTGAGACTGCTCAGCACATGTCGCACCTTCATGAGCGCGTGGTTCAATATCTCTTTTTACATGGAAACAGATGACGATACGATAACCGCACTCTTGGTATAGAAAGAACTTACACGCGCCGATGCAGCGGAGGGTCGGAGGATTTCTGGAGACACGAAGTGGTCGCCTTTCAAGCCCGATTTCGACTACGCTCGCTTTGATCCATTCAGGAAATCGGGCTTGAACAGCGATCGGAAGAAACCTCCGAGCCCGTAGCGATTCCCTCAGAGAACAAAGTCATTTAACAAAATCATTTAGGTAGCCTATCTCTTTTAAAGCAACAGACGCTTTACCAACCCCCTCCGTTCGTGGTATTCTGTTACCAAATAACTTGAAACGCTTTGACGGGACCAGTAAGAGTACATGCGGTGCTCAGAGAGTAAATTCCACAGGCTGAGAGAATTTACCATCCGTATCCTCCGAACCCTACCCCCGAGCGGCCTGC # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched CGTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 729-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000008.1 Paenibacillus massiliensis T7 S7_contig00214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 728 31 96.9 34 -............................... AGTATTGCGGCGCCAGTCGGACATGGCGATGGGC 663 32 100.0 34 ................................ CCATCCTCTTTTAGATGGTTCAGAGCTTCTTGGT 597 32 100.0 35 ................................ AACGGAATTATAGCATAAGTTCAAAATTTTGCAAA 530 32 100.0 34 ................................ CCCTTGTTTGCGGGTTCAGTTGTAGGTTCAACGG 464 32 100.0 35 ................................ ATGGATAGATTGATTAAATGGTTCAAGAGAGTAAC 397 32 100.0 37 ................................ CACTAATCGCAGGATAGTATTCCATACTTATAAAGAC 328 32 100.0 35 ................................ TTTGTTAGTGAATCCCCAATCAAGCACTTGGCTAA 261 32 100.0 35 ................................ TTTGTTAGTGAATCCCCAATCAAGCACTTGGCTAA 194 32 100.0 36 ................................ CGTAAAAATCAATGTACCCAACTGCCGGCCTATTAA 126 32 100.0 34 ................................ CTTAGGACAAGAAACAAACGGCGGAGGTCTAACC 60 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 99.7 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : | # Right flank : TGCTTTCCGGTAGGCTGCAAGATCGATCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5014-4710 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000057.1 Paenibacillus massiliensis T7 S7_contig00232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 5013 32 100.0 35 ................................ ACTACACGAAGTGAATTATATCTACGCGTATCGAC 4946 32 100.0 36 ................................ CTCAAAAAGCATGGGAGTGGATTAAATCTCATCTGG 4878 32 96.9 37 ...A............................ TCCAGCGATAGGATCAAAATAGAGTGCATCCACGTAA 4809 32 100.0 36 ................................ CCATTAGTGCAACATGCTATACAGGATATGTTAGAA 4741 32 81.2 0 ...........TG..AA.T...C......... | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 95.6 36 GTCGCACTCTACATGGGTGCGTGGATTGAAAT # Left flank : ATGTTTTTTGATGGAATGATTACTGGCTTTACTATCGGTTTGTTCTGAGTGGATTGTAGATTGGAGGGCTTTGCCGGTTGGGATAACTGCAATTGGACACTTGCTGGGTTTTCCCTCTGCTACCGTTAGTGCATCTGGTTGTTTTCTACCTACAAGTCAAACTCACATTGCTAGTGTTTGTGTGCTATTAATTTTGAGCTAGAATCTTTGATGCACTCAGGGACATTGAAATCTGCCACGATTAATGGCCATGGCCAGAAAATTAGTAGTATGTTTATCAGAATAAATGTATATCCCAGATGAATTCTGTCCCCCTTCGGTGCGAACCCCAAGCTCACATGATTTCCCTGGGGGATTCGCACCTCAGTTTTTGTCGAAAACGAGTCGAATGTGAACAAGATTTGAACACGCTTCTAAGAAAGCAGCACTTATCCTTTTTATTTTCACGTTTATGCGTTAGAATCAGGAGTATCAACAACTTCGTTACGTTGTTTTTCGCT # Right flank : GAGTTACAGATCGTTTCCGTGGATTCATCCGGACGTCGCACTCTACTTAAGTCGCTGGATGTTCTTTACCTTAATAACACCATTAGAAGGTGTAACTTCCTATCAACTACCGAATTATTATTAAAACGCGCTAGAAAAAAGGGCTTCTTCTTCCCTTTGAACTGTGACCCGTAAAATGGACACCTTGAAAAAAGTGACCTCTTACGGGTCATTTCTGTTTGAATCGGAACATTAAGAGAATTGTAAGGTAACTTTCATGGGATTAAGAGCGGGACCTTCAAAGATCTTTAGCGAAGAAGAGACAACTCAAGCCGTTACCAATGGACATTAAAAAAGATGACTCCTGATGAATTCAGAAGCCATCTGTTGGTTACCTAAGCTGAGGCTTTATTCTCACCGGGCCCACAACTAGTCTACAGTGCATGTAATGCTAAATCAGCTTTTGCTGCCACGTTGAAACCTTTTAAGATGAAATGCCATGTTGTTAACCTTATAACTAT # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10177-9750 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000057.1 Paenibacillus massiliensis T7 S7_contig00232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10176 32 100.0 34 ................................ CATCTCTGGAGATAGCCATGTCGCTGTACCCGTT 10110 32 100.0 33 ................................ TGCTACTGTCAACTTTTCAGGCGGTCGCAATAC 10045 32 100.0 33 ................................ CTCAATCGCTTGAGATGCCACCGACAGCAAGGA 9980 32 100.0 34 ................................ ATCATGCTGGCCATCAGGAATACCCCACTCCATA 9914 32 100.0 34 ................................ CATCCACCGCAAACTTAACGACTGCTGTTAATTC 9848 32 93.8 35 ...........TG................... TGTCGTCTATCATCTGTATCCGTCCTTTCCCATGC 9781 32 87.5 0 ..........................G.TTT. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 97.3 34 GTCGCACTCTACTTGAGTGCGTGGATTGAAAT # Left flank : TGTATGGGGTCGCTAAGGGGCTCGCTATTCGAGCATGATGAACTGCGTGCATGTTATTCGTGAAGAGGCTTCGACTCGGAATTCGTGCATGATGAAGCTGCCGGCATGGTTTCGGGCGTCGTGACGCTGCGGGCTCGGAGGTTTCCTTCGATCGCTGTTAAAACCTGATTTATTCATTAGATAAAAGAGGTAGCGGTGTAAATAAGGTTTTAAAGGCGAACACTTCGTTTCTCCAGAAATCCTCCGACCCTCCGCTACTGCCCTTGCTGATGCTGTAAAATGCAATAGCTATACTGCACGATTGTTAGCTAGCTTTTGGTGCGAACCCCAAGCTCACATGATTTTCCCGGGGCATTCGCACCTCAGATTTTGTCGAATTCATGTCGAATGTGAACAGAGTTTGAACACGTAGCTAGGAAAGCAGCACTTGTTCTCTTTAATTCATACGGTTTTACGTTAGAATTAGAAGTATCGGCAACTTGGTTAAGTTGCTTTTCGCT # Right flank : CAACTGAACAAACAACATTAAGTTTGATCTGCGATTAGTACTAATCGAGCACCTTTCATTAGCATTAATGCATCTAGTCCTCAGATACCAACTTCCTTAGGGGAGATTTGCCAATCACTCTATTAGCTGCACATGGTAGAAGTGAAGTTATGACACGAAAGGAGCCCAGGGGATCTACCCTGAGCTCCTTTCGTGATTAACTATTATTAGCGTGGTAACTCTGGTATTTGCGCTCACTTTCGCTGACAGAAGAACGGTGATCCATTAGAAACTTTTTTGAGCGTAAGCAAAATTCATTGTTACATCTTCATATGAGTAGAAGGTTCAACATTATAAAGTGTTATAAGGCCGACATATAGTAAAATTAGCACTGTCAACACAACTCCAATTACAATAAATATTTTTTTAATACGAACCGCTCCTTCAGTTTATAGATTTGCGGCTCCTCCAGTAATATTGCCCGCTTTATTAATCTGGACCCACTGTTCTCTATTCCCAAC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACTTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 273-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000083.1 Paenibacillus massiliensis T7 S7_contig00215, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 272 32 100.0 33 ................................ TCATCTCCGCCACACCTCATCTGTAAATGATTA 207 32 100.0 38 ................................ ACTGTCATGGATTTAGAAACAGGGTACGAAGAACTGGC 137 32 100.0 37 ................................ CCGATCTTGGGGGCCGTGTAGATGACAGTTATCGGAA 68 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 100.0 36 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GGTGAAAATGGAGCTGTTGTGCGGGGAAACGACATGGAAATGCTATGTGCTAGGAAATGCTATGTGCTAGGAAATGCTATGTGCTTGGAAAAGCTGATTGGGAAGGCTACGTGGAGAGAGGCTACGGGCTCGGAGGTTTCTTTCGATCGCTGTTAAAGCCTGATTTATTCATATTATATAAAAGAATTAGCGGATTAAATCATGCTTTAAATGCGACCACTTCGTTTCTACAGAAATCCTCCGACCCTCCGCTACTTCCGTCGCTAAAGTTACTTTAAAAAGTAGATACCCAAAACTGAGCTGTTTCCAGCTATCTTTGTTGCGAATGCCAAGCTCACATGATTTCCCTGAGACATTCGCACCTCAGATTTTGTCGAAAGCATGTCGAATGTGAACAAAACGTGAACACACCTGCATTTCAGGCTGCATGAAGTCTTCCATTTTAACGGATGTAAGGTAAAATAGATGCTAGATGCAGCGTTTATACGCTGTTTTTCGCT # Right flank : TAGAACGATAAGGACGCTAATGATGGCTTACGGGCTG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7431-6931 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000087.1 Paenibacillus massiliensis T7 S7_contig00220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7430 32 100.0 35 ................................ CTGTTCCTGCTGCACCAATTAAGAAAACTACATTG 7363 32 100.0 36 ................................ TCCGATCAGCAGGCCTTGGGAAACAGCGACCAAGCA 7295 32 100.0 35 ................................ AAACATTAGATGAAGGGGAATTTTATAATGACCGG 7228 32 100.0 35 ................................ CATTTCAGCCAGACCTGGCCGCCATCTGTATAGCT 7161 32 100.0 35 ................................ ATCCTCGCTCGGGAGGGCGACTGGTATGACGGGCC 7094 32 100.0 34 ................................ CCAATTTGGCATTACCTTTAATCCGATCCGCAAG 7028 32 100.0 34 ................................ ATAGAGCTGGACCGACGACATGAGGCGGCGCTTG 6962 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 99.6 35 GTCGCACTCTATACGAGTGCGTGGATTGAAAT # Left flank : TCCGTTGCTGTGGAAGTAGGTGTGAATGATGCTAGTGCTAATTACGTATGATGTGAGCACAGTTGATGGGGAAGGGCGCAGAAGACTGTCCAGAGTAGCTAAGAAATGCGTGGATTACGGGCAGCGTGTGCAGAATTCCGTATTCGAATGTGTGCTGAACGAGGCACAGTTCCGCCGCTTGAAGCTGGAGCTTGAGGCGCTAATTGATAAGCAGACAGATAGCCTGCGCTTCTACAATCTGGGGAACAACTATAAGAGCAAGGTAGACCACACCGGAGCCAAGAAGGCTTATGATATGGAAGGACCACTTATTTTGTAGGTGCGAACCCCAAGTGCACATGAAATCCCTGGGGGATTCGCACCTCAGATTTTGTCGAAAACATGTCGAATGTGAACATAAAGTGAACGCGGAGTTGGGAAACGCTCTCGTACGTCTTCCATTTTACAAGAGTTACGCTACAATAAGGTGAGAAACTAACGTGGAAACGTTATTTTTCGCT # Right flank : ACAGCTCGCCCGGTGTACCCGGTTGATCGCATGGAGGACACACTCTAATAGACGTTTAAATAACGCAGCTTCACATTCATGTCTAGTTCTGGCTGGGGACTCAATAGTCAATTAGCGATAACGGTATCTCTCTTATTCTTTGATATTAAAGTTTTTGTGTACTTGTAATCACATGCATTTAATATAGCATGTGATTATTTACGTGCATAATTTATGCATGTTAGAATATACTTAGAGAGGAGGATGATTTTGGGCTACTCATCACGTAGCATCATTAAGAAGATTGAAGCGGATGGGTGGTACTTGGTTAGGGTCAGAGCAGTCATCATCAGTTTAAACATCATATAAAACAGGGCCTAGTAACAGTGCCACACCCGTCAAGGGATTTAGACCCTAAAACAGCAAAATCCATACTCAAACAGGCGGGACTACAGTAGCCCTTCCTCAAGGAGGTTATATATAAACTATGGATAAATTCATTTATCCCGCAATTTTTGAGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16300-15933 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSE01000087.1 Paenibacillus massiliensis T7 S7_contig00220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 16299 31 96.9 37 -............................... AGTATATAGGGTCATAACCATATAAACAGCAATCGAA 16231 32 100.0 33 ................................ CGCACTAGGCGAGAGAATGAGACAACCCCCGAG 16166 32 100.0 35 ................................ AAGCAAATATTGGATTGCTATATGTCACATTCTAA 16099 32 100.0 35 ................................ ACCGCCTCCTGTATTGGACATGCACCGGACAGATT 16032 32 96.9 36 ...................T............ TATAAGAAGCCTCAGCCCTCTGGCGTGGTGTGGCAG 15964 31 84.4 0 .C...........C.G..A........-.... | A [15946] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 96.4 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : | # Right flank : AGCTAAAGAGGACCTCCAGCGTAAAAGTGTAGTCGATCCACGGTCCATACTCATTTCCAAGGAACTAAAAGATTCTCCTCAACTTACCATGTAAGTTGAGGGGGATTTTTTTTCTCTATGTACGCTCTATCCAAGGGAGAAAATCCAGAAATAATCGCGAGCATCAAAAATTGAGTCTTTTGGCGTGGTTTAAAAGTGTGTGTTAAGTGTTTATTATCCAAAAAAACAAAAAAAGAAGAAAATTGTAGGTTTTTAGCAGGTATTTTAGATAGGTATATAGAATTATATAGTGCATTATTCGTGCAAATCAATTTTCATATTTTCAGTCATTGGAACTATTTAGAGGTTGGAGTTGATTTGGTGAAATATATTGCTCATATCCGAAAAAGCGATCTTGAGAATCAGTGGGTCGAAGAGCATTTGATTGGCGTGAAGAAGCTTGCTGAGACATTTGGGAATAAGCTCAATATCAGTCATATTACCGGGCTGGCTGGTCTGCT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //