Array 1 4006630-4006242 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJFP02000002.1 Hafnia alvei strain FDAARGOS_350 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4006629 28 100.0 32 ............................ GGTACGCTGGCAATGATTGTGCATGCGCCGCT 4006569 28 100.0 32 ............................ GTACGTGCTGGATACCCGCATTATGTCTGGCA 4006509 28 100.0 32 ............................ ACGCGGGCAATGTTGGGAAACAGCTGCATCCA 4006449 28 100.0 32 ............................ GGTGCCACGGATCGTTGCTGCGATTTCGTCGC 4006389 28 100.0 32 ............................ ATGTCATCCATGAATGCCGCGGCTCGCGCCAC 4006329 28 100.0 32 ............................ ACACTTCCTCGCTCAAGCTGACAAGGCTGGTA 4006269 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGATTGAGTCATTTTAAACCTCGAGAGTGACTTAATTAATGACTACCACTGAGACGCTAAACTCGGGTGGCAGCTCAGATAGGGTTAGCGTCACCGACACTCTCGAAATCAGTGCTTCTTGCGAAGCCCCTGCCTGAGCCACCATTGTTCGGGTGAGTCTAAGCGCACTCCATTATGGCATAGTGCTGTCGAGAGATGTATTGCGGAACGCTAATTCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTTGTAATTTCAACAATGAAACGGGCTGGATGCATTTACAGTGAGTTACTGTTAGATATGGAATCAACTTCTCGGAAATGAGGGGGTAAAATGCAAAAAACTTTATTTTCCAGCCAACCCTTTTTTTTTCGCCTACCTATAACTCATTGATTTTATATAAGTGTTCATCTGGAACATAAAAAAGGGTTATGCAGTGAGAAATGAGTTACGGATCTGATTATTCGAAGCTTTATGCGAATATTCTACA # Right flank : AGTGCCAATAAGTAGTTGAAATATGCTCAACCTCTATTTCTAGATTATTTATATATAAAAGGAATTTATATGTCTTGGAATAAATATGCAGCTGTTGCCTATGTTAAAAACCACGCGCATGCACATAGTACCGGTTATTGTGCTAGGGCTGTTGCCAAAGCTATCGAGGCAGGAGGTGTTTCAATAGTTTCTGCAGATGCAAATAATTTTGAACGTTCGCTTCGTGGGGCTGGATTTAGGGAGGCAAATGGCCAGCCGGAACCTGGTGATGTCGCAGTCATCGAGCCAATACCAGGACATCCGCACGGGCATGTTTGCATCTATGATGGTCAAGATGGTTGGTATTCCGATTTTATGCAGCATGGCATGTATCCTGGGGGAGCTTATCGGAAATTAAAACCTCAGTTTAAAATTTATAGGCATTATTGATTATGAATAATTTATTGATATTACTATTTTTTATTTCTTCACCTGCCTTTGCTGTCAGCGATATTAACAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4067856-4066867 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJFP02000002.1 Hafnia alvei strain FDAARGOS_350 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4067855 28 96.4 32 ............G............... GTGATGGCGGTAGCTTTGACGTAAAGGGAAAC 4067795 28 96.4 32 ............G............... GTCGCGGGGATTAGTACGGCCTAGCGCCGTAT 4067735 28 96.4 32 ............G............... GTCACCAATTAACGGTTTAAAACCACGATACA 4067675 28 96.4 32 ............G............... AATGCCCTGCACTTCTTGAGCGTGAAGTCGTT 4067615 28 96.4 32 ............G............... TAAAATCTATCAATATTGATACGGGAATGGTG 4067555 28 96.4 32 ............G............... ATCGATCCAGCCCTCATCTTCGTAACGTCGAT 4067495 28 96.4 32 ............G............... ACTATACGAGCGCCAAATTTCACCTACTGTGT 4067435 28 96.4 32 ............G............... TTCTTTATATTCTACATATTCTATAGCTTGTT 4067375 28 100.0 32 ............................ CAAGTCTCCTGAAATGCTCGAGGAGATATGGC 4067315 28 100.0 32 ............................ AGTGAAGGAATAATACGGTTTTTGGTGTAGCG 4067255 28 100.0 32 ............................ GTAGCAAGAGCGCCTAATAACTATGGTGTTGT 4067195 28 100.0 32 ............................ CGAGTTAATAGCTTGGGGCTTTTTGCATTCAA 4067135 28 100.0 33 ............................ GTGGCTTGGTTTAACTGCTGAGCAATTAGCCGA 4067074 28 100.0 32 ............................ GGTCTTCAAACTCGTCACCAAAGTATTCTCTT 4067014 28 100.0 32 ............................ AGTTTTGTGCAGCATCAACGACCAACTGACAG 4066954 28 100.0 32 ............................ GTGTTGCGGCACACGCTGTGCCAGTTCGCGAT 4066894 28 75.0 0 ...........C........TCC.A.TC | ========== ====== ====== ====== ============================ ================================= ================== 17 28 96.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTAACTTTCACCGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCAATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCTGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTTTGGAAGCGAGAAGCCACAGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGCGACCAACAAGCGGCAAAACGCTGGTAAATCCTTTCAACCCTTTTTTCTGCCCTCACGCTAACTCATTGATTTTTCATTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : ATCTTCTGTCCCATTTTCACTATACTTATTTCAGCACTGCACCATTGTTGCAGTATTTGAATTAACTTTTGCAGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGATTGAAGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGTGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACTTACGAACGGTTGCGCTTTTGCCTGATACCACTGACTTTAGGCGTCCGATTACCGATTGATTATGGACGTGGTTGTCATTTTATCTGTTTTAATTTGGATATAACTTTTTGTTAAGAACTTTAACGATACAAAAACTGCTCATTGGCACCTTGTACCCGAGTTATTTTCCAACCGTCCTGCCAGACTAGCCACAGAATGAGATGTTGCTGGAT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4072303-4071735 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJFP02000002.1 Hafnia alvei strain FDAARGOS_350 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4072302 28 100.0 32 ............................ AACATATCGCCCCACCATGTAACCACTCTGTG 4072242 28 100.0 32 ............................ GTAATACGCTCCCAGAAGAATGACAGCGCCAC 4072182 28 100.0 32 ............................ ACATAAAGCGCTTGCAGCTTTGTTTTTTGATA 4072122 28 100.0 32 ............................ AGAAGGTAAATTAACGATCAGACGGTCACCGC 4072062 28 100.0 32 ............................ GTCACGCGGTTATCACTACGCTGTCATTGAAA 4072002 28 100.0 32 ............................ ATGAAAAATGGTCAACGCTTCTGACGTCGGAA 4071942 28 100.0 32 ............................ TCCATATTTGGGATACCGTGTAGCCACTTCTG 4071882 28 100.0 32 ............................ TTACTGAGCTTACCCTTGCGTCATAAATGTAT 4071822 28 100.0 32 ............................ TTTTATGTATGCGAACATCACACTGCCAATCA 4071762 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGATTAAGGTAATGCGTTATGGTGAAAAAAAGCCCCGAGCGGGCGTTGGGCTGCTCAGGGCTGATGTATTGTAGATAATAGCAAATTAACCATGCGTAGCAGATCTCATGCTTTTAACATCAGATCTCCAAGGTTATGGCCAGCTAACTCACCGTTACCGTTAAAACGATATTCAAACATGGCAGAAGCCCGTTTGCGTTGGGGTGACTAGCGCACATCGCAGCATGGCCTTCGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAGCGAGAAGTCGCAGAGCAAGGCGATCGCTGGGTTGATGCCCACAACAGCAACCACCAAGCGGCAAAACGCTGGTAACCCCTTTTAACCCTTTTTTTGCCTTCATGCTAACTCATTGATTTTTAGTCCCTCTAATGAGCCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCCACCGATCTGATTAATAAAACCTTTCCGCGAATATCCTACA # Right flank : GCTGTTGAAATTAATGTTGAGCCTTATGTTCGTTGGGCTAAGGTTTGTGCTATCAGCTACTTGGTTGAAAATACGTGGATTGACGGTGATTTAGAGGCTTTTGACGTACGAGATCACAACGAATTCATTGATAAAGAGCTTATTAGCCGCTTATCACGTGGTGTAGTAACAAGTATCAGAGTTTTATAATACTTTTTAGGGCTCTCTGCTGGGAGCCCCTTGAAACTCATGATGTTCTAGCTCAACTGCTGCAATGCCTTCTCAATAGCCATGCGCAGCAGATCGCGGTCGTGGCGGTAGGGAATATCGCTGGCTTCCAGCGTTTCCTGCACCACCACGCGGTTTTCCATTCCTTGGATGTTGACCTTTGGTCCCACGACAACGCCGTCGATAGCATGCCCACCGATGGCTTCTTCCATGATGCGCAGTTTATCGGGCAGGGTTAATGCCGCAGCCGCGACGCTCAGCTCTTTTCCTAGATTACCGATGTAAATCATATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //