Array 1 1023495-1021209 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDC01000015.1 Klebsiella pneumoniae strain K242 K242_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1023494 28 100.0 33 ............................ TCAGTTACTGTTGCTGCTCCAGTAATTTCTCCA 1023433 28 100.0 33 ............................ TCAGATATGCATGCAACGATCACATCGTACAGC 1023372 28 100.0 34 ............................ TTATTATTGTTGACATCAATCCAGTAATCACCGG 1023310 28 100.0 33 ............................ TGATGTTTTCCCACTCATCCTCTTCAAGGCCAC 1023249 28 100.0 33 ............................ TGCCCGCTGCTACACCTGCGCCGCCGACCAGTT 1023188 28 100.0 33 ............................ TACCTACGCAAAGGCTCTCAGGTGTATGTAGAA 1023127 28 100.0 33 ............................ CATTGGTAAGACCGTGGCAATCAGCCGCATTGC 1023066 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAACGCTGGTGGGCG 1023005 28 100.0 33 ............................ TTTATCCTTAAAAGTTTTCGATGTTCTGTTGAG 1022944 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 1022883 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 1022822 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 1022761 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 1022700 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 1022639 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 1022578 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 1022517 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 1022456 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 1022395 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 1022334 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 1022273 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 1022212 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 1022151 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 1022090 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 1022029 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 1021968 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 1021907 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 1021846 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 1021785 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 1021724 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 1021663 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 1021602 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 1021541 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 1021480 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 1021419 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 1021358 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 1021297 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 1021236 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 38 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1033253-1032248 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDC01000015.1 Klebsiella pneumoniae strain K242 K242_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1033252 28 100.0 33 ............................ TCTATGATGAAGAGCGCCTGTTTGCTGAACTCA 1033191 28 100.0 33 ............................ TCTAAGGATGGCTCGCACCAGTTTGGCGAGTAC 1033130 28 100.0 33 ............................ TGCAACTATCAACGGGATGCTCCTTGATGTATG 1033069 28 100.0 33 ............................ TATGCTGAAGCCCTGATGATAAGCGACCGCCTT 1033008 28 100.0 33 ............................ TATCATCAAGGCCGAGACTCAGGCTGATGTATG 1032947 28 100.0 33 ............................ CCTATCATGCGCTTGTTGCTGCATCTTCTGAGC 1032886 28 100.0 33 ............................ TGAATTAGTGTATAAAGCAAGGCGTGACTTTAT 1032825 28 100.0 33 ............................ TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 1032764 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 1032703 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 1032642 28 96.4 33 .............G.............. CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 1032581 28 96.4 33 .............G.............. TATCGTGCAGAGTCACAACCTGACGGGATTATC 1032520 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 1032459 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 1032398 28 96.4 33 .............G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [1032389] 1032336 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 1032275 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.3 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //