Array 1 201500-202992 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVI01000006.1 Escherichia coli strain VREC0423, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201500 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 201561 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 201622 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201683 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201744 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201805 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201866 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 201927 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 201988 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 202049 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 202110 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 202171 29 100.0 32 ............................. AAAATTCTGTGTTCCGACCATTACTTCGGTAA 202232 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 202293 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 202354 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 202415 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 202476 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 202537 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 202598 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 202659 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 202720 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 202781 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 202842 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 202903 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 202964 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTAAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218509-219270 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVI01000006.1 Escherichia coli strain VREC0423, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218509 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 218570 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 218631 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 218692 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 218753 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 218814 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 218875 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 218936 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 218997 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 219059 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 219120 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 219181 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 219242 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //