Array 1 361-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFD01000032.1 Fusobacterium necrophorum subsp. funduliforme strain F1353 NODE_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 360 30 100.0 35 .............................. GCAACTCCTCTAACATCGCCCCTAATTTCACACGA 295 30 100.0 35 .............................. GAAAAATGGCTTATTTGCAATATAGAAGCATATTT 230 30 100.0 37 .............................. TATGGAATAACAGTGATCCGTTTTTAATTAATGATAC 163 30 100.0 37 .............................. GCAGACCAAGCAACTGAAAAAATTGGTTTTTTTACAG 96 30 100.0 36 .............................. ATTTCTTCTGATAATTCTTTCATAACATCAATTTTT 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 295445-296604 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFD01000022.1 Fusobacterium necrophorum subsp. funduliforme strain F1353 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 295445 30 100.0 38 .............................. TTCCTTCGTGTCCGATGTTTGTATTTCGTCTTGAAGTT 295513 30 100.0 36 .............................. TGATTTTTTGCTTGCAATCTAAAAAAATATTGTATA 295579 30 100.0 37 .............................. GTCAAAAGAGAGAATAAGAAAGAAAAGAAGAAGCTAT 295646 30 100.0 37 .............................. AACTTTGAAACGGTTTTGAGTTCAATTTCTGAAAAAG 295713 30 100.0 35 .............................. AATGTAAAAAAAGATTTTTACAAGCACGAGTATAG 295778 30 100.0 37 .............................. TTTTCCCTCCTAGATGTTTCTTTTCATTTTTTCAAAA 295845 30 100.0 36 .............................. TTGCATCTGTCGAGGCGGCTAGAATTATGAAGCGTT 295911 30 100.0 35 .............................. TCACATTCACAGTCGCTTGATTGACTGCTGTGGGC 295976 30 100.0 36 .............................. TTTTTTCCCTCTCTTGCAGCCATTCTTTGATTAGAA 296042 30 100.0 38 .............................. AACGTCCAAAGGCTTTCAAGCGTAGGACTTCTAAACAA 296110 30 100.0 37 .............................. GAAGCAAGGAGACATACATAGACAAAGAAAAATATTT 296177 30 100.0 36 .............................. CTCAATAAATTGTCATAAGCTTTCTTATACAAAGCC 296243 30 100.0 35 .............................. CCAAACAGCCTTTCTATTAAGGCTATCCAATTTCA 296308 30 100.0 37 .............................. GAAAGGATTGAACCTTGAAAAACTGCCTAACTCTTTG 296375 30 100.0 36 .............................. TTTAAACTTCCAAACTTCTCTCCCTCATTTAACAAA 296441 30 96.7 36 ...............A.............. TTTAACATCCCAATACTTCTTCCGCCGTCTTGTAGA 296507 30 96.7 37 ........................A..... TTTCTTACTATCTGGAAACATGCTATTTTTTCAACAA 296574 30 73.3 0 ..C........TT....A.TT...TA.... | T [296596] ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.2 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTCTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TTTGAACTATAACTAAAAAAGAGGTAAAAATGTTATGTTGGATTAAAAATTTGCAATATATGGGTTCATTATTGAAGATTGTTTGAGAGTTTCTTTTGAATTAAAAAAAGGGAGCTTTCATTGTAAGAGAATACGTAAGGATATGGTACACATAATCAGGTTACTGGAACTTCGTCCGACGACATCACCGTGATGTTGACAACTTTAGATTCCTTAAAACAAAGTGAAAGAGAAATTAATATGGAAGATATGAAAAAAAGATTTAGTAATTGTACAAATGACGAGATTGACAAGAGTTCAGAAATTACACATGTTCACTCTATTTCAAAAGAAGCTTGCAGAATTTATGTGGAAATAGTGAAAAGTCTGATTATAAATAAAAATTTAAAAGACATCTTAGAGAATTTGGAATGTACAAAAAATTTTCAAGATTAAAACATCTCGATACTTTGTAGGAAGAGCAATATATTATGAACGCTTTAGGAGGTAGTTTGTGATGT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //