Array 1 227849-228596 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITC01000040.1 Hafnia paralvei strain PCM_1192 930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 227849 28 96.4 32 ...C........................ ATTATAAGTTATTACCCCCGCACTATTAGTTA 227909 28 96.4 32 ....................T....... CAAACGTGGCATGGCTGGCGGCAGCGGCATTC 227969 28 100.0 32 ............................ CCCGATTGAGTGATAGCACTGTAGGTATAGAC 228029 28 100.0 32 ............................ CTAGCCAGTCATGATTATATCATGCTCTATTG 228089 28 100.0 32 ............................ AGCACCGGTCCGCATTAGTTTATTGGGCATCA 228149 28 100.0 32 ............................ GGTGTCAGGTCGAACGCAAACACCTTCGTATA 228209 28 100.0 32 ............................ ACAAGTAAAAGGAGACAGACTGACATGGGGCT 228269 28 100.0 32 ............................ TTAGAATGAGGCCAAATGTCGCCGTTAGTCTT 228329 28 92.9 32 ...C.......C................ GCTGACGGTGGTGCCACAGGCGCTAGCTCAGC 228389 28 92.9 32 ...C......C................. AGTTGCGCCGGGGCAGGCTATTGTGACGCCGA 228449 28 96.4 32 ...C........................ GAAACCAGAATGAAGGTATTCCCACTGAATGC 228509 28 96.4 32 ...C........................ AATACAAGCACTAACAACCGCGTTAACTGATC 228569 28 96.4 0 ...C........................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTGGTGCAGTGGTAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGCTCAATGTTCTTATGCATTTTCGCCGCAATGATGTTGTTCCTGTACGCTTCTAGACCTTCCAAGAGTAGCCGCGTAGAGCCTGTCTGAGCGTGACCGCTCGTCTCCCCGTCGCTGAAAGAGGCGGGGAGGCCGACGACTGGGCGTTCGGAGATATCTGCGGCAACCGTGTGTTGACCATATCACACAGCTTTAGCATCAGATACGCAGATGCTTTCAGCCACGCACTCACCTGATCCAAACTCTCCTGCGGGATTTGAACCCCATTCTCCAGTGATTCACTTAGAAATGAAAATCCGTGGCGCAAAACCCTTTTTTCCTACCCACACGTAACGTATTGATTTTATGTGTGGTGCCGAGCCAGAAATAAAAAAGGTCTTTTAACCAAAAATGAGTTACCGCTCTGATTAGTCAAACCTTTTTGCTATTATTCTACA # Right flank : AATATAATCGTGCTAACTATTTTCAGTTTTTGGCATGGATTTTCATTTTTTTAACAGAACATCTAACTTAACTAGGTAAAATCCATTGTGAAAAGAAAAAACATTAAAGTTATTTAGCATTCGTTGTGCTTTTTATTTTCTATCAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACGAAAATGGTTGTGGTAATAAAGATAAAAGTATACATATAACCCCAATAACCGATCTCCCTCCATCGTGGTACTTCTAGAGTGAAAAAATGGAGTAGCGCCAACAAGATCGTGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAAT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 237023-237889 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITC01000040.1 Hafnia paralvei strain PCM_1192 930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 237023 28 100.0 32 ............................ TGTTATTGGTACTGTCATTTCTAAAGAGTTAT 237083 28 100.0 32 ............................ GAAATCACCTCATGAGATTGCAGATGTTCAGG 237143 28 100.0 32 ............................ GCAGGCGGAAAACGAAAAGGAGTGAAAATGTC 237203 28 100.0 32 ............................ ATGAAAAAGCAATCTATAGGTTCTTTTTAATA 237263 28 100.0 32 ............................ AAGACAAGCCCGAACAAACAAAACCCGCCATT 237323 28 100.0 32 ............................ GGTTACCCCCATGTCATCCATAAAGGCCGCTG 237383 28 100.0 32 ............................ TACTAATGATCCGACTAAAGATTATTGTAGTA 237443 28 100.0 32 ............................ ACTTAGTTGCGGAGCGTTTCGGCGAATGGACT 237503 28 100.0 32 ............................ AGCAAGCGCAACTGTGAAAGGCGTGTGATTGT 237563 28 100.0 32 ............................ AGAAGCAAGAAATATGTTCAGAAGTCTCATGG 237623 28 100.0 32 ............................ ATCACGATTGCCGCAGGCGGGACCTATAAGAT 237683 28 100.0 32 ............................ TTAAGGTCGGCCTGTGCCTTACTGATCGTCTG 237743 28 96.4 32 ............G............... ATTGCGATCAAGTCATCGAGCGGTGCCATTTT 237803 28 96.4 32 ............G............... TGAACAGTTGAGTAAGCGTGAGAGGTATACGG 237863 27 92.9 0 ............G...........-... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATTCAACGGATCCCTGAGAATGTGATGCATTGCACCGTGAGTCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCACATTCTGGATGCCAACGAGCAGCGCACCTCACTGCCCTTTATTTCGTTGAAAAGCCTGTCCACTGGACAAATGTTTCCGCTGTTTATCCGCCAAGGGAAAGCGCAGTCTCATCCTCAGACGGGAACCTTCAGTAGCTACGGCTTAAGCTCAACCGCCACTGTACCGTGGTTTTAGTTTTGTTGGTTTTCAGCGCCCGCCTGAAACTAGACGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTCAATCATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAACAGGCTATTGTTTTGATTTATAAAACCTTTCTCCAGTTATTCTACA # Right flank : ACGGGTTTGTCGTTTAGGCTACGAACTCACGGCCGTTCTTTTGCCGCATTCGCAATGATTTAGCCTATCTCAGTCAGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGTTGGATTTGCAAAAACTTCAGCGCAGTTTCCGTGCTCAATCACTTTTCCGTTTCGCATCACCATCACCTGATGGCACAGTGACCGCACTACCTGCAAGTCATGGCTGATGAACAGGTAGCTGAGTTGGTGGCGTTGCTGAAGCGTTTTCAGCAGCGTTAAAATCTGCGCCTGCACGGAGCGATCGAGCGAAGAGGTCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAATGCGCGGGCAATCGCAATACGCTGACGCTGACCGCCGGAAAACTCGGTGGGATAGCGATAACGAGTTTCTGGATCGAGCCCAACTTCGTTCATGGCACTGATTACCCGCTCTTCCCGTTGCTGTTCGCTCAGCTTTTGGTGTACCTGCAAGCCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //