Array 1 217405-217924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059102.1 Flavobacterium psychrophilum strain FPS-S10 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 217405 37 100.0 32 ..................................... ACTGAAAAAAGCACCATTTTCAATATCAGTCA 217474 37 97.3 32 .......................A............. ASCTGAAAAAACACCCCTTCTAATAGTAGTTA 217543 37 94.6 32 ..................T....A............. GCCTCCAAAAGACCCTTCTCCGATAGTAGTCA 217612 37 100.0 32 ..................................... CTCTGCAAAAGACCCATCTCCAATAGTAGTCA 217681 37 100.0 32 ..................................... ACTGACAAAAGCACTATTTTCAATATCAGTCA 217750 37 100.0 32 ..................................... ATCTGCAAAAGCCTCATCTCCAATAGTAGTCA 217819 37 97.3 32 .......................A............. GCCTACAAAAGCATACCTTCCAATAGAAGTTG 217888 37 81.1 0 .............A.....C.........TT.TTG.. | ========== ====== ====== ====== ===================================== ================================ ================== 8 37 96.3 32 CAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GCCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAWTTATTGTATAATGATTGTTTTTGTTGCCTTACCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAAGAGACAGTTCTAAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTSTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGTCTGCAAAAGCATCCTTTCCAATAGCAGTCA # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAATATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAAYACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 227257-227836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059102.1 Flavobacterium psychrophilum strain FPS-S10 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =========================================== ================== 227257 27 100.0 42 ........................... GTTAAACCAGAACACTCTGTAAAAGCATTCTCTCGAATAGTA 227326 27 100.0 42 ........................... GTTAAACYAGAACAACCGCCAAAAGCACCTCGATTAATAGTA 227395 27 96.3 43 A.......................... GTTAAACCAGRACAATCTGCAAAAACCTGTCTCTCCAATAGTA 227465 27 100.0 42 ........................... ATTAAACCAGAACAAGCTGAAAAAACACCCCTTCTAATAGTA 227534 27 92.6 42 ..T...................T.... ATTAANNNNNNNNNNNNNNNNNNNNNATCATTTTGAATTTTG 227603 27 96.3 42 .................G......... GTTAAACCAGAACAATTGAAAAAAGCCTCATCTCCAATAGAG 227672 27 96.3 42 .................G......... ATTAAACCAGTACAACCTGAAAAAGCCTCATCTCCAATAGAG 227741 27 88.9 42 ..............G..G.....G... GTTAAATCAGGACAATCGGAAAAAGTATAATTTCCAATAGTA 227810 27 88.9 0 ........G.....G..G......... | ========== ====== ====== ====== =========================== =========================================== ================== 9 27 95.5 42 GTCACAGAATTAGGAATTGTAACTGAT # Left flank : GTTAGCCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTGATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTGTTTCTAAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTTCAAAAGCATCCTCTCCAATAGCA # Right flank : TGTTAAATTATTGCAATGCATAAAAGCACCCCTTGTAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAATATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAAYACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGAT # Alternate repeat : GTCACAGAATTAGGAATGGTAACTGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1327119-1325633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059102.1 Flavobacterium psychrophilum strain FPS-S10 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1327118 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [1327114] 1327042 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 1326966 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 1326890 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 1326814 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 1326738 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 1326662 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 1326586 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1326511 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1326435 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1326359 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1326283 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1326207 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1326132 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1326056 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1325980 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1325905 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1325829 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1325754 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1325678 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 20 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTTGCGTGGTACATCAAATTAGAAACGCTTGTAGATATGTGGTATGGAAAGACAAAAAACAATTTACAACCGATATGAAACTTGTTTATACAGCACCAACAAAACAAGCTGCCGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAA # Right flank : AAGCAAAATAAAATAAAAGWAWTATATTATGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //