Array 1 18787-17759 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFI01000034.1 Absiella sp. AM09-50 AM09-50.Scaf34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 18786 33 100.0 34 ................................. AAGATTAAGTATATGGGTATGCACCAGGAGAGAG 18719 33 100.0 33 ................................. TCATCTGTAAGATATCTTATAAAGCTGTCTTGC 18653 33 97.0 34 ................................C CAATTTGATGTGCTATTGCGCAACTTTAAAGAAC 18586 33 97.0 34 ................................T CAAAAATCAATAGATCTCCATCGTTTATATTTGC 18519 33 100.0 32 ................................. CATCAAATTTTAGATTTATGGAACTTTTAGCA 18454 33 97.0 33 ................................T TAGATGTAAATGATGTACATAATTTGTTGATTG 18388 33 97.0 33 ................................G CGGAGCAACTTAACAAAATGTTTGTTGTTTCCG 18322 33 100.0 32 ................................. GCCTGTTCATTTCGCACCTCTTTTCTGTCGCC 18257 33 97.0 33 ................................T CGCATAAGCGCTTATCAAAACTACCCGCCTACC 18191 33 97.0 34 ................................T AAATGCGTCCATATAATCGTTAAATTTTTTCTTT 18124 33 100.0 34 ................................. TCGATCCCACACGCATCATAAGCAGTTTCTATAG 18057 33 97.0 36 ................................C CCTCACTTTCGTTTTCAAATTGATCAAAAACACCGT 17988 33 97.0 33 ................................G TAGCTATCTGATTTTGATGCTACGAGATCTGTT 17922 33 100.0 33 ................................. TTGAAGATCTACGTGATACGATGGTTGATATGA 17856 33 90.9 34 ..........G.........A...........G ATGCAGATGTCAAAGTAACGATCCATGCAAACAG 17789 31 81.8 0 ..................A.A.--.....G.C. | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 96.8 34 GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Left flank : ATACGCGGTGATTTGGATGAGTATCCACCTTTTTTAGCAAGGTGATTTTATATGCTGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACCAGATTAAGAAAAGTAGCAAAAGAATGTATGAATTATGGGCATAGAGTGCAAAATTCTGTTTTTGAATGTTATATGGATAATGCAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATCATGATAGTTTAAGATTTTATTATTTAGGTAATCGATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGATGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGAATAATATGTAACATATTGAAAATAGTAATGTTAATTTAAAAAAATATTGTTTGAAAATTCGTTACATTAGTTTGAATTCGATACATTTTTGTT # Right flank : TCTAACAACGCCCGCTTATTTTGGCGATATGCTCGACTTTTTTCAGAACACCAATTTAAACACTGTACAAACTAATGAATTTATATCACATTTTTATAAACAATTTTATAAACGGCAGATAATACAAAATACTATGTCTAATGTCTTTATAATTGTGTATAATATATTCGTTTGATTATGAGGTGAAAATAAATATGTACAAACAATATAGAGAAGGCTGGCTAGAAGTAATATCTGGATGCATGTTCGCAGGAAAAACTGAAGAATTAATTCGTCGTATTAAAGTATTAGAGTATGCAAAAAAGAAAATAGCTGTCTTTAAACCAAAAATAGATAATCGATACAGTGAAGAAAATATTGTATCGCATGCAGGAAGTAGTGTGAAAAGCTTTTCGATTGAAAATGCACATGAAATATTCAATTATATTGATGATTCATATGACGTTATCGCGATAGATGAAGTACAATTTTTTGATGAAGAGATTGTTGAAATTTGTGAC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29113-28092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFI01000035.1 Absiella sp. AM09-50 AM09-50.Scaf35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 29112 32 75.0 35 .AAC...A.T.T......C.A........... ATGGACATCCAACAATAAAACCACAAGCCATTATA 29045 32 96.9 35 .......................T........ GAACAAATAATATCACTTTCATATAGTTTTCCATT 28978 32 96.9 34 .......................T........ TGATTTACAGCCATTCTTTGATAAAGCAATAGAA 28912 32 100.0 34 ................................ TGTTTTTTTTGATGTTCAGCATTTCCATTTTTTC 28846 32 100.0 33 ................................ GGTGTAAGAACTGTATTAAAAGATCTAGGACGA 28781 32 100.0 35 ................................ CAACTAGAGTTGTAGATTTTGATAAAGCAACAAAA 28714 32 100.0 35 ................................ TTTTATTACTGATCACACGTAAAGGTGGAAAAACA 28647 32 100.0 34 ................................ TAAAACTGGATGTCCTTTTGGATATAAGAAAAAT 28581 32 100.0 34 ................................ AAAGAAGTACGAAAATCTGTTATGAAATTAAATT 28515 32 100.0 33 ................................ AAACTAGCAGATGTCTTTGGTGTAACTACTGAT 28450 32 100.0 34 ................................ ATTTTTGCTGTATAATATAAGTGAAGTGAGGTGA 28384 32 100.0 34 ................................ AGGTCAAGGGATTTATGAGAGGAAAAGGCAATAT 28318 32 100.0 33 ................................ ATTGTCTAACATCTTACCAACGTCTGCTCCGTT 28253 32 100.0 33 ................................ TTTCAATACTAAAATTTCGGGTATTTCCATCAA 28188 32 100.0 33 ................................ GGAGATAGTAAGGAAGTTGCACAGGCATTAGAA 28123 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 98.0 34 ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Left flank : CGGTGCTAATGTTTAATTATTTTTAAGACATTTTCATTTTTGCTTGACATGAATTACATATTTAAAATCTGGAAGTTTATACAATATATAAAAATAAAGTCCAGCCACTAAAAAAAGCTAAACTTTATTTTAATTATTATATGCACAAAGCTATCTACAAAAAA # Right flank : CGCAAAAATATTATTTACTTGCTAACTTGTAACAAATTTCCATCAAATGAAATCTCTCTTTCTTTCAATCTGTTACATATCACTGATTAAGACACACAATTTAGCGCGAATCTCCTAGAGAAAACATGGGAGCTTAATATTCGCAAATCTTAAAATCTTGTTTTCCTATGATAATTATCATCGAACATGATAAATATCTGAAATAACTCTTCTGCTGAAAATTCAATTTTCCCTTGATATTTTTCAACAATCTGTTCAATATTTCGGAAACCAAAACCGTGCATATGATGATCCTTTTTATTACTAATTAAACGATCATCCTTTATAATCACTTCATCTTTATCATAAGAATTTGATAAATCAATATAAATAAAATCATCTTTATGTCCAATACTTAAACGGATTAATTTACGCTCACATTTACAAACCGCCTCTAAACTATTATCCAACAAATTTCCAAGCAAAATACATAAATCCATATCATCTAAAATTGCCAGCGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 28026-26967 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFI01000014.1 Absiella sp. AM09-50 AM09-50.Scaf14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 28025 34 100.0 34 .................................. TGGTCATTAAAATTTTCTGTGCCTGATTGTCCAG 27957 34 100.0 35 .................................. ATTTCGTGAGCTGTATACTCGTAAGAAACCATAGC 27888 34 100.0 35 .................................. GAAAACCTCTGCTGACGGAGGAGATGGTGTCCCCG 27819 34 100.0 34 .................................. TGATAGTAGGTGGAAATTATGGTAGCACGGTAGA 27751 34 100.0 35 .................................. ATTTTGACCAATAATGCTAAAACGCCACCAAGTAA 27682 34 100.0 33 .................................. ACACTATGACGGAGACGGCCATAAAAGCCGCCT 27615 34 100.0 35 .................................. AAGAAAGTAAAAATGTCGCTCCCATCCGACCAAGG 27546 34 100.0 36 .................................. TTTTTTAGGTACGATACACACTTGTATATAGTCATG 27476 34 100.0 33 .................................. TTCGAATACGTTTCCCCATTGATTACTATTTAA 27409 34 100.0 34 .................................. AAGTATGGCAAAGAGGTGTTTCAATTGCTGTTAA 27341 34 100.0 35 .................................. TATGATAGACCAACCAAATAATCCAAACTGCCAGC 27272 34 100.0 34 .................................. GATAAGATTAAGATTTTTTTTATACATCTTAAAG 27204 34 97.1 35 ...................A.............. TTTACTTCTAATTGCTTTTGGTTTACAGTTACTTT 27135 34 97.1 33 ...................A.............. TGTTATTCCTGATTTTTTAATAAGATAAAAAGA 27068 34 97.1 34 ...................A.............. CTATTTTAAAAATACCATCTATATATATTGTTTC 27000 34 82.4 0 .................G.A.....A..C...CG | ========== ====== ====== ====== ================================== ==================================== ================== 16 34 98.4 34 GTCATTATGCTATATGCATGATGTGGATTTAAAC # Left flank : AATATAAATATAGTATAGGAACTTATTTTTCATTGCTGGCATATGCAGATGAACCAATTCAGCATGCGTGGTTTCTATCACCAATTGTGAATATGCAGGTTATTGTAGAAAATATGATGGAATAGTTTCATATAGATGAAACACAATTAGAAAACAAGAGATAAACCAATTTAGATATGGTCTATTCGGATATCCTTTATGGAGAAAAGAATGATATGTGTGATTGGTTGTTCACAAATTTCATTGTGATTTACAAGTCATGAAGAATGGAGAGCATTATTTCCAAACATCTCAACAGCTTGCATATCATACTAAATGCTTAAACAATCATCTTATTTAAACGCTTGCGAACCTTAAGCTCACATGATATTCCTAGGACATTCGCGCATGGAGATATCTTATTTTGCACTATATGTATCGAAATGAAAAAAAGATTTAAAATCATGCGTTGAAAAGCAAAAAAAATTGTTTCATTAGCGTATGATTCTAACAATTTTGCG # Right flank : ATTAGCACCGGTGCTAATGAACCATTTGCAACTGTTGTTATACTTTATACGGCAATGATTGAAGCATTGTATCGTTGTAAATGTCTTGAATTTAAACTAAAAAAGATATCACATCCGATTTGGATATGATATCTTCAAAATGTTTAAGCTTTACTATCTGCCAGAACGGTTTTAGTTTCTGGCTTTTCTTCTTCATTGAATAACTTTTTACCTGAACAGAAGGTAATCATTAAGCCTAATGCCACAAGTAGAACAGCGAAGATTAATTGTAAACCATCTGTCATAAATACGAAACCACCATTAACAAATAATTTCAAACAGATATTGTAGATAGATAAACCAAGTGATGTCATAGTACAAATTAACATCAGGGTCATAGGTACATATAACATCCATCCTTTTCTTCCAGTGACTTTTAAGAATACAGATAATGATACAAGAACCATAGCGCCTAATAACTGGTTAGCACTACCGAATAATGGCCAGATATTATTATATCC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATTATGCTATATGCATGATGTGGATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 88248-87747 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFI01000014.1 Absiella sp. AM09-50 AM09-50.Scaf14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 88247 33 100.0 32 ................................. ATTTGATCGATGAAATATCCACTAGTATTTAA 88182 33 97.0 34 ................................C ATCCTCATTGTACTTGTCATACTCATCATTAATC 88115 33 97.0 34 ................................A GTCATGGATAAAAGTCCTCAATGACGATCCTCAA 88048 33 100.0 35 ................................. CAAGAACTTGCTGATCAATTAGTCAAAGATGGTTG 87980 33 97.0 34 ................................A CTTTATGTTCTCCGATTGCATCATTGTTATAGCC 87913 33 97.0 34 ................................A CTGTAACCGGCACGAATGGCTGCCTGTGTGATGT 87846 33 100.0 34 ................................. TCCTTTCTGTGCAAATCACATTTATACCTCTACC 87779 33 84.8 0 ..........T........C..AT........G | ========== ====== ====== ====== ================================= =================================== ================== 8 33 96.6 34 GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Left flank : GATACGTGGTGATTTGGATGAGTATCCTTCCTTCTTAGCGAGGTGATTTTATATGCCGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACGAGACTAAGAAAGTAGCAAAAGAATTTATGAATTATTAGCATAGATTGCGAAATTCTGTTTTTAAATGTTTTATGGGTAACGTAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATTATGACAGTTTAAGATTTTATTATTTAGGTAATCAATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGAAGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGGATGATATGTAACATATTGAAAATAGCGATGTTAATTTTAAAAAATATTGTTTGAAAATTCGTTACATTGGTTTGAATTTAATACATTCTTGCT # Right flank : TACATTATGTGCTGCCTTTTAAAATTCTGTGCGTTTAGATTGATAAGAGTATTACAGTCTTTATCTAATATTTCTGTGAAAAGCAACTCCACTTGACATACTTATGATCTCATCTTCAGAAGAGGCTTTGTAATATATCATTTCTTTGAACGCTTATTGAAAAAAGTACTACTCTATTATAAATTATAAAATTGAGGCATCCTTGTGTATTATAGTTATATCACGCTTGCGTAATATGTTAGGTTTTAAAGCACATGATACTTCATACCAGCTGTAATCCATTCTTTTAAGATAATTAGATTGCTACTAAATTCAATATAAGTGTAAGCATATACCTTTGCATATTCTTTACAATTCATAAAATAACCATATCGCTCGTGAATATATAATAAAGGATTTCTAAGAAGTACTACTCACGCCGACAATAGTTGTCTTAAGCTGTATGGTCACTGTTCCAAGGGAAGGGATCGCCAATATTGTATAAATTAATGTATTACCTA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //