Array 1 48202-50854 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVTK01000006.1 Halomonas songnenensis strain CGMCC 1.12152 Ga0171609_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48202 29 100.0 32 ............................. TCGCTGGTACTCCGCCGGCGTCACCCCCAAAC 48263 29 100.0 32 ............................. CTTCCGGAAGCGGCCCATGAATAGCCAGCCAG 48324 29 100.0 32 ............................. CGTCACGGTCGTTTTGGAACTAATCACGTATC 48385 29 100.0 32 ............................. ATCATGAAACAATATCGGAAATTCGAACGCAC 48446 29 100.0 32 ............................. TGATTTTGAGCGCCATGTTATGCCTCGGTTTG 48507 29 100.0 32 ............................. AGCGTTTTGCTCTGCGTTCTTGCTGAGCCTTG 48568 29 100.0 32 ............................. CATGAAACATAAAGACATGCCCTGGCCATTGC 48629 29 96.6 32 ............................A GATGCCTATAACTGGTCGGTGTCCCGCATCGC 48690 29 100.0 32 ............................. CACGGATAGACGGCCATCCACCTCAACAACCA 48751 29 100.0 32 ............................. ACGGATAACGTTCACCAGCTGCCCCAGACGCC 48812 29 100.0 32 ............................. CACTCCATCTTGAAAAACGAATCCCACACATA 48873 29 100.0 32 ............................. CGATCTTGGATGCGTTGGATGGCATGGATCTG 48934 29 100.0 32 ............................. CCATTAATGGCAGCCTGGTTATTGCCAAGATC 48995 29 100.0 32 ............................. TTTTTTCTTTGCATGAAACTCTCCTTAGATTA 49056 29 100.0 32 ............................. CGCTGGAGTGAGTGCTCATGCTGCCCATACCC 49117 29 100.0 32 ............................. CACTCCATCACGTAGTATTCATCCCAAGCAAA 49178 29 100.0 32 ............................. TCAAGCTCGTCGTGAACAGTCAAGCGCGGCAC 49239 29 100.0 32 ............................. CAGGGCAGCCACAACAAAATAGACGGGGCCGT 49300 29 100.0 32 ............................. TCGGCCATGGCGTCTTCGACGAACTCGGGAAG 49361 29 100.0 32 ............................. GCCGTAAGTACGGCGTAGCTGTGTCAATCTTC 49422 29 100.0 32 ............................. GCTGTAGAAACCCAGCTAATAGCTATTGGAGT 49483 29 100.0 32 ............................. CCGGCAGCGACAGCGGTCTTTCCAACATGGGT 49544 29 100.0 32 ............................. TCGTCCGGGTCGGTGTTGTCGTTGGCGTGCGC 49605 29 100.0 32 ............................. TGCGTAAACGTCGCGATGCCCTAATGCTCCGA 49666 29 100.0 32 ............................. CGCCCATGGTCTTACGTTTTTCATCGCCAGTC 49727 29 100.0 32 ............................. CGCTGGAGTGAGTGCTCATGCTGCCCATACCC 49788 29 100.0 32 ............................. CAGCAGCACGAAGACGAGCTGGCGCGCATTGA 49849 29 100.0 32 ............................. AATTCCTCGAGGTTTTGCGTCGTCAGCGGGAC 49910 29 96.6 32 ............................A GTCGCTTGAGCGCCGAGGCTGGAAACGCCTAG 49971 29 100.0 32 ............................. ACTGAACAGGGTAGCCAGTACGTCATCAACGA 50032 29 100.0 32 ............................. CCATCTATAAGCGCAAAGCGCAGGAAGCAGAA 50093 29 100.0 32 ............................. ACCCGGCCAGTCTGAATTTTTACAATCCTACG 50154 29 100.0 32 ............................. CAGAGCCAGCGCACGCTATACCCCTAATCCAA 50215 29 100.0 32 ............................. CGCTTGGCGTATCTTCGCCATTTCTTCCCGGT 50276 29 96.6 32 ............................T TCACGGGAGGAGGTTAGCCTCATGACCACGAC 50337 29 100.0 33 ............................. CTTGTCTAGCTCTTCATATACCGGATCGGTTTT 50399 29 100.0 32 ............................. CTGATTGAGGTGATCGTCAAGGATCAGCGCTG 50460 29 100.0 32 ............................. CGTGCGGTATCTGTGAGTCTTGCAATGCCGGG 50521 29 100.0 32 ............................. CGGGGGGCGCATGCCCTTGTACTCGATAACGT 50582 29 100.0 32 ............................. TACGTGGTTCACGGCAACGGCACGAAAACGCT 50643 29 100.0 32 ............................. CGCTCAGCGATCTGGCCGCGCAACTGAAGCGC 50704 29 93.1 32 .........G......C............ GTGCTGCGCGCCATCTCCGAAACCATCACCTT 50765 29 100.0 32 ............................. GCTTCGGGTTTTCAAAGGGCAGTGCAAAACTG 50826 29 79.3 0 ...C.....G.C...AC...........A | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.1 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GGGTGGAGCTTCCTGCCGCGGTAGACTGCGTGCGCCTGAACGAGCGCCTGGCCCGGCATAACGTGCATGTCGCCCCCGGCTCGCTGTTTTCCGCCTCCGGCAAGTTTCGCCAGTGTTTACGGCTCAACTACGCGTTTACTCTGACGCCAGCAATCGAAACCGCGGTACGCACGGTGGGGGAGCTGGCTGGCGAGATGGTGGGGGAGTCGCGGGCATCGCTTGTGTGAAAATGTCGGAATCAGCTAATAAGCACGCCTGACGAGCGTTCTGCACGAGTAACCCGCCGTTGGCGAATGCGCATACCATAAGAGAAGCCTCTATTATGAAAACGATGCATACTCATACCTTCGAACGAGGCTTGGTGCAATTTTTACAGGTTTCTGCAACGTTTTGATTTTTATGTTCTTTAATAATATTGTACTGATCAAAAATTGACCTAAATCGCTGGTGGATTTTCTACTGCCTATTTTTATCTTGCAGAACAGTCATCTACAATTAGA # Right flank : AATTTCCCGGGAGCGTTTGCTGACTAATTAAGGCGGTGCACACCGCGGCTGGCGATCAAGCTGATACTCCGATGACCCTCGGCTGATACATCGACGGAATATCCTTTTTAAGACTGTTTTGGGATAAAAATATGCGCCTGGGGTTATCAATATTTGAAAATTTATAACCCTGGAGTTATATTTTATTGATCATGTACGAACAAGGGAAAAGGGTGAAAAGCAAGGATGTAATCAAGGAGATGGAGGCCGATGGGTGGTATCTAGACCGTGTTAGCGGGAGCCACCACGTATTCAAGCACCCTACCAAACCCGGCAGCGTGCCCGTTCCTCATCCGAAAAAGGATTTGCCCAAGGGCACTATCCACAATATCAGGAAACTCGCGGGGCTCAGGTAGCCCGGGCGTTCAGGAGGTAGATCATGCAATATCCGATTGCTATCGAATGGGGCGATGAGCGCACCGCCACCGGTATCGTCATTCCGGATATTCCCGGGGCTGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61406-64117 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVTK01000006.1 Halomonas songnenensis strain CGMCC 1.12152 Ga0171609_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61406 29 100.0 32 ............................. TGGTCGCTGGTCTCGCGTGAGATGTTCGCATG 61467 29 100.0 32 ............................. CAATGATCGGCTTTGGCATAGGCCTGCTGATC 61528 29 100.0 32 ............................. GGATGTTTCGGGCCCCCCCCGCATTCAAGACT 61589 29 100.0 32 ............................. CCCCGTCGCGCTGACGTTGTACGAGCGTCCGC 61650 29 100.0 32 ............................. CGTACGGCAGGCGTTAGTCTAGCTCCTATACG 61711 29 100.0 32 ............................. CTCGATCGCGGCTTGATTAGCGAGTAGTGCAT 61772 29 100.0 32 ............................. CGCGGCACCGGCACATAAAGCGAACCCGCCAT 61833 29 100.0 31 ............................. CGACTGATGCTAATCACGCCGCTTGGCTTGC 61893 29 100.0 32 ............................. TTACGGACTAAACCGCATTAGGGTAACAGCGC 61954 29 100.0 32 ............................. ATACCGGCGTTCAGCACACAGCCAGCTGAACC 62015 29 100.0 32 ............................. TCAGATGCATATGCGCGGCAGGTGTACCAGGT 62076 29 100.0 32 ............................. TTGCCCTCGCTGAGCTGCTTGGGAATGTCCAC 62137 29 100.0 32 ............................. CAGGAAACGATGCCGCGACCCGCTGAAATGCC 62198 29 100.0 32 ............................. CTTTTCGATGATCGCGCCGTTCACGTCGAGGT 62259 29 100.0 32 ............................. GGTTTTGAACGGTTTTGAACGCACTTTGATAT 62320 29 100.0 32 ............................. AGTACGACCGTGTAGTTCTTACAGCCGGATAT 62381 29 100.0 32 ............................. GGCTGGCGTTTGAGCGCCAGCCCTTGAATACC 62442 29 100.0 32 ............................. GATTGGAGTTTGATCATTCGAGGACCTCGATC 62503 29 100.0 32 ............................. CGCGCAGGCCGGTAGGCCGGAGGGAGAGGGAT 62564 29 100.0 32 ............................. TCAGCGCGCAGTTTTCCATCCTGAAATGCCAG 62625 29 100.0 32 ............................. TCATGGTGCTATCCCCCGGCGGCGACCTCGCC 62686 29 100.0 32 ............................. CCACCCAGTCGATGGAGCGCAAGGCCGAGATC 62747 29 100.0 33 ............................. TCGGCGGCGAGCCCTAAACGGTGCGCGCTGGTC 62809 29 100.0 32 ............................. CGCCCCACCCAGGCCGCTTTCAATGAGCTGCA 62870 29 100.0 32 ............................. GGCGGGGGTGTCCATAGCGTCATTAGACGACT 62931 29 100.0 32 ............................. CTTTTGGTGACAGCTTTATGGCCCTTGCGTCG 62992 29 100.0 32 ............................. GCCTGCTGGCCCGCATTGCCGAGCTTGAGGAG 63053 29 100.0 32 ............................. TAATTTCCTACTCTGCTATAGGGTTTGGTCAT 63114 29 100.0 32 ............................. CTGACTGAATCGCGGTGAAGGGCCGGTAATCA 63175 29 100.0 32 ............................. ACGTAGCAGCCCATGTCGCCGCTGATGCACAG 63236 29 100.0 32 ............................. CGTACTCTTTCCGGAAACGGCTTTCTTGGCGG 63297 29 100.0 32 ............................. CTTGAGGTGGTGGCCGTTGGCCGCGGCGACAA 63358 29 100.0 32 ............................. ACCGCGTGCGCGTGCTGCTGGAGGCCATGCCG 63419 29 100.0 32 ............................. TGCTTACGGTTCGCGCCCCTGAGGGCTGGGAC 63480 29 100.0 32 ............................. CCGGTTTGATTGCTCAATCTACTGCCGCGCAA 63541 29 100.0 32 ............................. CCAGGCTGTAGAGTCGGTAATGAGTTCAGATT 63602 29 100.0 32 ............................. GAATGGGGCGCCGAATGGCAGACCACCGACGC 63663 29 100.0 32 ............................. GAAAAGCCTGTCACATGGGAGGCACCCATGCT 63724 29 100.0 32 ............................. ACGTCAACATCGGCTGGCTGCAGTAGTACCGC 63785 29 100.0 32 ............................. CTCAAGCACGTCGACACGCTGACCGACATCCA 63846 29 100.0 32 ............................. TCGCATGGTTGTAGGCTTCGTCGGTGGTTTCA 63907 29 100.0 32 ............................. CCACTAATCAATGCTGTTGGCACTTCAGAAGC 63968 29 100.0 32 ............................. TTGTTGCAGTCGACGAGCGCGATCATACCGAG 64029 29 86.2 30 ................T........G.GA TGCCCAACAGCACCGCCCAAGGCGTGATGA 64088 29 75.9 0 .........A.......TT...C.C.GA. | C [64104] ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.2 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : AGATCGAACCGCCACCACCCCCGGCCGATGCCGTGCCGCCGGCCATCCCCGAGCCAGCATCGATAGGCGATAGCGGCCACAGGAGTCATTAACATGGCCATGCTCGTCGTCGTCACCGAAGCTGTACCGCCGCGCTTGCGTGGGCGGCTCGCCGTCTGGCTACTGGAGATTCGCGCCGGTGTCTATGTGGGAGACGTCAGTAAGCGTATCCGCGAAATGATCTGGGAGCAGATCGAGGTATTGGCCGAGGAGGGCGGCAACGTCGCCATGGCCTGGGCCAGCAATCACGAATCCGGCTTCGAGTTCCAGACCTTCGGCGATAACCGCCGCGTGCCCATTGACCATGACGGACTACGCTTGGTGCGTTTTTTGCCGCCCATGGATAAGTAGCTGTTTTTGATGCTCTTTAATAATATAGAGCTGTTCAAAAAATGATCAAAATCGCCGGTGGATTTTCCGCTGGCGATTTTTCTTTTTGAAAACAAGTGACTACAATTAGA # Right flank : GTTGGTCACGTAGCTGCGTGAACACGCGGTTACCTGAACGCGTGTGAAATGAGAAACGACGGTGCAAGATACAGCCTGGGGATGGCTGCCCAGGCGAAATCGGGGTATCAATGAGGAGCGCTTTCAAGCACGCATTTTCAAGCCGCGGCGAGCAATGAAAACTCGCCGCGCAAACCGCACGAAGGAGGTGGTCATGATGTTACGTTCACTGGGTTGGCTGACGGCCGCCGCCATGGGGTTGTCGATAGGGTTTGCCGCGTATGCCAACACGGAACAGACGGCCGACGAGCAGTCAACACTGCCGGAGGCGGTCGCCGCGCAGATGAGTGGCACCTGCGCGCCCATCGATGAATCGCTGGGTATTGCGCCCCAGCGTTATGCGATCGACGATGACATGGGCGGCGATTTGTGGCTTGTGCCGTGCAACGCTGGTGCCTATCAGACCTCTTATGAGGCAATTTATCAGCCCGATGATGCCGAACCGCGCAAGCTGCTGTTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //