Array 1 105301-104539 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCUW01000005.1 Escherichia coli strain VREC0422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105300 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 105239 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 105178 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 105117 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 105056 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 104995 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 104934 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 104873 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 104812 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 104750 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 104689 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 104628 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 104567 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122310-120817 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCUW01000005.1 Escherichia coli strain VREC0422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122309 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 122248 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 122187 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 122126 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 122065 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 122004 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 121943 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 121882 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 121821 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 121760 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 121699 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 121638 29 100.0 32 ............................. AAAATTCTGTGTTCCGACCATTACTTCGGTAA 121577 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 121516 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 121455 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 121394 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 121333 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 121272 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 121211 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 121150 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 121089 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 121028 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 120967 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 120906 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 120845 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTAAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //