Array 1 28010-29026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRN01000012.1 Hapalosiphon sp. MRB220 contig_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================== ================== 28010 37 100.0 35 ..................................... CGATGCCTTGTAAAAATTGGTTGACTGATTGCTGA 28082 37 100.0 40 ..................................... ACGTCCGATGCAATAGCAGGAGTCACTGAGAAGCCCGCGC 28159 37 100.0 36 ..................................... CTTTATATACGTGTAATTATGTTCCTGAAAAAACAA 28232 37 100.0 34 ..................................... CGTTCGAGTTTAAACCAATGACCAGATGGTCGGA 28303 37 100.0 36 ..................................... AAATGTGGTATCCTTGCGAAAAATCTGCATTGTACA 28376 37 100.0 35 ..................................... CAGCATACCCCGTTGCTGATGCTCCCAAACATTAA 28448 37 100.0 37 ..................................... TACAGATCCTGCACTTGTTCGAGAGTGTGAAGCTAGA 28522 37 100.0 36 ..................................... TTGCGTTTAAGGCAGTGGTTACAACAATTTCTACAA 28595 37 100.0 36 ..................................... ATGTCAGGATGCTCATCAGAAACATCAGCAATACGT 28668 37 100.0 36 ..................................... AATATGCGATTCTTCTTGATGAATTTGCACCTAGTC 28741 37 100.0 37 ..................................... ATTTTGGAATTTGCTCAAGGAGAATATCGTCCTCCAG 28815 37 100.0 37 ..................................... AGTATAAACAAAGAAGGGCGCAACGCCTGGCAGCAAC 28889 37 100.0 62 ..................................... CTACATGCGCTTCTAAATCTTTTAACAGCATTGCGGATTGAAACAGTAGAATCCGGGAAAAT 28988 37 75.7 0 ACG...TT..T...CC...T................. | C,C [28997,29000] ========== ====== ====== ====== ===================================== ============================================================== ================== 14 37 98.3 38 CTTGAAACTTAGCGAATCCCGGAAACGGGATTGAAAC # Left flank : TTATCTCATAATTTACGATTTACCCGATAATAAAGCAGCTAATAAGCGGCGCACTCGTTTACATAAAATGCTTTCTGGTTATGGAACTTGGACACAATATAGCGTGTTTGAATGTTTTTTAACTGCGATAAAATTTACTGAAATGCAAATCAAGATTGAAAATTTAATTAAACCAGAGGAGGATTCAGTTAGGGTTTACGTGCTGGATGCTAGCTCTGTAAAACGAACTATTACTTATGGTTCCCAAAAACCTCGACAAGAACAAGTTATTATTCTATAGTTATGTTATTAGCTTAATGTTTGGCAAACCGAAGCGGGGGCTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTCGACAAATCAATATTTACAGCGCTTTAAAGTTTGCGATAAATGAGAATTTGTTGCAATAAGTGAGGCTGAAATGAGGCCATTTTTGAGGTCTGCCAAAACTGCTTGTAGAATCCTTGCTGTGTAAGGGTTTCAGGGTGCGGA # Right flank : CTTATTTAGAGATCCTCGCCCAATTAAACCAAGCAGTCAACAATCTCGGTTTCAACAACCAAGTTATTTTCTACTCCTTCATCTGATATCTTGCGCCAACCCCATATCCCGCCTCAAAATCAATTGGTGAGGCCAATAGCATAAGTCCGTTAAAACGNNAGTCAGATTTATCTGACTTTCGTTATTGGCCAATAAATAAATTTATTGGCGGGATGAAAAGCTGATGCAAGATATGAGTCATCCTTTCCTGACTCAACAGCAGCATGTTGTTGTGGATCAGAAGCTTTAGGATCTAATCTAATACGATTTCACGTTAATCACGATCTATATAAATTTGTAGAGACGCGCCTGTATTTGTATCAAGGTTTTAGTGAAATGGTATAAGGTGTTGTTATACAGTGAACCTGGAATGTTCATTTTTGCATTTGCGGTGTTCAAGTAGGCGATTGAGTACATCGAAGTGTAATTTATACTGCCGCCTTCTGTCCTGCCCATTACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTAGCGAATCCCGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 48949-46767 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRN01000001.1 Hapalosiphon sp. MRB220 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 48948 37 100.0 37 ..................................... ATTTCAGTGCATCTGAATTGAAAAATTTAAATCAGAT 48874 37 100.0 39 ..................................... TTGGCAATATTATCTTTTATGCCATTAAACATTCCTTCA 48798 37 100.0 38 ..................................... GTAATGCCAACGTAAAACTATCCCCGACGGCGTACCAG 48723 37 100.0 37 ..................................... TCCACACTTAACGTTGTTTCTTCGCCGTCGTTCGTGA 48649 37 100.0 41 ..................................... TAACTTTATCTAATGATTTCTTTTGCCTATGATACTCACGA 48571 37 100.0 36 ..................................... GACAGTTCAAACCTTTCTACATTGAGCAAATACGCA 48498 37 100.0 37 ..................................... ACATTCTCAACAACACATGGGTTCAGGAAGCTAAAAA 48424 37 100.0 37 ..................................... CTTGGTTCGCGATCGCACCATACGTTTGCGCCAAGCA 48350 37 100.0 37 ..................................... AGCGTAGATTAACGAATGCAGACTTCAAAATTATCAG 48276 37 100.0 36 ..................................... CACTATTCTAGCGCCATCAGAACCTTGTTCGCTGCA 48203 37 100.0 33 ..................................... CTTAAGCACAGTGAGCGTGTTTTTCCGATTCGG 48133 37 100.0 36 ..................................... AGGTCATTGACTTATGATTAAGCCTTCAAAAAATGA 48060 37 100.0 41 ..................................... GCGTCTGCTTTAGAGTTTGCTGAGATTGAATTTTCAGAGAA 47982 37 100.0 37 ..................................... CGCTTCAGTCTTCAGCTTTTCAAACGGATAACCAAGA 47908 37 100.0 35 ..................................... ATGGCTTTTACAGCCTTGATTTCTTTCTTATTAGG 47836 37 100.0 34 ..................................... TACTGACCGGGCGCAGGATGGCTGAAGTCCACGG 47765 37 100.0 40 ..................................... AAAGTTTACGGCGACATTTACGATGAGATGAGCGCGGCGA 47688 37 100.0 36 ..................................... GAGTTGTGATTTCGCTATGGCTAGTTTTTCGGTTAA 47615 37 100.0 35 ..................................... AGTCTGAATATTCCGATGGACAAACAAATATAGTT 47543 37 100.0 36 ..................................... TAGCTGCGATCGCTATTCGGCGATATATTGAGCAAG 47470 37 100.0 44 ..................................... TCAAACTCCGGTCATCTACCTTGAGTTGGCACAACAGTTAGCAA 47389 37 100.0 36 ..................................... GAGCTAGTGGTGCAAGCCGCACTCGTCACAGTCCAG 47316 37 100.0 36 ..................................... ACGAGTTGGAGTGGGATGCTAACGACTGGTACTTGG 47243 37 100.0 35 ..................................... TTCAATCGTATCTCTACCCACAACCAAGAGATTGA 47171 37 100.0 37 ..................................... TGGCGACGTTGTTGATTTAGACAAGATTGATTGGACT 47097 37 100.0 36 ..................................... TCTACATCCAGCACGATGCCAAAGACTACATCGCAC 47024 37 100.0 40 ..................................... GTCGCGAAGTAGACAAAGGTAGCCAAGCAGAACCCAAAGC 46947 37 100.0 36 ..................................... AAGCAATCTTTGGCACTGTCAATATTGAAGATGTAA 46874 37 100.0 34 ..................................... CGAACTTTGACGTTTAACTTAACAGTGTCCTTAT 46803 37 97.3 0 ................................T.... | ========== ====== ====== ====== ===================================== ============================================ ================== 30 37 99.9 37 GTTTCTAACTCACAAAACCCCGAAAGGGGATTGAAAC # Left flank : CTAAAGTTCCAGGCTAATAGCTTAAGTCCACTTCATGGACTAAATCGAATTTCTCTATGAGTCCTCTTCAGAGGACTTGCGCTATGAGACTCGGAATTTATTCCGAGGCGTACATATGCGCTCAACCTAGATTTGTGTGTACACCGTAGCTAACGAGGAGAAAACGCTAGAATACTAAAGATATTGCTGTTGATCGCCTTGCCCTTTCCACAACAGTTCCCCTCAAGAGGTGCGGGTGTGACAATCAGTCAAAATCTTGACAATAACATCAAGCTAGTATTACCCTGAGTGTATGAGATTTTTGGCGTGTCTAAGCGAGGTCAAAAACCCTGGAGATCTGCCAAAATCCCCAGAACCTAGACAAGTTAATAATTACAGCGTTTTCAATATCTGGGAAGTTGCAATTTACTTGCAATAAGATGGGCTGAAATAGACTTAATTTTGAGACCTGCCAAAATCGTTCCCAGAGTGCTTACTCTGCAACAGTTTCAGTATGGCAG # Right flank : ACTGACCCGTCTCGCAAGCAAGTGTTGCTAATCTTAGATTTTGCACTTACCCCACATTCCGCCTGAGAATTAATTCTCAGGCTAATAGCACAAGTCCGTTTCAACGGACTCAAAGGCTTTCCTAGTCAAGTTTATCTGACTTTGGCTATTGGGAGCATCCCAATTTTTTCAAGATACCGTAAAGCAAAGGGTTTAAACCCTTTGCTAATAGCGCAAGTCGTCTTCAGACTACTTTCACTATGAGACTGAATCGCAGGCGTTTTTTGAATATTTGGGATGCTCCCTGGTTATTAGCCTTTGAAATTTATTTCTTGGCGGGACGGAAAGTTGGTGCAAGATATGAATCATCCTCAAAACACCGAAAGGGGACGAAACATCACCGAATGGTGCGTTGCGCTGCGCGACAACACACCCTACAAAACTGGCGAAGCGCATTCCGAGTAGTCAGGAGACTTAGACAGAGAATTTTCAAGGCGACCAAAATAAATTATGCGATCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAACTCACAAAACCCCGAAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 10544-12235 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRN01000029.1 Hapalosiphon sp. MRB220 contig_138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 10544 36 100.0 35 .................................... AAACTCTGCTGCAACGCTACAACATAACAGTAGCG 10615 36 100.0 36 .................................... GTCAAAGTACGCGGATTAGCCTATCCTCTTCAAGTC 10687 36 100.0 36 .................................... ACAAGCAGGTGGTAGTAGGAACCAATACCAAGTATG 10759 36 100.0 34 .................................... TAATTGACATTTGTTTGCTCGACCCCGATGGATG 10829 36 100.0 35 .................................... GAAATATGGGCAGTAGCGCCTCTTTTATTTTGGTT 10900 36 100.0 36 .................................... ACTATCAGGTATGTTTTTGGAGGCGCGATCGCATGT 10972 36 100.0 37 .................................... AGTCAATCCGGTGGATGGGCAAACACCTGGGCATCTG 11045 36 100.0 38 .................................... TTTGGACAACACAGGGACAACTGCTTCTGCTATTTCTT 11119 36 100.0 37 .................................... GTAAACAGCCCCCGCCAATCGTTCCCAATTAAACCAG 11192 36 100.0 35 .................................... TCCATGCGTGGCGCACATCATTTAGGCAACGTCCC 11263 36 100.0 37 .................................... TAGTAATCACCCCGTTTTGTCTTGTTGAGGGTAGCAG 11336 36 100.0 35 .................................... GATGTCGTCCAATCAAGCTGAAAGGCTTTGAGGTT 11407 36 100.0 37 .................................... GTCAAACGTGATTGACTTGCAGTTTTCAGACAGAGCC 11480 36 100.0 36 .................................... GAAATTCGTCAAGACAAAACAACCGGGTTTGCAATT 11552 36 100.0 36 .................................... GTGGTCATCTAATTAATGAAGTCGAAAAACCAGAAG 11624 36 100.0 36 .................................... TATTCAACCGCGTCGCGAGTTGGCAAAACTTTTGCC 11696 36 97.2 38 ....................A............... TTCTAGTTCTTCAAATAGTTGATACCTTTGATCTTCGG 11770 36 100.0 34 .................................... GAATCAGCAATTTTTTGAAATCCAGACCATCCGT 11840 36 100.0 35 .................................... ATCCTCAATCGGATTTCCTTTGTAAAGACTTGGGT 11911 36 100.0 36 .................................... TTCCAAGGCGTGCTGAACTTTATTGATTTAATTGTC 11983 36 100.0 36 .................................... CCCTCCCCTAGCGTTTGCACGACTTAAAATTACTTT 12055 36 100.0 36 .................................... TCTCCTCGACAAGTCGGGGAAGCCTTAAAGAAAGCC 12127 36 100.0 37 .................................... TCTCAAGAGACGCAAGCACAACTGGCAATGAAACTTT 12200 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 24 36 99.9 36 GTGTCCAAACCTTTGATGCCGCAAGGCGTTGAGCAC # Left flank : AAGCTTACAATCTACTCCAAGGATACGGAGAGCGAATACAGTATTCAATATTTCGTTGTTGCTTGACACAACGCACACGGGAAAAGTTACGTTGGGAACTCGAAAAGGTATTAGCAAAGGAAGATAATTTGCTTTTGATTCGGCTGTCACATCAGTGTGTTGCAGCAATACCGAGTTATAACCGCCCAAATACGTGGTTGTGTCCAGAGGGATCATATCGGATTGTTTGATGCATGGATATACGGTTGTTAAAAGAAACAATTGTCAAAAATCGGCTCAATGTCTTATTGGGAAAGTGTTTTATAGTTAAAAGAAGTCTCGGAGGTGCTTGCATTTTGGCAAAACATGCTATCAGCTAGGCAATACAAGCTTTTCATGATTTGGCTGCTTTACTTCGAGTGAAAATTCGGTACAATTTGACTGGTTTAAATCCAATTCGGAAGGAAGTGCTTGTAAAATCAAAATCCGATGTTTGTCAGGTAAGGATTTCGAGCATCGCA # Right flank : CTGACACCCTCTTTTCAAGAAGCGATCGCTTCCCTATTTAGTACAATTGTACTGTAAGCGAAGGGAAGGCGATGAACCTCCCTGATTGTGTTGATTACTACAACTTTTATTCATAGGATCATCCACTTGACAGATATGTATATATCTTTAGAAACAAGATAATTGTTGAGTTTGGTTAACCAACTTATCACTTAACTTCGTTGCTGTCGCGTTCCACGTTCGCGGCAGCTTTGTTAGTTTAACCACTATTTGTAGCGATCGCATGACTCCCGTCAATCCTTTGCCTAATCGCCTCCTTCCCTCTCCCCCGCACACGATTATCATTGTTATTACCACTTTTTTGAGTAATTTGACTGATTGACAAAAGTGCAATTATTTTAAACTCTCACTGTTGATTATGTGTATTTTCTGATACTTATCGCCTTAGCAAATTCATTTACTTGGCTTGTCACAAATGCCACTAAATAGGCGCTCCCTCCGGATACATCAGTTTCACTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCTTTGATGCCGCAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6816-5240 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRN01000028.1 Hapalosiphon sp. MRB220 contig_134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 6815 35 86.1 36 T...TT.C-........................... TATAATCCTAATACACGTAGAATTGATTTTATTAAA 6744 36 100.0 41 .................................... AAGTCAATCTGAAGCAGTAGAGTACTTGAGGAATAAGGCTA 6667 36 100.0 42 .................................... TTAATTATGTAAGGTAAGTAAATCGAGAGAAAAGCGATGCAA 6589 36 100.0 36 .................................... AGAACTTACACCAAAACTAGGAAGAAAAAGAGCAAA 6517 36 100.0 36 .................................... AAGATCAGTTAGTGTTAATTGGTCATATATACAATT 6445 36 100.0 44 .................................... GATGACAAGTTCTGGTACTGGAAGAAAGTCTTACCATCGGACTT 6365 36 100.0 40 .................................... ACTACCAGTCAGGCTACCATCTTTCACCGAGTCTACATCT 6289 36 100.0 36 .................................... ACGGTAAGTTCAGTCTGGAAGTATCAGACGTTGTTG 6217 36 100.0 35 .................................... TATGGAAAGCAGATACAACACTTCCAGATAGAAAA 6146 36 100.0 35 .................................... ACTTCTCCCATGTTATCTTTGCTGAAAGTTACGGG 6075 36 100.0 35 .................................... AACTCTGGCTCTGGACAGCTCGTTGTTAGAAACTT 6004 36 100.0 36 .................................... AGTAAGAATACTACCATCCCAAACTAGTTTAGCTAA 5932 36 100.0 42 .................................... AACAATGAAGTTGCCAAGGATTATTAGGCAGCAGTTATCTGA 5854 36 100.0 37 .................................... ATGTCGCAAGCCAAGAAAATGTGATTAACATACGAAA 5781 36 100.0 34 .................................... TCAAAAGAAAAATGTAGGATCTGTTTTGCAGCAA 5711 36 100.0 35 .................................... CACAGGGATAGCGCACTTGGGATGTGGATCAGGTT 5640 36 100.0 38 .................................... AATTGATATCGTTCACGAGTGCACCGGTATCTTTACCA 5566 36 100.0 40 .................................... ACTTTAGAAGCGTTTCAGCAAGCGTTAAAAGTTGACATTA 5490 36 100.0 33 .................................... AATTCTGCGAATTTCTTCAAAATACCTCTCTTT 5421 36 100.0 39 .................................... ACAACACCCTGATCTGGTAGATTGCGAATACAATTCACG 5346 36 100.0 35 .................................... GCTCAAGTGACAATTTCTGCCTCGACTTCAATTTA 5275 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 22 36 99.4 37 GTTTCCATTAATTCCACTTCTTTAATAAGAAGCGAC # Left flank : TTACAAAACTTGCAGAAGCTGTCTGCGGCTGGTATGGGAATTTTTTTAGGATATAGTGCTAATGACCAGCGTCAGTTTCTCAGTCAGGATAAACAAGAACGCTCCCAGGTTTGTATGACTGTAGAACTGTGGTTTACTGACACTATATTTCGGTTTATTACTGAGGGAACAAAGAGATTTGCAGCACATCAAATGAAGATGTCACTACCTGTAGAAGGTGGGAGAGTAACGCTGCCAAAATCGATTTTCTGCCTAAAAAAAACAGGAGATCCACTCTTTCCTAATTGCTTTCGAGTGGTATTACCTAAATGGTCTTTAGATGATGTGGAATTATTGAGATGGATTGTTGGGTTTGGTGGAAATGTCAAGGTAGTACAGTCGCAGGAGTTAGTGGAAAAGATTAAGGGAATAGGTGAAGCAATTGTTAAGGTGTATGATAATTGAACAATCAAAAATATATTTAAATTATTTAAAAAGGTCTGGATAATAATATCTAGACC # Right flank : CCCTCTTATTTAAACCCTGATTGTGCTTAATGTCCAGCTGCCGTTTGCGACAGGGTGGATGAGTATAGCAACTTTGATGTTGGGTGAGGGTGTAGAAAAACGCTGAAAAGCTTACAGGTAAGCACATCGGCCGGGTCAACGAAAAACTAAACATTTCCAACTTTAGCAGACCCCGCCGCAGAAAAAGCAATGTATTGCTTAAATTTGTCATTCGCATGAGAACCCTAGCATAATCCTAAACCAGCCTTTACCTTATGAGATAGAGAAAATTTACAGAACCATTAATCATACATATATGTATCTATCGTCCCGTGCTGCATTAATTCGCAATCTAGGCGTAGCCTTACTCAACGGTAGTATTACTCTCATTATCTTACTAATTGCACCCCTGGGCCTAGCAGCCGTCATTATCAACACCATCCTGGTTACAGTCGCCAGTTTTGTCAACGCCACAGCAGGTGATGCAATAGTGAATTTTCTGCAACCATCTCAAATTAAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCTTTAATAAGAAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 83962-81438 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRN01000074.1 Hapalosiphon sp. MRB220 contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 83961 37 100.0 40 ..................................... ACTCACCATGACTAATTTATCAGTTTTTAACAACGATGGG 83884 37 100.0 35 ..................................... AGGCGCTGAGGCGAGCATTGCGCGATATGACAGAG 83812 37 100.0 32 ..................................... TTCACATTGAATACGATCGCATTAATGACAAG 83743 37 100.0 34 ..................................... TTTGAATCAGAACTAGAAGAGGTGAGGGCTTTTC 83672 37 100.0 36 ..................................... ATCCAGTGAAGGTTAACTCTGCACAGCTTTTCACAA 83599 37 100.0 40 ..................................... AAAAAGTCTATGTCTACACCAGTTCCAAAGAATCAGCCAA 83522 37 100.0 38 ..................................... AACCTGAGCTAGAAATTTGCGACATCATTGAAGGTAAA 83447 37 100.0 34 ..................................... AGCTTTTTGATGTTGATATGTATGAGCGTGACGC 83376 37 100.0 35 ..................................... AGACCAGGCTATTGCAGATATCTACAAAGTAACAG 83304 37 100.0 35 ..................................... ACATTCTCAACAACACATGGGTTCAGGAAGCTAAA 83232 37 100.0 34 ..................................... CAAGCTTCAAAGAGTTTTGAAGTAATCACCAAAG 83161 37 100.0 35 ..................................... CGGCATGAAAAAGTTGATACTTGCAGGAGCGATCG 83089 37 100.0 35 ..................................... AAACTTTCTAACTCCTCAGTTTCATCATGAATCAA 83017 37 100.0 38 ..................................... TGACTGAGTAACAAATGCTTGGCGCAAACGTATGGTGC 82942 37 100.0 38 ..................................... GTGGGAACTATGCCGAATACAAAAAAGCACCAAATCAA 82867 37 100.0 35 ..................................... CTATGTGTGATTGCAACTTTAATTCAAAGTGCAAC 82795 37 100.0 35 ..................................... ATAGTCCAAATCTTTTTAATTATCCTGAATTTGAA 82723 37 100.0 36 ..................................... TTGCATTAATAAAAAGATGTACATGGTCAGGCATGA 82650 37 100.0 36 ..................................... AGGAAGCTACCGTCAGTACCCGGAAGGAAACGCCAC 82577 37 100.0 37 ..................................... AAATCATAAATGCTCCTAGTGAGAGTGAAGTTGAATT 82503 37 100.0 36 ..................................... ACGCAAGTGTTAGAGCAACAATTGTTTATGGCTCAA 82430 37 100.0 37 ..................................... AGTGCAAAAACCAAAGATAGTTTCAATGGCGATCGCC 82356 37 100.0 35 ..................................... TATGAAGCCTTGCTGCAACGCTACAACATTACTGT 82284 37 100.0 38 ..................................... ATCCATCTCTAATTTCAGTTGTGCGAGACTGAATATCC 82209 37 100.0 36 ..................................... GAGACTGGTTGCAAGTACTTATCATCTGTTGGGACT 82136 37 100.0 39 ..................................... ACGTGTGTAATCGAACTAGTTAGATATCTGCGTTCGCTG 82060 37 100.0 39 ..................................... TGCCTCGTACTCCTGAAGGTTTAAAAATTGTTAATTTTA 81984 37 100.0 37 ..................................... CGATCGGTGATTTGTTGTTAACTAAGAAGATTAGGGT 81910 37 100.0 34 ..................................... CAGTGTTTAGTGTCACAGAAGATCAATTTGATAC 81839 37 100.0 35 ..................................... ATGTAGTTGTGCGCGAATCATTCGCGCTCTCTGCA 81767 37 100.0 36 ..................................... GATTATGCTTGTGCGATCGCTCCCATGTGCTTCATG 81694 37 100.0 35 ..................................... TATGCAAAGCTAACTGAGTCTGGCGGAGTCTACAC 81622 37 100.0 36 ..................................... GGTGCGGATAATAACTCCGCCTACTCGCTTCGGTCG 81549 37 100.0 38 ..................................... GTACTTATTCCACTCCTCTTTTGTTAGCGGCCACTCTC 81474 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 35 37 100.0 36 CTTTCAAATTAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : ATGAAAGTGGACAGAAACATCCTTCAGGTGGTTTAAGGTTGCTAGCCCTTTGTGTGACAAGGCATTGAGACTTACAGCCAAGGGGACAGTTCTCAATTCCTGGGTTGAGTTGAGAGTAAAGAGGTTGTAAAGAAAGTTTCACCTTACTTACCCTGTGTGATTTGCACCTAGTTTAATACTGGTTTCAGGAATATTGTTATCAAAATTTGATATCAATGCTTTTTTTTGACATGACATTGTATAATTTTTGTAAAGTTATCCTTTGTGCCAGTAAGAAAATAGGCCTATAATCTGCAAATCCAGCTTAGTTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGCCAGAACCTTGACAATTCAATAATTCCAGAGTTTTGAGTAATCTTCGGCCCACTGTTTCTAAAAGCTGAAATGGACTTTTAAAACAGTCCCGCCAAAATTACTTATAGAACTCGCTCTGTAACTCAGTTGTGGCTGGCGGA # Right flank : CAACAACACGGCACTCTGTATGGCAGAAACTTAGATTACTTTCAAAAAAGTGAGGTTTTTATGACCGAGGTAAATTTTGCTGCCATGAGCAGAGAGCAGCTAAGGGAATATGTGAGAACACATCCGCAAGACCAAGCTGCATTCTACGCATACATGGACAGGCTGCAAAGCGAACCAGGGATTGATATAACTTCGATGGATCAGTTTGAGCAACTGGTTAGAGAAAAAATCAGACAATCCCAAGTTGAATAATAAACCAATGATGGAAGTGATCGCGCATCATCTCACAGAGCAGAACTGCGATCGCACTACAATAAGTTAGTTGGTCAAAAAAACTACTTTCGTTCAAAAGGTAAGTCTTTTGGTTCACAAGACAAGTTTTTTCTGCTAAACTCTCAAGTTAATGATTCCTAGCAATATCTGGGAATATCTTTCTCAAGTATGCCCGCCAAAACTGATGGCAATTACTATCAAATCGCCTTTGCTCTAGAAATCCTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 94428-95942 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRN01000074.1 Hapalosiphon sp. MRB220 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 94428 37 100.0 38 ..................................... GATAGCAAGACTGGAGAGAAAAAAGATATTACATACGG 94503 37 100.0 36 ..................................... ATTTGCATTTGACCCAGCGAGCCATCATGCTTACCT 94576 37 100.0 39 ..................................... AGTAAACATGTCTCAAATCTGTAAAATTGGGCGCTGGGT 94652 37 100.0 36 ..................................... GATAAAATGAAAAAACAACAAATTAAAAATGTTATT 94725 37 100.0 35 ..................................... TGCGATTACCTGACCTTCTCAAAGAAAAATGGCTT 94797 37 100.0 32 ..................................... TTTGCGCTGATGAGTGAGTCACTGATTGCCAA 94866 37 100.0 36 ..................................... GAGGTCAAAGACAAAGGACAACTACTTCGTATTCAG 94939 37 100.0 40 ..................................... TTAGTGCATGAGTTACCTAATCAAAGACAATCAACCACAA 95016 37 100.0 37 ..................................... ACGAATTATCATTTCATCATTTAAGAAACTCAGTTAT 95090 37 100.0 36 ..................................... ACGAGTCACCCCTTGGTCGCATCGCATCATCAAAAA 95163 37 100.0 37 ..................................... CGTATTCACAGCACCATTCTCGACAAACAACCCTTGA 95237 37 100.0 35 ..................................... TTTGATTTCCTGTAACAGGATATCATTTAAATATA 95309 37 100.0 35 ..................................... AAACTTTCTAACTCCTCAGTTTCATCATGAATCAA 95381 37 100.0 35 ..................................... TTGAAAAGAAAAGCGATTATTCTCTGAAACAAAAT 95453 37 100.0 39 ..................................... AATAGTGCCTGGCTTCGTGGTGTGTCTGCCATTGCTGGA 95529 37 100.0 35 ..................................... CAACCTTTTTCTTGTAGGGCTTTTCCTAGTTCGAT 95601 37 100.0 37 ..................................... TATTTTAGCATTTCTTTGTATTCTTCAAGACGCCTAC 95675 37 100.0 44 ..................................... TGTCACAAAGTTTGAGGTCGGGGAGTGCGCGAAGCGCTTTCAAA 95756 37 100.0 38 ..................................... ACTGATAATGGCAAGCGAGCTAGTAAATCTGTACTTAT 95831 37 100.0 38 ..................................... TTCTGACAATGTTGTCGGAACTACTCAAGCGCTACGGG 95906 37 94.6 0 ..............C.............A........ | ========== ====== ====== ====== ===================================== ============================================ ================== 21 37 99.7 37 CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : TTTGTTCTACCTCATAATTTATGATTTGCCTGATAATAAAAAGGCGAATAAGCGGCGAACAAAACTCCATAAAATGCTCTCTGGCTATGGAACTTGGACGCAGTACAGTGTGTTTGAATGTTTTTTAAATGCTGTACAGTTTGCTAAATTGAAGGTGCAAGTTGAAACCTTGATTAAACCATCTGAAGATTCAGTTCGTATTTATGTTTTGGATGCTGGAGCAGTACGTAAGACTATTACCTATGGTTCTGAGCAACCACGACAGCAAGAGACAATAATACTATAATGCTGATATAATACAAGTGAATTATTGGCAGGGCGAAGCATGGGCAAAAACCCCCTACCTCCCGCCAAATCGACAGAACCTTGACAATTCAATAGTTTCAGCAGTTTAAGTATGAACATAGAGCCTAGTCATAAATGCCGCAAACGGACTTTTAAATTAGACCTGCCAAAAGTGGGATTGAGAATGGCTCTGTGATTAACTTCTGGCTGGCGGA # Right flank : CTTGCTAAAGGATTTAAAACCTTGGGAGCTACCATTCGTGACAGATTAAAATACTGACTCATTTGTCAATACGTCATATGGTATAAAAATGTCCGAAAAATCGTGAGAGAAAACATTATTTTTGGGTTGGCGATGCCAAAGGCAAGCCGCTCTGCGTCTACGTGTGATATTTAAACGTACCATTATTTTTTGCTCTCAAAACGCAGTACAAAGACAAGCTTGATACCTCATCTATCACTCATTTTTCAGCATAATTTCTAATTGACAAAAGGGATATTGTCTTAATGTGTCAGGAATGGTGTAAAGCGATCGCTCTTTGTATTATTTCTGCTGTATTTGAGGCGATCGTGTAGCGGCTCATGAAAGAGCATCGCTCTTTGAAAATCGCCTCAGAAAAATTTGAGTATCTGCTTTTTCCTTGTACAAGGGCGATCGCGCCTTTCTTTAGTACTATTGTACTGTAAATAGTGAAGTCGCCTTAGTCAAAACACTGATGTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 29314-30371 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRN01000084.1 Hapalosiphon sp. MRB220 contig_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 29314 37 100.0 40 ..................................... TTGGTACTTGTGCCAAAAAGCGTGTTTCTGAGAAACAAGA 29391 37 100.0 38 ..................................... ATGATGACCTCGTGTTCAACTGGGACAGCTTCTAAGAA 29466 37 100.0 39 ..................................... GCCCGTACTTGTTGACATTGCTCTACTCGTCTGCCATAA 29542 37 100.0 34 ..................................... ATATGAACAAACAACAAGCAGCAGAATTTCTCGG 29613 37 100.0 38 ..................................... AAAGCTGAAGTATTCGATCAATTAAATCAAGAATACAA 29688 37 100.0 36 ..................................... TAACTATATTCAAAAAAGATATACAATTTGGCGTAT 29761 37 100.0 33 ..................................... TGGATCCGTGAATGTCACATTCACGGATTTTGT 29831 37 100.0 34 ..................................... GCGCTTTTTTGTTGTCTAATTTTTGTACTTCCAT 29902 37 100.0 37 ..................................... TACTCAGATGTCGATGACCACTAACTGCTTAGCGGAA 29976 37 100.0 36 ..................................... CATTGCTCAAGATTCTGCCAAGTTCATCAACAGCGA 30049 37 100.0 33 ..................................... CTTCTGATATTGCAGTACTCCAACAAGTTCAAG 30119 37 100.0 36 ..................................... ACTTGTAGATTTGAGGAGCGATCGCAGATATGTCAA 30192 37 100.0 34 ..................................... AAATGATCAACCTTGTTCCAATCATTAATCGTGA 30263 37 100.0 35 ..................................... GACTACGTGATTTATCAGCGAGAAAGGCAAGTTTG 30335 37 89.2 0 .................................GGCT | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.3 36 CTTGAAACTTAGCGAATCCTGGCAACGGGATTGAAAC # Left flank : CAAGAGTTGGATTTGAATAAGTTTACTGTTGATGAGGTGGAGTTTTTACAGCTTTATTCTTTGGTGGTACGTGCGCTGCGGTTGTGTGACCAAAGGTCTGTACAATTGATTTAGGTATGGAGCATTGGGCATAGCGATGGTACACCTTCCTTCTGCCCAACAACTCTATCCCCTTGTGGGTGTGGTTTTTCATGAGTAGCTGAGTGACTACTCTGTCTCTGTCCCTACATACTTTTTTCCAAAAGTCTGGACTTTGTTCGAGAATACCCATATTATAATGTAATGCTATTAAATTGATATTTGGCAAACCGAAGCGGGGGCTAAGACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTTGACAAGTTAATACTTACAGCGTTTGGGGATTTGCGACAAATAGGAATTTGTTGCAATAAGTGAGGCTGAAATGAGGTCATTTTTGAGGTCTGCCAAAAATGCTTGTAGAATCCTTGCTCTGTAAGGGTTTCAGGGGGCGGA # Right flank : TAAGGCTAGAGAAGGTGTTATCTTGTGCCAAGTGGTTGAATACATTGATACGACTGGTTTTTAGGTTTTTAGCCTTCAAATATATAAAAGTTTACACTGTTCCTCTTTTCAATAGTGTAGGAACATTTCTTCTATAACAGGAAAGAAATTGATGAATTTTTGGCATTAAAACCACCGAAGATGGGGACAAGTTCCATAACCAAAAATAAAATCGGAACTTTGTATCTCTGCGTGGCACTTCATAGCAGCTTCTTTAGCTTTAGCCCCTGTTGGTGCATAGTATTGCTGTAACCAAACCTGACGCAAGACTTCTACGGCTGGCAGTTGTCGCAGTTCGGTGGGGGAAGTTTGGGAATAAATGTTATCGAGTAAATAAAAGCCATCGGCCCCAATTGTCTGGGCTAAAACTTCTCGCTCTGAAGCTGTTCTAGGCAATCGGGTATCTTCAAAACGTCTGCTATAGCGGTCATACCACTCGGTGGGAGCTAGTGACTTCAGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTAGCGAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //