Array 1 2406646-2405625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054503.1 Flavobacterium columnare strain F2R64 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2406645 36 100.0 30 .................................... TTTCTAGCTTTAGTCACCTCATCTTTTGAA 2406579 36 100.0 30 .................................... TCTGAGTACTGAAAATTATAGCCATTGTAA 2406513 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2406447 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2406381 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2406316 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2406251 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2406186 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2406120 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2406054 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2405988 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2405922 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2405856 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2405790 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2405725 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2405660 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2975646-2973252 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054503.1 Flavobacterium columnare strain F2R64 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2975645 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2975631,2975642] 2975573 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2975507 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2975441 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2975376 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2975267 36 94.4 30 T.....A............................. AATGGTCGGACAACCTATATACACCTTCTT AATAT [2975255] 2975196 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2975130 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2975064 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2974998 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2974932 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2974866 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2974800 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2974734 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2974668 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2974602 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2974537 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2974471 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2974406 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2974341 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2974275 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2974209 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2974143 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2974077 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2974011 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2973945 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2973879 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2973813 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2973747 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2973681 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2973616 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2973550 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2973484 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2973419 36 100.0 30 .................................... ATTATTAAACTACTTAATTTCCCATCTCTA 2973353 36 100.0 30 .................................... GCAACAACCCTCCGAACCAATACCACCAAA 2973287 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 36 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //