Array 1 42314-43653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSHM010000027.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42314 28 100.0 32 ............................ TACGCCCCCGCGTCCGTGCACGTGTTTAATAA 42374 28 100.0 32 ............................ TGGGATATTCCGGCGACCTGGTACGGGGATGT 42434 28 100.0 32 ............................ AACTTCGTTAACAGCGACTGCCGAAGCCGTAT 42494 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 42554 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 42614 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 42675 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 42735 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 42795 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 42855 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 42916 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 42976 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 43036 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 43096 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 43156 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 43216 28 100.0 32 ............................ TGTTTGAGCTTCAAATTGCTCACCTGTTTCTA 43276 28 100.0 32 ............................ GATAAAAATAATATTGGTTACTCCACGATAAT 43336 28 100.0 32 ............................ GATCTCAGTGCGGGACTCTGCTTTCATCTCTC 43396 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 43456 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 43516 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 43576 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [43624] 43624 28 78.6 0 CC..................A...C.CT | T,C [43642,43646] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52713-53642 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSHM010000027.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52713 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 52773 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 52833 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 52893 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 52953 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 53014 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 53074 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 53134 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 53194 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 53254 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 53314 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 53375 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 53435 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 53495 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 53555 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 53615 27 92.9 0 .......................-C... | T [53635] ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //