Array 1 1061259-1062748 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060421.1 Klebsiella pneumoniae strain BA2105 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1061259 29 100.0 32 ............................. CATTTCATAGTGATTCGACTATTTAATTAACA 1061320 29 100.0 32 ............................. AGTTCACGACAGGCAAAGTCTTTACGGTATGC 1061381 29 100.0 32 ............................. TCTGCTGGTTACAGGAGAAAAAAATGATTGGT 1061442 29 100.0 32 ............................. TTATTTCTAAACTAAGTTTTGTTTCATGCAGT 1061503 29 100.0 32 ............................. TTTTTTTGACGAAGACGGCAACGAGTTAGAAG 1061564 29 100.0 32 ............................. GTCTCTGCCAGTTTTACCTGCTCAGCGGATAA 1061625 29 100.0 32 ............................. CTGACAGCTGGCGCTAACCCGTCGTTTATCGC 1061686 29 100.0 32 ............................. CGTGAGCATCTGGGCATCTTCAGTGATAGCGT 1061747 29 100.0 32 ............................. TATTTTTGAGATGATGGATTGTTGCACACCAG 1061808 29 100.0 32 ............................. CGCTTCTCGGCTTCTCTGAATTTATCCGCCCA 1061869 29 100.0 32 ............................. ATCCCGACCCGCTCCTCCAGAGCGAATACGAT 1061930 29 100.0 32 ............................. TGCTTTATGGCAAATAAGAGAGGATATAACCA 1061991 29 100.0 32 ............................. GCGTCCGCCTCCCAAATAGCCAGGCTGTTATT 1062052 29 100.0 32 ............................. TAAATCCCAGCTGGTTTGACGTAGTGGCACTG 1062113 29 100.0 32 ............................. CAATGAAGGCTTATAAGGGTGAAGAGAGCAGG 1062174 29 100.0 32 ............................. CAGTCGGTAACGGCTGGGCGTGACCTCAAAGC 1062235 29 100.0 32 ............................. GTGCCATTTTTATTTTGCTTAAAATAAATATC 1062296 29 100.0 32 ............................. CCTATTGTGTTCAGTCGTAACAGCTGAATCAG 1062357 29 100.0 32 ............................. GGCGCGGCGGAATAACCACTTTATGAGCAGGT 1062418 29 100.0 32 ............................. GCGACCATGCCGTAGTCTTCAATGACGTAATC 1062479 29 100.0 32 ............................. CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 1062540 29 96.6 32 .....A....................... TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 1062601 29 100.0 32 ............................. TCACCCTCGTAGCCGATACCACTTTCGCGCAG 1062662 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1062720 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTTAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTACCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40808-41014 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060422.1 Klebsiella pneumoniae strain BA2105 plasmid pKOX, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40808 28 100.0 33 ............................ GCGTGGTTAAGCCCTGACTGCTCGCGGCTGTAA 40869 28 100.0 33 ............................ GGCATTTTACGCGATGGTTGAAGAAGCTTGTTG 40930 25 85.7 33 .A...............---........ GAGAGACGCAAACACGGCACTACAGCAACGAGA 40988 27 85.7 0 G..A.........T..........-... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.8 34 AGTGTTTCCCCTGCGTGCGGGGGTTATC # Left flank : TGGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGCATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACATTGCCAGAAGGTTTTATTGACGGTCGAGAACTGGTGGCGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCATTGATGAAGGAAATGTGTTCGGGAATGAAGCTTTGTTATCGGCAGCGGCGTCCCTGAAAAAATGCGGCGTTGTGTTTACTGCTCAACGTCTGAAAAATGCAGAGAGCCTCGCGGCAAGTTTAATGGCGCGGCGTGTGCTGATTTTTTATATCGGTGAGTATGAGTATTTTAAGTTTGAAGTTGCGGCACACTATGATCGGCGCAGGAAATCCTGAACCTGCGGAGGTGGTTTTTACGCCTCAGAATCTGGTGGAAAATGAATGAATAGAATTTGCATTTGTAATCAATAGTATATAGTTAG # Right flank : CTGGGCTATATCGAACGCGTAACGGGGAAGTGATTTTCAGAAGAAAACATTCGCTCGCAAAATACCTATAGCTAAAACCGGTTCGCCGGTTTTTTTTGTGCCTGCGGTATTCGGCATATCTTTTGCGGGAAGGATAATAGATTCCTGCGAAACTATTCTATTTGAATAAGGTGACAATAATGGCTCAGGTTCAGAGAGGTAAAACGGTTCCCGTTCGGCCATCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAGCATGACTCCCCGGAGAAGGCAAAAGCAGCGGCAGACGCTGCAATTGATGCTTATCGGGGTGAAGCATGTGATGGCTGGCCTGATGAAGTGACCGGCGTTACGTGGGGTGTGGTGGCACAACGAGCGGCAAAGTTTGGCGAGCGTAAGCGCACCAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCA # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTTTCCCCTGCGTGCGGGGGTTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //