Array 1 831-2264 **** Predicted by CRISPRDetect 2.4 *** >NZ_OABE01000021.1 Neisseria meningitidis strain Neisseria meningitidis isolate R598, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 831 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 897 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 963 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1029 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1095 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1161 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 1227 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1305 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1371 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1437 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 1503 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1569 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1635 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1701 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1767 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1833 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1899 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1965 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 2031 36 100.0 30 .................................... GTTGCACTATTATTCATTGCATCATCATTA 2097 36 100.0 30 .................................... TGCGGTTTGCAACCAAACGCATATATTTTT 2163 36 100.0 30 .................................... AGCGCGACGACGACAAAGAAGAAACCGTGA 2229 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 22 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //