Array 1 961-216 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNS01000207.1 Geobacillus stearothermophilus strain A1 contig_206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 960 29 100.0 35 ............................. ATGAGTTTTCTCAATGCCCCGGCAATCGCATTAGC 896 29 100.0 36 ............................. CTGTCCAGGCTCAGCTGATGACTCCGACGACAAACG 831 29 100.0 35 ............................. CGATAGGATTTTGTATTCCTTTTTCATATTCTATT 767 29 100.0 40 ............................. GCACAAAAGAAGAAGAAAGCCGCGCCGAAGAAAAAGGCAA 698 29 100.0 35 ............................. TCATCATCAATATAAAAGAGGGGCGCTTCATGCGC 634 29 100.0 36 ............................. CGGTTCAACCGCGACAACGGCAGCGCGCAGTTTTTC 569 29 100.0 35 ............................. TATCATCATCAATATAAAAGAGGGGCGCTTCATGC 505 29 100.0 37 ............................. ACGTCTACACCGTTATTGAGTAAACGAAGCTCCCAGC 439 29 100.0 35 ............................. ATGTTTTGGTCTAATGTATGATTGAACGAGATTAC 375 29 100.0 37 ............................. ATGACGGTACAAAAATACAATTTCGATATTGACATCG 309 29 100.0 36 ............................. TTGATTTGTTTCGTTACGGCTTTGCGAAAGTCTAGC 244 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 99.7 36 GTTTTATCTGAACGGAGTGGGATTTAAAG # Left flank : AGTCGTTTTCTTTTCCACGCTCTGCATACGTTTGGACGTCAATGCCAAAGTCATGAAATTGGATCACGTCCTCCTCCCCCTCCTATGAACCGATGGATTTTCTCTTCCGAAATAATTCACAAAAAATTTAGCACATTCTTTCAGAAAAGGGGAGAGGGCTTTCTGAAGGAATGTGCAAAAAAATGTCTCTTTTGTTCCGAAATAAAGTGATAATTTACATGCTTGGTTTTAAACGAG # Right flank : GTTAAAGCCGATGATAAAATCCCCAATATAGCCGGAATAAAATTCCCCACTTACAATAGAACCATAGTGTCAACGAGAGGAGCTATGGTTCATGATTACGAGAGGGGAATTTTTTATGATCAAAGAGATGTATGAAAGGGGAATGAGTATTTCCGATATTGCGAGGGAATTGGGGATCGATCGGAAAACCGTCCGAAAATATATTCACTCCCCCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGGAGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 242-4888 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNS01000046.1 Geobacillus stearothermophilus strain A1 contig_46, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 242 29 100.0 35 ............................. AGATACCGTCGGTTCTCATTGTGTCCAAAGACACA 306 29 100.0 36 ............................. GAATGTTGCGTTGCAAGATGAGGAGGTACCGATTCT 371 29 100.0 36 ............................. CGGCGATCGGATTTCAAACCATTCCGCTAGCTCGTT 436 29 100.0 35 ............................. AATCACCGCAGCTGTTTGTTCTCCCCATCTTACCG 500 29 100.0 37 ............................. ATTTCAACAGCTTTTCAGTCTGCCGCTGGCGATGTTA 566 29 100.0 34 ............................. TTATGATCGTCATCTAAAACGATAAAGTGAACAG 629 29 100.0 37 ............................. ACAACGGCCGCTATTCCTTGAAGCACGTTTACGGCAA 695 29 100.0 35 ............................. GGATTCAACCGGAACAAATCGTCAGGCTTATTCAA 759 29 100.0 35 ............................. GTTCAGCGACTCGATGCTATCACAATGTCGTGGTT 823 29 100.0 35 ............................. GCACGGAGCGGCGATAGACAACAGGGGAAGGGTAA 887 29 100.0 38 ............................. CAGTAAATCCAACTTTGTTTCTATTCTCTCCACACTTT 954 29 100.0 35 ............................. TGTTTCCTGTTTCGCATGTTGCTCATCTCCTACAA 1018 29 100.0 35 ............................. GCTTGTGCCGCTGTGGTTTGACGGCTTGTGCAATA 1082 29 100.0 39 ............................. GGGGATACCAACTCTAATCCTAGTCCAGCAGATCAAACA 1150 29 100.0 39 ............................. AAGATGTTCGGGCAGCTGGAGTAAAGGAACGTCATTTTG 1218 29 100.0 36 ............................. GAAGCCCACGCAACACAAGCCGCGTGATGAAGGCGC 1283 29 100.0 38 ............................. GTTGACGGAATGACATGCGGTTTGTCGCGTTCTTCCGG 1350 29 100.0 35 ............................. CGCAATACATTCCATCTTCAAAGTAAACAACCCAA 1414 29 100.0 36 ............................. TGGCTCAACAACATCGCCATTACGCAACGCCTACCT 1479 29 100.0 35 ............................. GGCGTTTGCGCTGGCATTCCGGACATCTCTTCACC 1543 29 100.0 38 ............................. GCTTAGCGAGGTTGTTCCACCATTGCAGCTCTTGTTCA 1610 29 100.0 36 ............................. GTAGAAGCGGTTTGGAATGCTTATGATCGTTCAGAC 1675 29 100.0 37 ............................. AAGGAAGTTGACGCGGAGGTGTTGCGTTTCTATCGGC 1741 29 100.0 35 ............................. GCTTGGGAGCTATCGCAATTCACGCACCTTTTCTT 1805 29 100.0 37 ............................. CGATCTCCTCGAGCGGGCTGTATTTGCTCTGAAAATG 1871 29 100.0 37 ............................. AAAGCCGTACGCACGAAAGGCGAGATTCGTATGAGTG 1937 29 100.0 37 ............................. CACAGCCGCTTGCATTGAACGCCGAAATTGAATACAA 2003 29 100.0 35 ............................. GCGAAGTCCGCCGCATCCGCAACCGAAACCAAAAC 2067 29 100.0 36 ............................. GTCCGCTATTCCACGTTCCCCTTGACGCTCCTGGCC 2132 29 100.0 36 ............................. TGCATCGGATAAAGCCAAACTCGATGGGATTGCTCC 2197 29 100.0 37 ............................. ACGGTGCTTCTGGCGGACTTGTCGGATCAGTCTTCAA 2263 29 100.0 35 ............................. CTACATCGTCGATCGGTTTGAGGGCTTGCGTAGAC 2327 29 100.0 36 ............................. GGGGGCGCTCGCGTTGGGAAGTATTGCGGCGGGTGT 2392 29 100.0 38 ............................. TGAACCGCTTCCGGACGATTATCAGCGACAAAAAAGAG 2459 29 100.0 35 ............................. TCTGCTCCTGTGATTTCTGGCTCGGATTCTAACCT 2523 29 100.0 35 ............................. GCTTATTCGCGGATATGGGGCAAATGGTCTTGTTG 2587 29 100.0 37 ............................. GCCATGAACGCGTCACGGTCGCGTCGTGATTTTCTGC 2653 29 100.0 37 ............................. GGGCGTACGGTCTTTCTTATTCGCGCGCTGATATTGT 2719 29 100.0 35 ............................. TCCTCACCTCGCTAGACGCTTTATTTTGCTCTATG 2783 29 100.0 35 ............................. GCGATCTTCACCCAAGATGTAGAAGCGTCGTTCCA 2847 29 100.0 36 ............................. GCGGTATGTCTCCGCTTTCTCAGTCTGATTTACGTG 2912 29 100.0 38 ............................. TTGGCAAATGCGATAAATTCGTTACAAACATTTCAAAA 2979 29 100.0 37 ............................. TCACAGGCGGCGCATCCATCACATTAGCATACCTTTT 3045 29 100.0 36 ............................. TAAACGCCTTTCATGAGATTGATGTCGTCTAAATTT 3110 29 100.0 35 ............................. ATTGATGGGCGACAATATAAGCTACGAGTTCTCAC 3174 29 100.0 36 ............................. GCGTTTTTCGCCCGTGTGGGTCAGCATAGGGGTTGC 3239 29 100.0 35 ............................. ATAGTCCTCGGATTTCGTCGCATACTTTGAAAGCT 3303 29 100.0 35 ............................. CAGGCGTGTTTATTATAGTGTCCCCAAGTAAACAA 3367 29 100.0 35 ............................. CACAACCTGCTTCATATCAAAAAACAATCGAACGG 3431 29 100.0 38 ............................. TTATATGCCTCTTTTTTCTTGTCTGGATCAATAGGTTC 3498 29 100.0 38 ............................. GCTATATTAAAAATCTTTTGCCTTGGTGATCCTGCCTT 3565 29 100.0 35 ............................. GATGATCGCTCAACTCATCATACTTGCGATAAACA 3629 29 100.0 35 ............................. CGTGTTGCGCCGGATAGGACGATAGAGGACACTGT 3693 29 100.0 38 ............................. GCTATTGAATTTTGATGTAAATTTTACGCGCTTGGACT 3760 29 100.0 36 ............................. GTTGCTCCAGATGCTACAATTGAGCGTGCAAAGTCT 3825 29 100.0 36 ............................. AGGCAAACCTGGCACAGACGGAGACGGATCAAGTCC 3890 29 100.0 35 ............................. GTAGCACCAGCCACATTCCAAGTCCGATCAGACGA 3954 29 100.0 35 ............................. GACGCGTCTCCGCCGCCGTCTGTTTCATTTCACGA 4018 29 100.0 35 ............................. GTTAAAGTGAATGCTATTGATGAAGTAGATAACGT 4082 29 100.0 35 ............................. CGTCAGCGCATGCCCACACGGGCGTTTTTCGCCCG 4146 29 100.0 35 ............................. ATGATCTCCGCAAGTAAAAAACCGCGTCGGGATCT 4210 29 100.0 38 ............................. TATCACGGTGGTACATGCCCGTTTAACAGAAATGATTG 4277 29 100.0 36 ............................. TCTACAGGCACCATCGCATCGTTTTGGAAGATATAT 4342 29 100.0 37 ............................. GCTATTCAGGTCTCACAGAGTGATGTGCCAGATATTT 4408 29 100.0 35 ............................. GATAAGTTTGATGCAGAAATGGCTTGCGTTTTATT 4472 29 100.0 35 ............................. CGTGCCTTGACGCTGGGGGGTCGCCCCTGCTATGC 4536 29 100.0 36 ............................. TTATATTATACTTAACTATATATTATCTATCTTCCT 4601 29 100.0 37 ............................. GGTGAAGAACTTTGCCCATAGACGTTGTTCCGGTCTG 4667 29 100.0 36 ............................. GATGAATGCGCTTGTTGAACAGTCTAATAATGTTGA 4732 29 100.0 36 ............................. TGACGTTCGCGATGAACGTCACGGAGCACCAAGATG 4797 29 100.0 34 ............................. TCGGAACGCCTCTTCTCGTTTCTTGCGGTTGCCA 4860 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 72 29 100.0 36 CTTTAAATCCCACTCCGTTCAGATAAAAC # Left flank : ATGGGGTATTAGCACGAAAGGGGCCGAATCGGCCTCTTTTGTGCTTTCTCTTTTCCATAGGTCCATCAGGCGCGCTGGAAATCTTCATCTGAAAGAGCGTGCAAACGTTCCGAAAGAATGTGCAAAATCCGGAACAATCCGCAAAAATTTTGCACATTATTTCCGAATCCGCCTGAAATAATTTGAAAAAGGGATTCTGAAATAATGTGCTAGTTTACACAAGCAGCTTCCTCGTTGAACGC # Right flank : CCCCTATCAGTTACAAAGCAATATTCATTGATGTAGCAGGGAATTCCGGCTAATGCCTACACAACAATTATACCTCATTTTGCAGTAAAGTAGTAATTGTGTTTTCTATGCTACACAAATAATGACACACTTCCCTTGATAAATCAAGCTTTTCCCCATTTATCCGCTAAAAGGAGGTTCACTGCAAATTCTTAAACTTAAAGGAACAACTCATCAAAATTCTTTTCCTGACCAAATACCCGCTTTTTTATATTCTTCGGATTTTCTACTTCGTATAAGTAAATGGAGTCTTCTTCTTTATCAATGATCATCTCCAATTCATACATGCACTTCATCAGCAGACTTTTCGAAATCTCCCCTTCAAATACGCTATTTTGCGTCCAAGTGAGATATTCCTTTAATTTTTTGCAAACTTTGTTGACCCGCTTCTCCGCTACGTCATACGTAATGATAACAAACATGGCTCACCACCAAGCTTTCAACGGTTTATATCGTTCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCACTCCGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 237-532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNS01000005.1 Geobacillus stearothermophilus strain A1 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 237 30 100.0 37 .............................. ATAAGTGAGAACCGTGAATTGAGGAGTAGCTTTTTCC 304 30 100.0 39 .............................. CTCGATTGTTGCGACTATGCCACTTACCGCGCTCGTACG 373 30 100.0 36 .............................. CACCTGCGGAGTGGGTAGCGGCTTTGCAAGAAAACC 439 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 504 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTTCGTCCTCATCAGCGACGCGGAGATCCAAAGGGTGCATCGAATACGCTTCTCCCCACGGAAGGAAAATATACCCATCCGTGGCCGCGAAGCGCACCCTAGGTCTGTAAGATATCCACAAAACTGAAAAAGGATGTAAGGGATTTTGTCGAAAAATATTTTTTGGACACCCCTGAGGGGCCGAAAAGCCTTGATAAATCAACATTTCTAGAGGGAGGAATAATGATGAAAGGCATG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACTGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8922-11417 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNS01000095.1 Geobacillus stearothermophilus strain A1 contig_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 8922 30 100.0 35 .............................. TGATAAGTCAGTCCGGCGATTTCCCGCCAATCCGG 8987 30 100.0 35 .............................. TAGCGCCACAACAAATAACAGCGACACTGTAAAAA 9052 30 100.0 36 .............................. AATCGTGGGTGTTTGATGAAGTCCTCCCAACCATCC 9118 30 100.0 38 .............................. TTGGGGATATCGAAAAATACCGCTTCAAAGGCGTGATT 9186 30 100.0 35 .............................. GCGCGATCGTCAATAACAGGTCTTTGCCCTCGTTC 9251 30 100.0 36 .............................. GTAATCGTTGAAGTGACATAACCATTCCTCCTTCTG 9317 30 100.0 36 .............................. GTAATCGTTGAAGTGACATAACCATTCCTCCTTCTG 9383 30 100.0 38 .............................. GCTGTTCCGGTTGGTGATGCTTGGGCGAATCCGTACAC 9451 30 100.0 37 .............................. TGGACAGTGAATTTGCGACGGGCGTTTTCGCAGTAGA 9518 30 100.0 36 .............................. ATTTCGGAAAAGCGGCCTGATGTATGCTCGAGCCAA 9584 30 100.0 35 .............................. AGATACAACAAACGTAAATCTTGATCCGTGAGTTT 9649 30 100.0 39 .............................. ATTCGCTCGCGCTTCAGAACAGGCTCAATTTCTCTCGCT 9718 30 100.0 38 .............................. CTCGCTTCGCACTTGCTTTGGTGAATCGTTCAATTTGC 9786 30 100.0 35 .............................. TCATACCCTCACCCCACTAAAACGCAAGTGATTCC 9851 30 100.0 40 .............................. GCTGGTTGTAAATCTCCATTTTCACGCGATAAATCTCTTT 9921 30 100.0 35 .............................. TCGTTTCGTCTTGTTCGTTGTCTCTGCTCCGCTAG 9986 30 100.0 38 .............................. AGTTGCTTCTCGCTCGCCTTTTGCGACACGCCCGCCTC 10054 30 100.0 36 .............................. TTTTACCCGGCCGCTTGGAAGTCACTGCACCAACAT 10120 30 100.0 36 .............................. CCTAGAAGAAACGCTGACTATTATAAACAAATCGCC 10186 30 100.0 36 .............................. ACCAACGTATTTTTTCCAACAATACACGCTTTGCAA 10252 30 100.0 34 .............................. CGAGATGACGCAACCATTCCAACCAGAGCGACAG 10316 30 100.0 36 .............................. ACAAGCGGATCGACTGCGGCTTCGTTGCCAATTTTA 10382 30 100.0 36 .............................. CTGAAAACAGGGTGTATAGAGGTTTGGCACGAATCA 10448 30 100.0 36 .............................. TCATCGTCGTAATCTTTTGCGTAGCGAGGCGCTCCG 10514 30 100.0 35 .............................. CGGCTTCAAAAGCTAAACGAGCCAGACCCATCGTA 10579 30 100.0 36 .............................. TTTCATCATCACATGCGGTTGAAATTCGATTGATAC 10645 30 100.0 37 .............................. ACCGCTATGTCGAATTAATCGAAACCATCAGCCGCGA 10712 30 100.0 36 .............................. CAGTTAGCACAAGAAACGGATACATCAGGAATGGAG 10778 30 100.0 41 .............................. GAAGCCACCCGTGGCGATGACATTGTGGTTGTCACGGTCGA 10849 30 100.0 37 .............................. ATTGGCAAACGGACGAGTGACGGCCAGCGTAAATGTG 10916 30 100.0 39 .............................. ACAACGCATGGGACAGTATTAAAAGCTTCACATCGTCTA 10985 30 100.0 39 .............................. ACACAAGAACAATTGCGCATGAAAGACCGACGGATGATT 11054 30 100.0 36 .............................. GTTCTCAATGTGCTAATCACTCAATCGCGGTGAGCG 11120 30 100.0 39 .............................. AACTGGGGGAAATACAACCTCACTAAAGGCGGCAAGCCG 11189 30 100.0 37 .............................. ACAATCCGCAAACAGCGAACGCCGAGGGGTTCTACAA 11256 30 100.0 37 .............................. GATGTTAGGAACTAGCTTTTCGTTGCCCATGATTTCT 11323 30 100.0 36 .............................. CCTGTGACAATCCATTCAAAGGCTTCCATTTTCTCA 11389 29 90.0 0 ....C............A.......-.... | ========== ====== ====== ====== ============================== ========================================= ================== 38 30 99.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCGATCTGAAGAGGAGGAAGCAAAACGGCGACACGAGGGGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGTTAAAGCAAGGGATGAAGCAAGGACGCCAAGAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACCGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGATGGTCCTTCGCCGTCAAGCCCCACATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAATCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CCTGCGCTAACGTCATAAAACGTTCGGCGCTTTTTTGTTTTCGCCGGACTTATGGGGAGTTGCATGTCTTGTAGTAGTATCGTAATTATGAATTTTATAAAAAACAATCTCGTTTTTTATACCATTTTTTTGTCTATATGGTATAATTAGATTAGTCCAAACGATGCGGAGGGGTGATAGATTGATCGAAGCAATCGCCCGAATCGGAAAGATGGTGCTCGAGAAGCAAGGAGAAGTGTCGGTCATTGATCAGCTGGTTGAGAATCCAGGTTATCCTTCTTGTGTGCTCATTTCATTGCGTGTGGATGGTGAGGGAAACGCTGTCTGGGAAGGATGCGAGGTTGAGGAATGCGGAAGTGATTATAAGAAATATTTGTTTCGTTCCGGATCAACGCGCGGAATCAATTATTCTCCGACAGCGAGAATTACGACGATCGAAAATACATATGATCAAAAAGTTCTCGGATGGTTTCGCAAAGTGAATCGGGTGATGGATGACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 20129-23494 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNS01000095.1 Geobacillus stearothermophilus strain A1 contig_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 20129 30 100.0 39 .............................. TCCTCTGGACTTAGTCGCTGGGGGTCTAAATTTTTTAGG 20198 30 100.0 38 .............................. AGTCTATTTGTCTAGCATACTTTTTCGTTTTTGTCAAT 20266 30 100.0 38 .............................. CAGAATACCAAATCACTCTGTATATAAAGAACAGCTAA 20334 30 100.0 35 .............................. CTGCCGATCATAATCATAATCGCGCCGCCGGTCAT 20399 30 100.0 36 .............................. TCGACCTACTTAGACCATTTTCCCCGCCCTTTGTAC 20465 30 100.0 36 .............................. CTCGTTGAATGTGTCCATTGCCCACATGACGTAAGA 20531 30 100.0 38 .............................. TAGCGGGCCCTCGCGTTTTTGAGGTGTTTTTAAATGGC 20599 30 100.0 37 .............................. TTCTGTAGATTCATTTTGACCATAACCCGCAGGCAGT 20666 30 100.0 35 .............................. ATATTTCGAAATCCAGATTTCGCTTTTCACTACTC 20731 30 100.0 35 .............................. CAAGTTTACGGAAGAGCAAAGGAAGCGTGTTTCTG 20796 30 100.0 35 .............................. AGCTGAGTGTCAGCGAACTGGGAGTTGAACACGTC 20861 30 100.0 36 .............................. TTCCATGATTCAAAATGCTGGCATCGGCTATATCTT 20927 30 100.0 37 .............................. CTGCATTTTTGGGCCGTCGTCGAATCACTGCTCCGGC 20994 30 100.0 41 .............................. ACGGTAAAAAGCAATTCGTTTTGCCGCTTTCTTTCCGGCTT 21065 30 100.0 39 .............................. AACGCTCGTCTTGGATGGAATAGTTCGTTTCCGTCATCG 21134 30 100.0 34 .............................. TGGGTGCGCAAGGTGTTATCCGTCTGTACCGCGA 21198 30 100.0 36 .............................. GGAGTGAGCAACGCTCACCGAAGAGCAAGATAGAAA 21264 30 100.0 37 .............................. GAATGGAATCGCCCCATCTTCCATCATCGGTGGTACA 21331 30 100.0 37 .............................. AAGGCTACAACAATATATGAAAGCGATACACCATTGT 21398 30 100.0 35 .............................. AGTATCTGTATCGTCTCCTGCGTCGCCACGTACGC 21463 30 100.0 36 .............................. ATCAATCGCCTGAGCAAATCGCCATTTCCGCATCCA 21529 30 100.0 36 .............................. TTCATAACCATACCTCCTACATTTTGTTTTTGTTGC 21595 30 100.0 36 .............................. ACAGAACAGACGAGAAAGGGCATCAAGAAGTACGGC 21661 30 100.0 36 .............................. CCTTGCTTCGGCTTCTGATGATGTAGCGGAATTCAT 21727 30 100.0 37 .............................. CTTTGGCGTTTCTTCTCTACCTTCATGAAAACATACC 21794 30 100.0 38 .............................. CCTAGGAAAAAACGGAGTTTCGCAAAGTACATTTTTAG 21862 30 100.0 39 .............................. ATATAAGTATGGTCATGATAGACTCTTGCATACTCGCTG 21931 30 100.0 37 .............................. GAAAAATTTCTTGAGTTGCTGGAAAGAAGGAGTGATA 21998 30 100.0 35 .............................. TATATCAAAGAAATCTTCTCGCTTCACTGAATACC 22063 30 100.0 36 .............................. CGATGATGTTCTTCACACAACGGCGCAAGGTTTCTC 22129 30 100.0 38 .............................. TCAATTGCAGACATAAAAAATCTATGCTAGACTTGGAA 22197 30 100.0 36 .............................. GCACGCCGCGCAATTGGAAAATTCAACGTAACCGAA 22263 30 100.0 37 .............................. GCAGTCACACCTGCCACCTTCACCACAGGCACTGATG 22330 30 100.0 35 .............................. AGATCTGTGAAACCTGTGCCAGCGGAGAGAGAGCT 22395 30 100.0 38 .............................. TGGTCCCGTAAAAACGGGACAATGCCGCGTGGGAACAC 22463 30 100.0 35 .............................. ATCCCGTTCCAAAGGTAACCAAACAACGAAAAGAA 22528 30 100.0 35 .............................. ACACCTCGCTCGTGTGGTGCCGTGGACGAAGCACC 22593 30 100.0 36 .............................. AAATCCAACGTCTTGCTCCTCCTTGATGCAAATTGC 22659 30 100.0 37 .............................. AGTTCTTTGGTGTGCCAACAGACGAAGATGACCCGGA 22726 30 100.0 38 .............................. CTCGATGCAAACGGAAATGTGTTGGACGAGCGAACCGA 22794 30 100.0 41 .............................. CCAAAGGAAAAGGCTGGCATTTGATGACGAATGCGGAGTGG 22865 30 100.0 35 .............................. TAACCTAAAGAGAAAGCGTAAGCGATGGCTTGTAG 22930 30 100.0 37 .............................. CCTGATGGCTTCGCAGCAAGCTGTGAATGGCCTGACC 22997 30 100.0 40 .............................. CGTCGCGCGGCAATGACTGAATACGAACAATCTCGTCCGG 23067 30 100.0 37 .............................. ATGTACAGAATGTCATTTTTTGATGTTTGTAAAATTA 23134 30 100.0 36 .............................. ACCGCTATCGAAGCCTTGTATCAACCTTTCTGTGAT 23200 30 100.0 35 .............................. CGTACTGATTATTCCAACATTGGCGGAGGATTTGA 23265 30 100.0 38 .............................. GAAGTCACACCACCAACGTGCGGCTATCGGTTCGACGC 23333 30 100.0 36 .............................. GAGGGCTTTTTTCTTCCCGCACCGGGCCGCCAACGA 23399 30 100.0 36 .............................. AAAAATGTAGTGGAAAGGAAAATTTTTTCAAGCTAC 23465 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 51 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGACGGAAGAAAGAAAACGCAATTTTTTGACCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCGTACTACGGCGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGGTTCACGTTCATCATCGTCATCGTGTGGTGACAATGTTCAAGAATATGTATATTACAGGGTGGCTTGGCTATTACCGCCTCTGTTCTTCACCAGAACAGTTGACATTTTTATATCATGTCGGTCTAGGTGGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTTAAAAGCGAATAAACGGGTCAAGAGATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAAGCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CAATTTGATTTTTATAACCGTACAAACTTATATATGTTATCACGAGTGTTGATTATCCAAAATTAGACATACGCCTTCCATAAATTTGGGCATACTCAAACAAAGCAGCGGCCATCCCGGATTTCCAATCGAGAGGAAGCTGCCCAGAGAAAAAACGGCGAACGAACGAAATGAAGGAAAGAGAGACGTTCGTCTGTTTTTTGGTTTGATCATACAGCCATCGCAGCAACACATACGCGATGAACGCCGCAAACAGTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4587-231 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNS01000172.1 Geobacillus stearothermophilus strain A1 contig_171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4586 30 100.0 35 .............................. ATCGTTTCCATTTTCATAAAAATCATCCTCCCTAG 4521 30 100.0 36 .............................. GGAGTTTGCCTGACAAGATTCCGATTGTTATCCCGA 4455 30 100.0 35 .............................. CTATACCAGTCTCTATATCCGATATCCCGGATATT 4390 30 100.0 39 .............................. TAACCAAGTGTCCACGGCATCGCGATCTCGTCGTCGAAC 4321 30 100.0 36 .............................. GGATTTTATTAGAGAAGGTTTGCCTCGATTGACGGA 4255 30 100.0 36 .............................. CTAGATAGATATAAGACAGAAATATCGAGGCTCGGC 4189 30 100.0 36 .............................. GTTTTTCATAGCGATCCGTCTTTTTCGACGGTTCGA 4123 30 100.0 36 .............................. ACATAATGATTCCTCCTTACCACACGACCGGATGGA 4057 30 100.0 39 .............................. CCGGCGACAAAGTATAGCGGCCGCGTTTTTCCGAAAAAG 3988 30 100.0 37 .............................. AAAGAAATGGCCGATAGGATTACCGAGTATGCAAAGA 3921 30 100.0 35 .............................. TCCGGAAGCCCCTCAACATTCGGAGCCGGATCAAT 3856 30 100.0 36 .............................. ACAGCGCCTGCAAGACAAGCGTCGACACGACATAGA 3790 30 100.0 36 .............................. TATTTCATTCGGGAAACCAAGGCGTTCCCAAAGAGC 3724 30 100.0 35 .............................. ATATAAACATCAAAAAAAAAATTTGCGCCCTATAG 3659 30 100.0 38 .............................. AAAAATGTAGTGGAAAAGGAAAATTTTTCAAGCCACAA 3591 30 100.0 37 .............................. CGAACCTCATCATTTCTCAACTCCTTTTTTGTAGTCT 3524 30 100.0 35 .............................. TCAGCTAAATATTGTACAGCATCCGACAGCATCAC 3459 30 100.0 36 .............................. GTAGTAGAAGCGAAAAAGTATTTTGAAGTTGACGCA 3393 30 100.0 37 .............................. TCCCCGTTCCGAACATCAAAAAAATCGCGCCAATCCG 3326 30 100.0 35 .............................. AGGAATAGGATTCCCTTCCACGTAATAAACATCCG 3261 30 100.0 37 .............................. CACCTCCGGTATTTCAGTATGATCGCAACGGCATCAA 3194 30 100.0 38 .............................. GCGGTAGGGAAATGCGGTATAGATAGCAAGAATATGGG 3126 30 100.0 37 .............................. TATCACGCTTTTGAAGAAAGAACGGAAAACGACTAGA 3059 30 100.0 37 .............................. GTTTGTGATGATGCCAACTATACGGTTGACGTTATTG 2992 30 100.0 35 .............................. AATAAATCATCAGGACGATTCAAAGGCTCAACACC 2927 30 100.0 35 .............................. ACGTACGTGCCTTTTGCTATTGATTGCTCAAGTCC 2862 30 100.0 36 .............................. CATCGCTAGTTGAATACAATAGCGGATTGCTTCGGA 2796 30 100.0 37 .............................. ATTGCGGAGAAATCGACAAAGAAGTCGAAACATGTCC 2729 30 100.0 39 .............................. ACTTGTAACCTAATTTCGTAAAGATTTCCGACCACACCG 2660 30 100.0 35 .............................. ATTCCTGCCATTTTCACTAAATGGTACAAAACGGT 2595 30 100.0 36 .............................. CTGCAACAGGCATAGCAGAACGGGCAACCTGTCTAG 2529 30 100.0 40 .............................. AATCATCAAGACTAAAGATCCTCATCGTGTCATAGCGATT 2459 30 100.0 35 .............................. TAGAAGAGTCATAATCGCTACGCTCATCAGCTGCA 2394 30 100.0 39 .............................. GCTGTACGGAACTGACTAGCAGAACGAAGTGCACGTGCA 2325 30 100.0 37 .............................. GCTGGAACGTCGATGCAAAATGGAAACGAGTTGCCGC 2258 30 100.0 37 .............................. CTACTTGAACAAAAAGGGGGCGGAAATGGTAGGTGGA 2191 30 100.0 37 .............................. CTCTTGCAGATCATCATCATCTAACGGCGACACATAA 2124 30 100.0 37 .............................. GATAATCTGACCAATAAACCATTTGACCCCGAATTCC 2057 30 100.0 37 .............................. CCACTTGTTGAATATTCAGCAAAAGATTGCAGACCGA 1990 30 100.0 36 .............................. TAGTACTACAATTTTATCTAGATGTCAACTACTTTT 1924 30 100.0 39 .............................. CGCATAATTGAACACTCTCCTTTGTGATTAATTTTTCGT 1855 30 100.0 37 .............................. TCCAGCATGACAACCACTGTCCCGCTGGATTCACGAA 1788 30 100.0 36 .............................. GCTACCTGCTTCATCTTGCCCGTGGAGTGTTCGATC 1722 30 100.0 37 .............................. CCGGAACAGCTTACTTAAAACGCCAAGGAGTGGGCGA 1655 30 100.0 39 .............................. GGTAGAATCACAATTTCGGTTCTCCATATACTTCCCGAA 1586 30 100.0 37 .............................. TCCAGCATGACAACCACTGTCCCGCTGGATTCACGAA 1519 30 100.0 37 .............................. GCATTTTTGTTACCATTTGAATTTGATTCATCATGAT 1452 30 100.0 38 .............................. TCTCTTTTCAAAGTGACGATGTTCATTTATGCGTACAA 1384 30 100.0 38 .............................. CCCAATGATCGTAAGGAAAAAGCAACGCCTTTGCGTTC 1316 30 100.0 36 .............................. CCATGATGGTGATGATGCAGCGATTGCAAAATTTCC 1250 30 100.0 36 .............................. ATACGCTCGAGCAATGTTGCTTGGTCTGTTATTTCC 1184 30 100.0 36 .............................. GATGCCTCGATCGGTACGCTGATACATCTTTAGAGG 1118 30 100.0 35 .............................. CGTTGCAAGTGGAGATTGGGGAGCTCGCAAATTGC 1053 30 100.0 37 .............................. ACGGCCGCATACGGCAATATGCACGACTTGCGGAAAG 986 30 100.0 35 .............................. TTGTATGACACACCAAAACTACAAGTAACTAGGGA 921 30 100.0 37 .............................. AGCTACCTAGTTTTCAAGGAGGTGTAATGATGTACAT 854 30 100.0 36 .............................. TTCGGCTTTTCGGAGTGCATATATATCACTTGATGC 788 30 100.0 39 .............................. TTTCGACGTGAAGATGGACAAGCCGTCTACCGCTATGAG 719 30 100.0 35 .............................. TCCGGCTCCGCACCAAATATATTCGGCGCGGCGAC 654 30 100.0 37 .............................. AAGATTAAGTGTAAGTATTCACGTTTTGGTTTCTCGA 587 30 100.0 36 .............................. CCATCTCCTTATCTCAATATCATATTACATCAGGAA 521 30 100.0 35 .............................. TCGTGAATTGTACAAGATGATTCCAGCGCTTCGCA 456 30 100.0 35 .............................. ATGCCACACCAGATGAAATCAGCTTTCCGGTTCTC 391 30 100.0 35 .............................. TTGGTAAATGTATGAAGTAACTCCACACCATACAC 326 30 100.0 36 .............................. CGTTCATAATTCCCGCGACAAGGTCAGCTTGCAGGC 260 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 66 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCATGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGG # Right flank : CTAATGAAGCTAAAGGAGCATTCCCGTTAGGAGCTTTTCCGGGGACTTGATCAAAAAAAGCCCTCTTGGTATGATGCAGGGGTGTCAAACAATACCTACCATCATGCCAAGGAGGACTTCAGATGAATTGTACACAAAACTATAAAATTGATCAAGTTACGGAACAAACGCTTGTCGTGGGCATCGATATCGCGAAACGAACCCACTACGCCTGCTTCGTGGATGACCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5716-4885 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNS01000148.1 Geobacillus stearothermophilus strain A1 contig_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 5715 38 100.0 36 ...................................... TGCTTATGCTGATTGTATACGGTCCGAAAATCTATT 5641 38 100.0 34 ...................................... TCGCTGTACTAGATGTAATTACTGCATTCAAAGC 5569 38 100.0 35 ...................................... TCAACAGCACGGTTGTATTCTTCCGTTAGCTGCTT 5496 38 100.0 33 ...................................... TGCTCTGTGATCCCCATGTCCAAGAGCTTTCGG 5425 38 100.0 35 ...................................... AGATCCGTATGACAGGAAGCGCAAAAACAGTCACC 5352 38 100.0 32 ...................................... TCAATTTTTCCAATTTTAAAGTTATATTGCGC 5282 38 100.0 35 ...................................... ACAGTTCGAACAGCTCAAAAATCAGATGGCCCAGC 5209 38 100.0 34 ...................................... ATCCGATTGTCATTGTTTATCCCCTTCCTTGTCC 5137 38 100.0 34 ...................................... TCGTCCAACGTTCTAAAGGATTAGGCGAAAATAC 5065 38 97.4 33 .....................................C CGCTCGCTTGCCGAGCTGTCCGAACCGTTGGCC 4994 38 100.0 34 ...................................... CAAGGAAATTTGCGCTATTATCGACGACGTGTCC 4922 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 12 38 99.8 34 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAACA # Left flank : TGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGTCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTTAGTCAAGCGCAGCTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAAGAAGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGAGGGAAAATGGATCTGTGATCATTATGACTTTGCCCCAAACAGAATGCGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : AATTTGGTCAGGCCAAGCAGGAATTTGCCGCTTGCTGTCGAATTCATGTTCACGAAAATTGTTGCTTCACCTTTTCCACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCGAAGACGCCGTCGAGCCGCTGTTCGAGGACGGCGATTCCTTCCCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGCGTCGGGAGCGTGTACAAGTTTTGCTTCATCAATTCCGCGAAGCCGATGATCATGTCGGTCACCAGCATCGTCGCCTGTTCTTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGTTGCAGCAAATAGCTGAAAAACGCCGGACCGCAGCTGGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCAGCAGTCGGCCGAACAGCGTGATCCGATTGTGATGAGTATGCTGCCGGAGAGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //