Array 1 35096-36956 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHP010000024.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
35096 29 100.0 32 ............................. CGACGTTTTCCAATATCACCCAACAATCAATT
35157 29 100.0 32 ............................. CTTCTGCATCTCGTCAACCTCCCTAAATGCCT
35218 29 96.6 32 ............................A TATCCATCATTCTGCGCGTTGCCTCGATGCGC
35279 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA
35340 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT
35401 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG
35462 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT
35523 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCGGCCTGTC
35584 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA
35645 29 100.0 32 ............................. CATTTTTGCGTGACGAGCTGCGCCGCGTTCTG
35706 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG
35767 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC
35829 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA
35890 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT
35951 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC
36012 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT
36073 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC
36134 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC
36195 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG
36256 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT
36317 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT
36378 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT
36440 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC
36501 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA
36562 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT
36623 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC
36684 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
36745 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC
36806 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG
36867 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
36928 29 93.1 0 .A..........................A |
========== ====== ====== ====== ============================= ================================= ==================
31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT
# Questionable array : NO Score: 6.22
# Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 161642-161439 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHP010000004.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
161641 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC
161580 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC
161520 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT
161464 26 85.7 0 ................A...A.-.-... |
========== ====== ====== ====== ============================ ================================= ==================
4 28 96.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA
# Right flank : TGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCACTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGAT
# Questionable array : NO Score: 5.68
# Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 1 60027-59205 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHP010000021.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
60026 29 100.0 32 ............................. TCGGGGATCGTAGAGTTTTTTACCCCAAACCT
59965 29 100.0 32 ............................. CGTATAAAATCTATGCGTTTTTTACGCCATTA
59904 29 100.0 32 ............................. CACCAGGGCAAAACATGGACAGCATCGGCGAA
59843 29 100.0 32 ............................. GAGCTGCGGAAATACGCGCGGGGGGCGAAAAA
59782 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT
59721 29 100.0 32 ............................. GGCGGGCCACGCTCCATGAGTTAAGGACTGTC
59660 29 100.0 32 ............................. CGAGCGCAACACGGCCATATTATTACCCCATT
59599 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA
59538 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC
59477 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG
59416 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC
59355 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA
59294 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT
59233 29 96.6 0 .T........................... |
========== ====== ====== ====== ============================= ================================ ==================
14 29 97.8 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG
# Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA
# Questionable array : NO Score: 6.15
# Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG
# Alternate repeat : GTTCCCCGCGCCAGCGGGGATAAACCG
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.51 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//