Array 1 39659-43685 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAD01000051.1 Fischerella thermalis WC441 NODE_139_length_72870_cov_18.285810, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 39659 37 100.0 35 ..................................... TATTCTCCGACCAGAGAGAACTGCACAGATTTTCC 39731 37 100.0 34 ..................................... CGCTCATCGCCGCAACGACAACTGGGACAAACCG 39802 37 100.0 36 ..................................... CAGTGGTTTCCAAAAGCATCGGGAAGCCCTCCTTAC 39875 37 100.0 36 ..................................... AGCCAAGTTCCGGACTTGGCTGGCGTGGCAATGAGC 39948 37 100.0 35 ..................................... GGGGTAGCGATCGCCCTCCGGCACCCCGTGCGAGA 40020 37 100.0 34 ..................................... TCCGATAACTCTTTTGCACAAGCCTCAAAACCTT 40091 37 100.0 33 ..................................... CCTTCGATCCCAGAAATGCCTTCGATGTCGATT 40161 37 100.0 40 ..................................... TCTTGCCGCGATCGGGCTGGGACTTGGCAACGCGGGCAGG 40238 37 100.0 33 ..................................... TTAGACAGCTCTTTTAAAAAGCCGGAAACCCTT 40308 37 100.0 35 ..................................... CAAATCCGGGATGATTTCTTGGGAGAGATTCTTGA 40380 37 100.0 35 ..................................... TGGTAGTGCAACGATCCCGTAACGCCATATATAGA 40452 37 100.0 40 ..................................... ATTAGCCCTAAACTCTGCCCAGAACCTATCATCTGCACCC 40529 37 100.0 41 ..................................... CTCGCTCCTTGCTATGAAGGGCGGAGGTTCCGACAATTCCC 40607 37 100.0 36 ..................................... TAGCTCCATGGGAGAGACCCAGACCTGAGATGCAGC 40680 37 100.0 32 ..................................... GGAGATCTTCGCAGCATACGATCGCGACACAG 40749 37 100.0 34 ..................................... GGAGTCGGTCAGTTGGATCCCCAAATCCCCAGCT 40820 37 100.0 42 ..................................... CAGCAGATGCCCCGCTGCCCGGCGGATGCGCTTTGCGATCAG 40899 37 100.0 36 ..................................... CTGGTAGCCATCCTCCGAGAATTCTGAAATAAAATT 40972 37 100.0 34 ..................................... AAGCAGGTATTTGAAACCCCTAATAGGATTACCG 41043 37 100.0 32 ..................................... CATGCGGGTGCTTAGGTCTGGCAGTGGGCTAA 41112 37 100.0 44 ..................................... GCTCCTCCATCGCTCGCAGCACGTTCGCCTCGACGTAATCGCGA 41193 37 100.0 37 ..................................... GGTGGAAGGGGTAGTGGTGGAGAGATCCACCTACTGG 41267 37 100.0 34 ..................................... TGCGGTGGAGGAGTCTGCGGTGGAGATGCCTGCG 41338 37 100.0 36 ..................................... GCATTGACAAATAGGCAGCCAGAGATCTCGCTACAG 41411 37 100.0 38 ..................................... GGCGACAGTTACTTGATCTCCTTGTGTGTAAATCATCA 41486 37 100.0 38 ..................................... CCTTATCCACTTGATTATCGCCACGACTGTCCGGGTTG 41561 37 100.0 34 ..................................... AGATGAGTGCTACCGGATAGTGCTAGAGAATCTC 41632 37 100.0 36 ..................................... GATTCGATTAGCATTGTGTACTCCTTGGTCTATCAC 41705 37 100.0 34 ..................................... GCGAAGGAAGGGTGGCAATTTTCCTATGTGAAGC 41776 37 100.0 34 ..................................... CTCTCTCAGCTAGCGCCTCTTCTCCATCTTCTAA 41847 37 100.0 36 ..................................... CGAACTTTCTCTCCTCTTTTTCATCTGCTATGATGA 41920 37 100.0 33 ..................................... TTGCTTTGCTACACAAAACCCGAAACGCAAAGA 41990 37 100.0 34 ..................................... GTTATAGTGGTAGTGTAGAGATAAGAGGTTAAGG 42061 37 100.0 33 ..................................... TTGAGGGGTATGACCTAGACATATCGCCAGATA 42131 37 100.0 34 ..................................... TAAGTGGCAAACGCGAGAGCAGTATTTATCCTGG 42202 37 100.0 40 ..................................... GGGGTAAGGATGTACGCGAAGCAATCGACTGGATCTTCGA 42279 37 100.0 35 ..................................... TTGATATATCTTGTAGCGAGAATTGATTTTGTAGT 42351 37 100.0 40 ..................................... GGAAGAATACTGCACAGATTTCTCCATATATATATAGGAA 42428 37 100.0 33 ..................................... GAGGTATCTTTTTGCCAAATTACATTTCTAGCC 42498 37 100.0 34 ..................................... AAGTAGTGAAAGCGTTTAAAGGCAGGTCATCAAG 42569 37 100.0 38 ..................................... GTGCATCATCGTGGCACCTTTGATTAAAAAAGTTTTCC 42644 37 100.0 34 ..................................... AGCCAGCACCTGATTCTTCCCAAATCGGGAAGAT 42715 37 100.0 35 ..................................... TAACAACAACGAAGAAACCGCATCCAACACCCCAG 42787 37 100.0 39 ..................................... GCCGGTATATAATTCTCCCAGCGGTCTCCCTGTTTGTTG 42863 37 100.0 34 ..................................... AGAATCTCTGGCACCCGATGGATTTAGCGAGTGG 42934 37 100.0 33 ..................................... TAATACATCATTCAGTGAACCACCTTTAAGAAT 43004 37 100.0 34 ..................................... GCTACAATGTTTGCTGCCTTTTCTGCTAGTTCCC 43075 37 100.0 35 ..................................... AAAGTATCAGAGCCAAAACAAATGTAAACTGTACG 43147 37 100.0 34 ..................................... ATGTTAGATGACATCCGCACATCTAGACCAAACA 43218 37 100.0 33 ..................................... AGTGCCGTACCATGACTTTAAAAAATTCAAAGC 43288 37 100.0 37 ..................................... AAGAGAATTGTGTGCGAACCTTAATATTCTTCCATCT 43362 37 100.0 34 ..................................... TGCTTAGGAGCAAAGTTTGGGGAGAGTGTTTCTG 43433 37 100.0 33 ..................................... AATATCATGCCTGGGATGTATCGCGATCGCGTG 43503 37 100.0 36 ..................................... TTCGTATCCCAAGATGCATTGTGTAACTCAAGTTTA 43576 37 100.0 36 ..................................... ATGGATCCACAGCCATACAATCCACCAACAATCGAA 43649 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 56 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCC # Right flank : CAAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTACATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCGCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCTATTTCTTCCGCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 84897-90204 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAD01000082.1 Fischerella thermalis WC441 NODE_300_length_289079_cov_19.037741, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 84897 37 97.3 34 ....................................A CACTATCGAATTCGGTCGGGCTGGGCGCGATCGC 84968 37 97.3 38 ....................................A CCTTCATGGGGCGACTCCATTTTAGACTTACGGCACCA 85043 37 97.3 37 ....................................A CTTCAAGGTAGGCGATCGCCTCCTTGTATGTGCCAAA 85117 37 97.3 34 ....................................A TCACCATCGAATGCTCCCAGCAAAATGGTGATGG 85188 37 100.0 36 ..................................... GAAATCACCATCTCTGAAGCCGGGTATGAAACCCGG 85261 37 100.0 34 ..................................... ATATTTCATTTCTCTCCTGGTGTGAGTGTACATA 85332 37 100.0 47 ..................................... CAGCGGGAACATCCGCTCCCACGGGCAGCCTTCCTCGAAGATTTCAT 85416 37 100.0 40 ..................................... GTAGATGAGATGGCTCTCACCATCGACATCGACTTCCCAA 85493 37 100.0 36 ..................................... CGGGCATTCACCAACAAGCACGACGGACACATACTC 85566 37 100.0 39 ..................................... AAATTAGCCTTCGATCTGGAAGAACTCTATACAGAATGG 85642 37 100.0 37 ..................................... GGGCAGCTTTCGCGGATTAAGCGTGGAGACCAGGCGC 85716 37 100.0 43 ..................................... GGCTGCCGAAATACACTGCCATTCACCCACATACCCGATTTTG 85796 37 100.0 34 ..................................... ATCGCCACTCACGGCATCGCCCCCATCCTCGCAT 85867 37 100.0 33 ..................................... GCTTTTGGCGGGCGATCGCGCCTCGGATGGATA 85937 37 100.0 35 ..................................... AAGGAAGATAGCGCGCCCATGTACACCGATCCCAT 86009 37 100.0 35 ..................................... CGAGCCAAAGCCACTGGGATCGATGCCGAGGTAAA 86081 37 100.0 38 ..................................... GTCCTTCCTTACCAGGGATCCTTTTGTGTAGTCGGCTT 86156 37 100.0 35 ..................................... TATCATCTCGATGGGGAGTAGCAAGTCCCATATCG 86228 37 100.0 32 ..................................... TTCGCTTCCCCCTTTTCTGTGTTATATATAAC 86297 37 100.0 39 ..................................... CGAGATGAAATCATCGAGACTGGTTTCGCGAGATGCTGC 86373 37 100.0 33 ..................................... GCCGTGGATGGGCACATCAGGGAAGTGCGATCG 86443 37 100.0 37 ..................................... CTTGATAACCACCACTTTACCCATCAGGGCTTGGTAC 86517 37 100.0 33 ..................................... CTTCTTACAGACTGCACACTGCCCTAGTTGGTA 86587 37 100.0 35 ..................................... CCCGACGATCGCTAGCCTGTGCCCATTATCCTTGG 86659 37 100.0 34 ..................................... CTCTTATTTGTTTCTAGGTCATACAGATATGGGT 86730 37 100.0 35 ..................................... GACATCTACTGTGGGTAGATCTTCCAAGCCGGATG 86802 37 100.0 35 ..................................... TTGTAATAACCCTTACTCTCCACTAATGGCATTCC 86874 37 100.0 38 ..................................... GATGATGCTTTAAATTCTGCTAGGCAGATAGCCAAAAG 86949 37 100.0 37 ..................................... TTTTACTACCCCCAATAGAGAAATCGACTCGATCTTT 87023 37 100.0 33 ..................................... GCGCAATGATAGAAGTTAACCGAATTATCTCGG 87093 37 100.0 39 ..................................... TGGACTGGCAGGTACGGTGATTGGTTCGGTATGCTATGC 87169 37 100.0 36 ..................................... TTCATATAAGGGCAAGCTTGGAGACGTGATAGTAGT 87242 37 100.0 34 ..................................... AATCTCAGCAATGGAGTGGGGACATCGACTCCAA 87313 37 100.0 35 ..................................... GGAGTGCGAAAGTAAAAGAAATAAAGAAGAAATAG 87385 37 100.0 35 ..................................... AAGCTTCTAATTCATGCGGAAGTATAGGGGAATTA 87457 37 100.0 34 ..................................... CTACTGCATTGTATTTTTCTTTGTTAGTTGTACT 87528 37 100.0 34 ..................................... CCGGATCCTGAGCCTGGGGATTGCGCGATCGCAG 87599 37 100.0 35 ..................................... ATCGGCCCGCCAAAAGCATAAGAATCCTGGAAAAG 87671 37 100.0 40 ..................................... AATATCTATTGAATGAACTTATTTTCACGACGTATCGGGA 87748 37 100.0 33 ..................................... GCTCTCTTGCCGATGATTTTTTCTATTGCTCTG 87818 37 100.0 35 ..................................... ATTCAACAAGAAGAGGCAGATAAATTACGCCTAGA 87890 37 100.0 42 ..................................... CCATCGTAAGATTTTTTGAATCTTTGTTGAGAGCAAGTATGG 87969 37 100.0 34 ..................................... GAGGAAGATTCTCAGCACTTCTATTCTCAACTCT 88040 37 100.0 42 ..................................... TATTCTATGGATATTTTTAAAGCGTGTATGCGCCCCCATAAA 88119 37 100.0 35 ..................................... TGCTTTGAAGTATGCATCCAATTGGCGGATCAATT 88191 37 100.0 37 ..................................... AGGATCTTTAGCTGGTTCTCATCTCTCGTTAGGAACT 88265 37 100.0 35 ..................................... CTATAATTCCCAGAAATCAAGGGGATCCTTTTAGG 88337 37 100.0 35 ..................................... CTAGGGCTGACTTGGCGGTCAGAGCCGCTGCTGTG 88409 37 100.0 37 ..................................... AATGTCGATTATAGGTATCAAATCGACATTACTAGGA 88483 37 100.0 38 ..................................... GCAGCAATTGGCTAGCTTTTGTGCTTCAGTCCGGTGAG 88558 37 100.0 34 ..................................... AATGCCAGCGTAAGGTGCGGTATTGCTGAGGATG 88629 37 100.0 33 ..................................... CTGCCCAACGAGGAGAAACAGAACCTCGTAAGT 88699 37 100.0 35 ..................................... GTCGTGATGATAAAACCAAAACAACTACCTAACAA 88771 37 100.0 35 ..................................... CTTGGATAGCCGTGACACTACTGTTTCCTCCCGAT 88843 37 100.0 34 ..................................... CTTTTTTGTAATTAATCGGAGCGAGCTACGAGCT 88914 37 100.0 34 ..................................... GAACATCAATGGGCAACCTGGCATGGTTGCGATC 88985 37 100.0 38 ..................................... TTCTTCAAGGAGGAAGACACTTACTGTACTCCTAGCGG 89060 37 100.0 33 ..................................... GACTGACAGCCTCGCGCTCCTTTTTATGAGTTG 89130 37 100.0 34 ..................................... CGGCGACTTTAGTAGCGACAGCTGCACATCTGTA 89201 37 100.0 35 ..................................... AAAATTGAACATAGACATAACAACTCTCCTTTTTT 89273 37 100.0 33 ..................................... ATCGCGCATGACCAGGGAAAGCTGCATCGAGCA 89343 37 100.0 36 ..................................... CATTGGCTAAGAAAACGCCTCACTGAAGCGAGGGTG 89416 37 100.0 40 ..................................... TTACTCTAGCAAATGCGCTAGTACAAGCGATCGCTGCCAA 89493 37 100.0 35 ..................................... GAGGATGACGCTGACCTCATCCTTGACTCCGATGA 89565 37 100.0 43 ..................................... TACTTCCATCCAATCAAAATATTGCACTTTTCTTATAAGCCAG 89645 37 100.0 34 ..................................... ATAGCGTGACGACACGCTATAAAGATGCCCTTTA 89716 37 100.0 35 ..................................... TCTGTTATGGGCGATCGCGCTTCCAATTATTCCGG 89788 37 100.0 41 ..................................... TTTTTATTAACGAAGGACGTCTTGTTCGCAACCATATTAAA 89866 37 100.0 34 ..................................... GAATTGTGATCAGATCGAGATACTCCTCGATCTG 89937 37 100.0 35 ..................................... TTCGAGTTTACTTGCCACCGCAGTTACGTTTTTTT 90009 37 86.5 119 .........................G.C.T.....TT TGGTCATGAATTATGTGTGCATACATTTTTGTAGTTCGATGCCAAATCATTGTAGAGACGTAGCAATGCTACGTCTCTACGTCTGGTCATACCCGTGAATTGTAAATTCATATCTTGAT GC [90040] 90167 37 81.1 0 TCA.....CC....A.....T................ | G [90172] ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 72 37 99.4 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : AAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : CTTAATTGCAATAATGTTTGAGATATAGGATTCCCAAATCATCCGTAAGAGACAAGCTCCCCGACTTTTCCAAAAATTCGGGGATTTTGCCTCTAATCAATTCAATGACTTAGGAATGTGATATTGAAAATTTCTAACTCAATTGTGCTACAAGTTGATTTTCCAATAGAGTTTCATTTGTGAGTAAATCCTCAACGGTGATTCGCAAAAAACGCTGTTCATCAACTAAAAACAGGATTTTAATTCGATCGCTTCCGGGAAAACCTGGTGGTGTAAGTTTAGCAATTGTCCTCGCCCCATCTCTATCATTAAGGGGTTTGACAGTGGTGACATCGTTATCAAGACGACGGGTAATCATGCGATCGCCATCAAAATAAACTTCTGTACCACCTGTGTCTGACCCCAATTCACCCATAATTAACTCAATGCTGGGCTGATTTTCTACAGAAGCACCCAAAACTAACTGTACTGGCTGAGTCATGGGATAAGGTTGCCCCTCT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 48989-48808 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAD01000021.1 Fischerella thermalis WC441 NODE_53_length_68481_cov_18.107534, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 48988 36 100.0 37 .................................... AAACCATCAACGACGGCAACACACCAAACGAAACCAC 48915 36 100.0 36 .................................... TCTGCGTGGGCCATGCTTTTGATTGGCTCCGCCTGT 48843 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 37 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TGTAATATCTAATTCTCGGCTATATCTAAACAATAGTTCTGGCGAACAGTTACTAAAGAACAGCTAGGATTAGCATCACCCTGCTCTGGAATTCTACTCATTCCCTGTAAGCTTTGCGGCTTTGCAATAAAGAAGCCTACAAAATAATTTTGTACTGTCATTAGTTAATTTAAAATGCGGATGAAAGGACTTGAACCTTCACGCCTCGCGGCACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCATCAGTTCCTTATCATAGCATAAAAGTTGTCTAGAGCAATAATTTTTACGAATTAAGAGCAACTACCGAAGTTCAGCCCAAATTCTGCAAATGCCTATTTTTGTGTTGTGAACTTCGGTTGTTTAGTACATAAGGGTTTTAGGCTTTTTGTTTGGAGGAATTGAGATGTTTTTGTCTGTAAATTATCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATAGGACT # Right flank : TGAATGGAAACAATGGGAACCTAAATTACACCGACACGAGGTAATCGATGCTTGAATCCGCAGAGAATTTCCCAAGAAATTGTGTTTAGTTGATTTGCCCAATCATCAGCGGAGATTTGTTGTTTGCCATCTTGACCTAGTAGGGTGACTACCTCACCTTCTTGTATATCTGGTAAGGCACTGATATCTACCATCAGTTGATCCATTGTAATTGCGCCGATCTGTTGTACTCTTTGACCACGAATTAATACCTGCATTTTGTTGGAAAGATTGCGTGGAACACCATCGGCATAACCAATGCCAACAACAGCAATTCGCATTTCTTGCTTGGCAATAAATTGATGACTGTAACTCACACCAGTCCCAGCAGCAATGGTTTTGACTTGGGTGACTCTGGCCCTGACTTGCAAAACAGGTTTCAGGTTAATTTGCGATCGCAAATGTGTGGCTGGGTAAAGTCCGTAAATGAGTAAACCTGCACGCACCATATCATAGTGTAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 148158-154992 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAD01000101.1 Fischerella thermalis WC441 NODE_566_length_508181_cov_18.214323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 148158 37 100.0 36 ..................................... GCGATCGCTCGAATCTCCGATGGGTGCGATCGCAAA 148231 37 100.0 38 ..................................... TCAACATCTATAAGGAGGATGGGCTGAAACGCGAACTC 148306 37 100.0 32 ..................................... ATGCTCGACAACACTCTCCTCGACTAACTTCC 148375 37 100.0 35 ..................................... CTCCTGGCTCGGTGCCTGATGCCTTTCTGGATGTG 148447 37 100.0 33 ..................................... GTCTTTTCTTACCAGTGATCCTTTCGTGTAGTC 148517 37 100.0 37 ..................................... AAAAAAGTATCGGCGACAACAATGGACATGATAAGAC 148591 37 100.0 34 ..................................... TGCTTCTGTCCCTCGCGCTACTCTGGCTGCGACT 148662 37 100.0 34 ..................................... GAGCAGGATGTCTACGATCGGTGGGCTGGACTTC 148733 37 100.0 36 ..................................... AGCCTCGCCCCCATCGTGAGGGCTTGGGCTGGATTC 148806 37 100.0 38 ..................................... CAGAGAGAACATCTGCTCCCATGGACACCCCTCTTCAA 148881 37 100.0 32 ..................................... CAATACTCTCCGGACAGAGAATACTGCACAGA 148950 37 100.0 35 ..................................... ATTCACAGCGATCGCTGGCTGAGATCCACCATCGG 149022 37 100.0 32 ..................................... TTAGTAAGACCCACCTACAAGAGATGGCGGAA 149091 37 100.0 33 ..................................... TTCCCCATGGTTCACTTAGGGGGGAAGAGCCAT 149161 37 100.0 36 ..................................... GGATGAGGCTGGGCTTAATCTCGGCTTGAGCAGTTC 149234 37 100.0 39 ..................................... GGGATGTGATGCCTTTTCCTAGCCCAAAATCTCCTACGA 149310 37 100.0 34 ..................................... ACCCATAGACCATTTTACGTGGTTCACATCAGAC 149381 37 100.0 34 ..................................... TTGGGCATCTCTACATAACTCATGTAGTCAGCCA 149452 37 100.0 35 ..................................... ACTGGAACTAACAAGCTCCAAGTCTCTGTGTCATC 149524 37 100.0 35 ..................................... CAAACTACCTAAGCCCGCACAGGCACTCGACTGGA 149596 37 100.0 34 ..................................... GTATGCTAATGCTCGATAGAGGTTCATCTTGAGT 149667 37 100.0 38 ..................................... ATTCTGAGAGTTCCCGTTCCCAGAGACAAAACGTGGCA 149742 37 100.0 37 ..................................... CATACGCGAACCGTTGCGCCACAAACGATGCGATCGC 149816 37 100.0 36 ..................................... CTCCACAGAGCGCAGTACCCGCGGCGCTCTGCTGGG 149889 37 100.0 36 ..................................... TCCTTTCCCTTCCCCGACTTCGTTAGGAAGATGTCG 149962 37 100.0 32 ..................................... TCTTCTCCGATTCTGCTCGAAGACCCAAACCG 150031 37 100.0 35 ..................................... CTCTCTGGTCGGAGAATACTGCACAGATTTCTCCA 150103 37 100.0 36 ..................................... TTGATAACTCCATCAAACGACGGCTCTCCACTAGAG 150176 37 100.0 41 ..................................... GGCAAAGACCCGATGGAGAGGGGAGGCGGGAGAGCGGGCGG 150254 37 100.0 35 ..................................... TCCAGCAAGATTTCATCTTCGCTGGGAGCTGGGCA 150326 37 100.0 39 ..................................... TGCCAGCTTCTTCAGAAAAGTAAATAGCTTGCCAATAAA 150402 37 100.0 35 ..................................... AGGAGAACCAGCACCGGATTCTGCCCAAGTTGGGG 150474 37 100.0 36 ..................................... CAAGAACCAAATCCTCGCCCTTCTCTTGCCTCCCGG 150547 37 100.0 35 ..................................... CATCAGCGATCGCCCCGCCCAAGTAGCGATCGCTC 150619 37 100.0 35 ..................................... ATCCAGGGGCAGCTCTTCCCCTTACACACCAAGGG 150691 37 100.0 34 ..................................... GAAGATTTCCATCATTTTGCCTCCTCGATTGATA 150762 37 100.0 35 ..................................... CAATGCGATCGCCCAGTCCGAAACTACGAATGCCA 150834 37 100.0 38 ..................................... GAATCGGGATCTATATTTAGTCTGCATATGCCATAGGG 150909 37 100.0 34 ..................................... ATTGATGAATCGCTGACCGTACCCAAGCCCTACT 150980 37 100.0 34 ..................................... GATGCCGAGGTAGATTGAGCCGGATGGCGGCAGA 151051 37 100.0 34 ..................................... GGCGGCTTTGGAGTCTCGCCAGCCCGAATGGATA 151122 37 100.0 37 ..................................... CCAGTTGAGATCGGACATCTCGGCGGTTCTTACACGT 151196 37 100.0 34 ..................................... GCCTACCTCGGTGGGCAGTTGCAAGTGGCGAACA 151267 37 100.0 34 ..................................... TGCGCTCTGGGCAGCTGGCTTTCGCAGCCACCGA 151338 37 100.0 34 ..................................... CTTATGCGATGGGGAGTTGTCTAAGACCCCAACA 151409 37 100.0 34 ..................................... GCCGCGCACAGGTGGAAGCAAAAAAACCTCTAGA 151480 37 100.0 34 ..................................... TCCTTGGTTGAGTGGAAAGCCGGACTCGTTGTCC 151551 37 100.0 33 ..................................... GGCGATCGCCTCATTCGCACCGATCGGAAGACC 151621 37 100.0 33 ..................................... GGCATCTGCTTTCGGATCTATAAAGAAAATCTT 151691 37 100.0 32 ..................................... TTTATTAGCTATTGGCTAACCGTGGGCAGCGA 151760 37 100.0 36 ..................................... ATTCTTGCCCTGAACGAGATGCTGCTGAGTTTAGGA 151833 37 100.0 38 ..................................... GACAGGCAAGTCACGTGTCTCCGACGGAGCGATCGCGC 151908 37 100.0 34 ..................................... TTTTCAGGAAGGCAAATAGCTTGCCGATAAACTT 151979 37 100.0 36 ..................................... ACTCGTGTCCGGATGGCATTCGCAGTTTCGGGCTGA 152052 37 100.0 35 ..................................... AACGTGACCACCCAACAGACCGGCATCGCCCAGAA 152124 37 100.0 34 ..................................... ATCCACCGGATGCGCACCGAACCGGGAAGAATAA 152195 37 100.0 37 ..................................... CAGGATACCTCTGCTTCAGACGGCGCAGGGCGTGAGA 152269 37 100.0 36 ..................................... TACGCGAAGCGTGCCGGAGGCGATCGCACCCCATTT 152342 37 100.0 34 ..................................... TGGAGCGGTGTTCTGAGCGGCGACGGGGATACAC 152413 37 100.0 35 ..................................... TTCTACCACTCCCTCTACGGATGGGCATCCGGGAA 152485 37 100.0 38 ..................................... ATCACGTACTGCAAAGATCAGCCATACAAGCAAACGCC 152560 37 100.0 37 ..................................... TCGAAGGCTTTAACAAACCCCTTGATAAATATAGGTT 152634 37 100.0 40 ..................................... TTCGCATTCTGTAGCCTAATGTCACTTTCTTCTTCTTCGA 152711 37 100.0 35 ..................................... GCAGGGGAAAACAGCGATTTTCCTGCGCGAAGCGA 152783 37 100.0 36 ..................................... AGCCCTAAGGTAGTCTTACCCCACCGCCTCCCGTTT 152856 37 100.0 37 ..................................... CTGTGTCAGATCTAACGCCATCGGAAATGACGACCGA 152930 37 100.0 38 ..................................... AGGGATAACCGCCACGGGTTTTGCGCCATTCTTGAGAA 153005 37 100.0 37 ..................................... CTGTGCAGTTTTCTCCGAGCAGAGGAATCTGCACACT 153079 37 100.0 34 ..................................... TCTGGTCTGCCCGAACAGATAATGAGTTCGGCAG 153150 37 100.0 42 ..................................... ATCCCATTACTCCGGGATGCCCTGAACCGGCGAGTGTAGCGA 153229 37 100.0 37 ..................................... CTTGATGCCGACAGATACTGCAATATGTAGGCGATCG 153303 37 100.0 38 ..................................... CGCTTCAATCGACAATCCGCATCGAGTGGCAGGAAGAT 153378 37 100.0 36 ..................................... GCTGTGTAAGATCTTCAAGGCTTATGCTAAGACCAA 153451 37 100.0 31 ..................................... TCGGCAGTGATGGGGGAAGCCTCCGCGGCTT 153519 37 100.0 33 ..................................... AACCGCCCAGACCTAGGTATTGATCCTAAGTCT 153589 37 100.0 33 ..................................... TGATGGCGAACGCTCCGGCAGTATCGAGAATGG 153659 37 100.0 33 ..................................... CGGGCAGCGGATTTGGATGAAGCGTGCCATCTC 153729 37 100.0 37 ..................................... ATGACAACTCTTCCACGACAACTCTTATGGGTGGGTC 153803 37 100.0 36 ..................................... ATGACTCGTATATGGTACATAGGATTGGGTTGACTC 153876 37 100.0 34 ..................................... AGTGTTAAGGATGGGGTACTTACGGTCATCGAGA 153947 37 100.0 34 ..................................... GCCTACTAGCCGGTGTAGCAGTACCATTCTGGTG 154018 37 100.0 34 ..................................... GATAAATGTTACACCAGCTTTCTCCAGTCTTGCT 154089 37 100.0 41 ..................................... GGTTATAGCGCAAATACCGCCGTTACTTTAAACATCCCCAA 154167 37 100.0 34 ..................................... TTGTGAGGTGTGAATATCACCAGGAGGTAGCAAC 154238 37 100.0 35 ..................................... CACTGGGGCGGCACTGGGTAACCTTCAAGGGCAAC 154310 37 100.0 33 ..................................... CTTATCGAGGATTATCTCTAGTTTGTCGTAGTT 154380 37 100.0 38 ..................................... GGTAAGACCCAAGCATCTTTTGGCAACTCTTGCCATGC 154455 37 100.0 34 ..................................... ATTTCCTTAAATAGAGGTTAAAAATGGATTATAA 154526 37 100.0 34 ..................................... GCCCCAGCACGAATGATTGGGCGAAAGTTCTCGA 154597 37 100.0 35 ..................................... AAATGGACTTCCCTGCCTGGGATGTATGGAGCAAG 154669 37 100.0 34 ..................................... GAGGAAACAGAGCGCTATTTGGCGCCAGATACGG 154740 37 100.0 33 ..................................... CCTGTGGCAGTCTTGAGGTACGGAAAATAGTAC 154810 37 100.0 32 ..................................... AGAAGCACCGGGTAGACGTCGTAGCCCTGAGG 154879 37 100.0 40 ..................................... GCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 154956 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ========================================== ================== 95 37 100.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCACTCTCCAAGTTGCTTGATTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTGACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAAGAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : GTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 20176-21293 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAD01000065.1 Fischerella thermalis WC441 NODE_206_length_117388_cov_17.580383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 20176 37 100.0 36 ..................................... CCTTTCCCAACCAACAATACCGCCATTGGCGTATCC 20249 37 100.0 35 ..................................... GAATTCTGGATGATCCTCGATCGGATCTGGCGCTT 20321 37 100.0 36 ..................................... ATCAAGTCACTTTCGTACATCTCCGTGGAGGGGAGT 20394 37 100.0 35 ..................................... CTAAAGAGACACATATGCTAGTGAAACCTTCATGT 20466 37 100.0 34 ..................................... AAAAACCAAGAAACAATGGAGCAATTTTTGAGTG 20537 37 100.0 35 ..................................... CGGCTGGCTGCTGCTCGGATGGCTGCGAGCGATCG 20609 37 100.0 35 ..................................... CGATCGCCACTGCGATCGGGCTGGATAGTTCCGGG 20681 37 100.0 41 ..................................... GGCTGCCTTCCCGAATGCAGCGATCTGGAAGATATGGTCTT 20759 37 100.0 33 ..................................... GTGGTGCCGATCAGCCGGAGAGCGGTGTTCATC 20829 37 100.0 34 ..................................... CGGGATGAGGAAGCTCCAAACATCCTTGCCCGAC 20900 37 100.0 32 ..................................... CTTCTTTTCATAGCGATCGCACACCCCATCGA 20969 37 100.0 35 ..................................... CAAGCAGCGCCCCATCGCGCCCGGCGGAGGCAGTA 21041 37 100.0 34 ..................................... CTGTGCAGGCAGCGATCGCTATTCTTCGGGCAGA 21112 37 100.0 38 ..................................... GCCGACGTATTGCCAGAAACAAGCCCAATCCAAATAGG 21187 37 100.0 33 ..................................... TGATGGCGCCACCCTGACCATCGCCCCCAACCT 21257 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 16 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGATGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGAACCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCT # Right flank : CGGCGATCNNNNNNNNNNAATGAATCTTTACTAATCTCTGCGACGCTCATTTCTCAAAATAGAAGACACCAGATGACTGAGGGCATTTCTATTTCTTTGTCGAGATGCAGAAATTAATTCTGCCTTTTGTCCTGGTTCTAACCACGCGATCGCTCTGTCAGCAATGGTAGCGACAAAAAAAGTAGCTATTGTGACTAATAATGTATTGATGATCACTGCTGCTAACCCTAAAGGAGCAATCAGCAGAATGATCAGAGTAATACTGCCATTAAATATGGATACTAAAGCATTGCGTAGTGTGGCGACACGAGGCAAAATATACATAAGAATTGGCAAATAATTAATTATTCTAGCTGTAGTCTTTATAACTAAGATATTACTGAAATTAGATTTCAGCCACAAAAAGTCAATAATTTAATTGTTTATACAAATTGTCGTAAAAAGCTTTACACAAGCATTCATTAGCAATCTAAAATCGATAATTACGATATTTTCTTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 112702-107029 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAD01000065.1 Fischerella thermalis WC441 NODE_206_length_117388_cov_17.580383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 112701 37 100.0 38 ..................................... GGGCACATATATGCCGGGATCACCATCGTCCGTGCCGC 112626 37 100.0 37 ..................................... GTTTCTGGATTGCGCCGAAAATGGTTGGATCTCCTGC 112552 37 100.0 34 ..................................... TTTCAAGAACAAAAAGCTCTTCCGACACTTTTTT 112481 37 100.0 35 ..................................... TACCCCTCCCCAGATGCCACTGGAGCTTGCGGATG 112409 37 100.0 34 ..................................... GACGCGACGACCTTATTGTTGACGATTCGGAGGA 112338 37 100.0 33 ..................................... GAACTTCTTATCATCGGCGATCGCGGCACCACA 112268 37 100.0 33 ..................................... TAGATGCGGTCTAGGGCGGAATCGATTACCCTC 112198 37 100.0 39 ..................................... TTCGGCTGCTGCGCTATCTTCTCTATCCAGTCGGGGTTT 112122 37 100.0 37 ..................................... GATTACGGTGGCTCCCGGTTCGATCGCGGTCAGGAAC 112048 37 100.0 36 ..................................... CTGGAATGTATGGGGCTAAGCGGGAGGCTAGCTTTA 111975 37 100.0 35 ..................................... CCACCGTCCCTGGCATGGATGTATGCCACCCGCCC 111903 37 100.0 34 ..................................... TGGGGTGCGATCGCGGAGCAGATGTGGGGTGCGA 111832 37 100.0 31 ..................................... GGAGATTTTCGGGATCCTGCGCAATCCCGTA 111764 37 100.0 33 ..................................... GTCGAGGGGTGGGATGATCTCGCGGTGGGAATG 111694 37 100.0 33 ..................................... CATATATATATAGGAAAAAGTGTGCAGATTTCT 111624 37 100.0 40 ..................................... AAGGATTCATCGATGATATAGCTCGATCGAACTGAGGGAA 111547 37 100.0 35 ..................................... TTTATTTATTATTCACGGAGAAGCACCATGGAGAT 111475 37 100.0 34 ..................................... GATCGCTGCTGCCAGAGGGGTCTTGCGATCGCTG 111404 37 100.0 32 ..................................... GAGTCTCTCCGACTCCCCGCCGAATGGCACCC 111335 37 100.0 33 ..................................... GTACCGCCCAGATACCGACGATCTACTTCGAGC 111265 37 100.0 34 ..................................... GCCGGAGCGGACAACCACCTCTCCCGATGCCAGG 111194 37 100.0 35 ..................................... GATCTTTCCCTTTGTCGCTCCTACCGTGATGGCGT 111122 37 100.0 36 ..................................... TGCTACGGCTTTCATTATCTTTAGCAACACCTTGAC 111049 37 100.0 36 ..................................... CGCGAAGCGTGCCGGACGGCATCTCGCGGATACCAG 110976 37 100.0 47 ..................................... GAACGCAGGATTGCTAAAGAGTACAAGCTGATTAGCGCAATCTTCGA 110892 37 100.0 36 ..................................... ATTTGGCGGCTGAGGCGACCCCAGATGCTGGAGAAT 110819 37 100.0 33 ..................................... CGGTGGTGCCGGCTTTGGCGACCACATCGCTCT 110749 37 100.0 34 ..................................... AATGCCGATTGGGTGAAGTCGATCGAGCGCAAAA 110678 37 100.0 38 ..................................... TGGTAGAGTCGCGGAACCTACCCTGCCAGCTACCAGAG 110603 37 100.0 36 ..................................... CTGTCCACTGCTCCGGCACGAAGCCTATCTGGCTGT 110530 37 100.0 34 ..................................... TCCGAGCAGGCACTCAAGCAAAGCGGGCTGGGCG 110459 37 100.0 33 ..................................... GCTCCCAAATCACCTGGATTCTGCCGGAGAGGG 110389 37 100.0 32 ..................................... GAACCGGACTTGACTGAAGGCGATCGCGTCGA 110320 37 100.0 35 ..................................... TTGCGATCGGCTGGGGGCAAATCGAGGCACAGATC 110248 37 100.0 33 ..................................... TGCCATCGACCAAGAGGCGATCGCTCACCCACC 110178 37 100.0 33 ..................................... TTTATCCTTCCCGGCTCGTGGCGCATCCGGTGG 110108 37 100.0 38 ..................................... GGGATTCTGGAAGACTTAACGAAGAATGGGCAGGTATC 110033 37 100.0 33 ..................................... TAGTGTAGCGACGAGCGACGCGTCCGTCAATCG 109963 37 100.0 35 ..................................... TTTCTCGTCAGCGAACGCGCCACCGACAGTTACCA 109891 37 100.0 35 ..................................... GATCGCGGTCAGCGCGTGGAGAAGCGCCGCCACAG 109819 37 100.0 34 ..................................... CCGGAGCAGCGAAGCTCCGCGTTCGCTGGCTGCA 109748 37 100.0 34 ..................................... TCTACCACTATCCGGTAGCACTCATCCGATTTGA 109677 37 100.0 36 ..................................... TGAAGCTTAATGACAGTCATTGCTTGACTCCAAATC 109604 37 100.0 39 ..................................... CACACTCCGGCAAGTTCTACCGCGTCCGGTGCGGCGATC 109528 37 100.0 40 ..................................... CAAGGGCATGTGGCTCTCGCTCATTGCCACGCCTGCAAAG 109451 37 100.0 38 ..................................... TTCGGAGCGATTACGCAACTGGTCGGGATGCGCCCCTG 109376 37 100.0 34 ..................................... GCATGGACAATCAATCATCATCATCCCAAAAGAA 109305 37 100.0 35 ..................................... GCCAAGGTTTGGCAGATCCTCTCCTAGGAAGGCTT 109233 37 100.0 34 ..................................... CCGTCTTCGGTCACCCAGCAAGAATCAGAAAGCA 109162 37 100.0 31 ..................................... CTGCCACTTTATGTGCTGAGTATCCAGCCGG 109094 37 100.0 32 ..................................... CCAGACCCCCAACCAGGACAGGAGCCATCACT 109025 37 100.0 39 ..................................... GACTGGATCCGCTTCACAAATACATCGACGCGATCGCCC 108949 37 100.0 35 ..................................... CTAGTTATGGGGGCGATCGCGCTTTTCTTTTGGAG 108877 37 100.0 36 ..................................... ATTCTCACGTAGCTTTTCCCTGACCGCGTCGAAAAT 108804 37 100.0 34 ..................................... CAACCGCCTCTATTTAGATGAGAAAGACCCAGCG 108733 37 100.0 37 ..................................... TTGGCTTCTGAGATAGTGGTACAGGTCTAGAAATTGG 108659 37 100.0 33 ..................................... GAATCTCCTCGGCTCCCCGCCGAATGGTACCCG 108589 37 100.0 33 ..................................... GGCGCTCCCTTGGATTTGGGCGTAGTACACCTG 108519 37 100.0 36 ..................................... GGGTGGTGGCGATCGCTCCCCTACCTATTCTCCGGG 108446 37 100.0 37 ..................................... TTCTCTTTCTCGTAGTATCTCAGAACCGACTGGGAGG 108372 37 100.0 40 ..................................... GCACCTCCCTACGCCGAGATCTTTATCGATCTGGCACAAG 108295 37 100.0 103 ..................................... CCAAAAAGTTCGCGCAGCGTGCCGGAACGGGCGGGGACAAAGCGCGATTCGGCAGGGACAAAGATTGAAACCCAAAAAGTTCGCGCAGCGTGCCGGAACGATC 108155 37 100.0 32 ..................................... TTGCCCGCTTTTTAGAGAGTCGAGGGAGACCC 108086 37 100.0 34 ..................................... GCGATCGTAGGCGGCGTAGATCTCCAGTTCCGGC 108015 37 100.0 39 ..................................... GAAAGAGCTGAGCGAAGATTTGGGACAATCCCAGCAGAA 107939 37 100.0 33 ..................................... GTGCCTTTCCCGCTTCCCGTCTTTGTGATGATG 107869 37 100.0 34 ..................................... TCCTACGGAAATCTCTGGATGAGCGGTCGAGCTA 107798 37 100.0 36 ..................................... AAAACTACCACCGGGTGCTTCCTTTTTGAGTTGCGT 107725 37 100.0 34 ..................................... ATCGGCAGATCCCTTCCCCCTGCCAATGACACCT 107654 37 100.0 42 ..................................... GAAGCCATCTTCCTGCCATTCGATACGGATGGTCGATTGCAG 107575 37 100.0 35 ..................................... GCGATCGCTGGAGATGGAGTACATCTCCGGTGGCG 107503 37 100.0 34 ..................................... CCATTGTGGGTGGCACGCGATTTCTCTAATAGGG 107432 37 100.0 37 ..................................... ACCTTGGCATTGCCTTAGACAATAAGCCATACCTCCA 107358 37 100.0 37 ..................................... CACTCATTCCGGACTCTTCTGATTGCCTCTGGGAGTT 107284 37 100.0 33 ..................................... CGATAAGTTCTATAGTGTCCCAGAGTTCCCGGT 107214 37 100.0 39 ..................................... AACTCAGTGCTTCTTACTGATGCCCAAGATGTTCAGTGG 107138 37 100.0 36 ..................................... TCGGACGGAAACTTAGCACGACTCAGGATGCTGTTG 107065 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 78 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TCGCGAGCTGGGATGGGGAGAAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCTCCCTCCCGTAGCGCGGACTCCCCTTTAAGGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGTAGAAGATCTGTCCCACGCCTGTCCGAGCCTAGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTATGCGATCGCTCCAGACCGCGAAGACTTTGCAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGCGATCGCCGCATCGGCGACTGCTGACCCGAAT # Right flank : CCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGTCTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGACA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 3 117433-114467 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAD01000065.1 Fischerella thermalis WC441 NODE_206_length_117388_cov_17.580383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 117432 37 100.0 34 ..................................... GGCGATCGCCTCCTTGCATGTACCAAAGCAGGCA 117361 37 100.0 35 ..................................... GGCTCTGGAGGCGAGCCAAGCCGAATGGGTATCGC 117289 37 100.0 43 ..................................... CCTGAGCCGATGGGCTACGAATTTCCCTGCATCGGATAAGTAA 117209 37 100.0 34 ..................................... ATTGGCGGTGAGGTATGGGGCGATCGCAAAGATC 117138 37 100.0 39 ..................................... GGCTCTTTGTGGGGCGATCGCTGGCTGGCTGCGGCGCGA 117062 37 100.0 35 ..................................... GCGATCGCAGCATCGGCGACCGCAGACCCGAACAA 116990 37 100.0 36 ..................................... CCCGCGAACACGCCGGGCAGAATCCGCCGCCGATAC 116917 37 100.0 32 ..................................... CGGTGGCGCGATGGCAGGGAGGTGCGTTACGA 116848 37 100.0 40 ..................................... AGTTGCTTTGCCGGGCAATACCTGCCTCCGGAACTCCCGA 116771 37 100.0 35 ..................................... CCATTCCCTTCGAGGTCTGGGCGATCGCGCCATTG 116699 37 100.0 34 ..................................... ACGTGCATTCCTATGGCGAGGTCGTCCCAGCCCC 116628 37 100.0 36 ..................................... ACTGAGTTGCTAGTTAGGGCATTAAGCTATCCGGAC 116555 37 100.0 35 ..................................... TTCCTCTGGTGCCGAGGTGGCTTCAATGTAAGCCT 116483 37 100.0 34 ..................................... CAACTAGCACTTGGCTGGTTTTGCCGGCACCCAT 116412 37 100.0 36 ..................................... GGATGCTTAGTACGTAAAGCGGCAGGATATCGATGG 116339 37 100.0 39 ..................................... GACCTCGTCGTACTTCGGCATTTTCCCTTTCTCCGCGAC 116263 37 100.0 34 ..................................... TCATTTTTGTGGGGTCTTAGTAAGACCCCGATGC 116192 37 100.0 34 ..................................... TCCGGCAAAAAGAATGCCAGAGGCGTGGAGCGGG 116121 37 100.0 41 ..................................... CGGACGACATCAGACCACCACATAGCCGATGCTGTCGCCAG 116043 37 100.0 40 ..................................... TTTCTGATCCAAGCCCAATCTTCGGCTCTCTTCCCAGCGG 115966 37 100.0 36 ..................................... TTCTTTTTGGGCGGAGAGAGCGATCGCCCCTCGCAG 115893 37 100.0 35 ..................................... GAGATCTCCATCGCCGATGGCTGCGATCGTCCAGC 115821 37 100.0 37 ..................................... AAGTTCCTGTACGAATGGTTCCGGCAAGAAAAAAAAG 115747 37 100.0 38 ..................................... ATCGATCCAGGTGCAGATGCCAGCGCATGGGATGGGGG 115672 37 100.0 36 ..................................... GGGAAAGCCCTTATTTCACCTGCGATCGGATGCCAG 115599 37 100.0 36 ..................................... AGCCTCGACAGTCGGGTGGCGACTGACCGCCCCAGA 115526 37 100.0 38 ..................................... GAAAATCTCTTTGAGTGCTTCCAGCACCTGCCCTTGCC 115451 37 100.0 36 ..................................... GGTGCCCGACTCGCTGTCAGGGGAGGCTATCTTCTC 115378 37 100.0 38 ..................................... TAGCACAGAAAAAAATGGCTTCGCTGTAGCGATCGCGA 115303 37 100.0 41 ..................................... GTAGATTGCTCTTACTGCGGTGGGTAACTTAGTTGATTCAG 115225 37 100.0 32 ..................................... CAGATTCCTTCGATGGGAGAATACTGCACAGA 115156 37 100.0 35 ..................................... TTCTTTGGCGATCTTGCGTTCGACCGACTTCACCC 115084 37 100.0 34 ..................................... GAATCAGCCTGCCAATCGATAGAAGCTCCAGTTC 115013 37 100.0 35 ..................................... CCACCAGAGCTGGGCGGCTGCTTCACCAGCGCCCC 114941 37 100.0 34 ..................................... GATGACACGCTGGCAATCAACCGCGATCGCTGGC 114870 37 100.0 36 ..................................... TATTCGTCGATGCCACCAAGCTCCCTAGCGGATGGC 114797 37 100.0 34 ..................................... CTCGACCTTTCCCTCGAAGGCATCCAGGCTGCGA 114726 37 100.0 41 ..................................... GAAATCTGCCCTCTACGATCGCACCGAAGCACTCCTCAGGG 114648 37 100.0 35 ..................................... GGGGCAGAAGCATATACTGCCTTGGGCGCAAGAAG 114576 37 100.0 36 ..................................... CATTGCATCGAAGGGCGATCGCGGCAAACTGGTTCG 114503 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 41 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CGATTCTGGGATTCCCTCGATGGCAGATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGGGCGCGGCGTAGTCCCGAAATCGGACAAAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCGTCGACCCGGCATCCGCGCCAGGGCGATCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCATCGGAGACTACCTTTGCCCTGAATCCGGGAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGCAGCCCGGTCAGCGAGACCGACTCCCCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA //