Array 1 240081-242926 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080953.1 Hydrogenibacillus sp. N12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 240081 31 100.0 37 ............................... TAATCAAGTTTCTAGGAAACAGGGCAATCTTCTTCAT 240149 31 100.0 36 ............................... CTGCATCGTCGTAGGCGGTGTACGTAAGCGACTCGT 240216 31 100.0 37 ............................... TGGCTGCGAAGGACCTGATGCGGGCCGGAGTCGACAT 240284 31 100.0 35 ............................... CTCGATTGATCGTTCATCTTTCAGAGGTCTGCCAC 240350 31 100.0 37 ............................... CCTTCCCGCGCCGCGAAACGACGGGACGCGGAGGACG 240418 31 100.0 37 ............................... CTTGCTGAGGCGTCGGTATCGCTTGTGAGTGATCACG 240486 31 100.0 36 ............................... TGCGGATCAGCGCGCCGACGCCGCCCTGGTATCCAA 240553 31 100.0 36 ............................... TTCGTCGGGGAACGGCCGTTTTCGCGGCAATACACG 240620 31 100.0 38 ............................... CAGTAGGAACAGCAGTCGGAGGGGTGTTTGAGACTCAC 240689 31 100.0 37 ............................... CACCGTCGCTTCCCGAACCGGCGCGGAGCGTCTTCGT 240757 31 100.0 36 ............................... ACATCCACGTCTTTGCTGATCGGCCCGGTTTGTACC 240824 31 100.0 35 ............................... CTGGGTGCTGAGACTGACGCGGTATATTGATTAGG 240890 31 100.0 36 ............................... TTCTTGCCGATCTCGGCATGGCCACAATCGAGCAAC 240957 31 100.0 35 ............................... GAGCAATTTTTGAAGACGGTAGACCTTTTCTTTGA 241023 31 100.0 38 ............................... TCACAACTCTTCCTCCGCATATCATCCCGGCACCCCCT 241092 31 100.0 34 ............................... CCAGAACGTTCGGTTCATCGTCGGCCGGTTTCCC 241157 31 100.0 35 ............................... GAAAAACGGATCGTAGATCGTCATCGCCGATCACC 241223 31 100.0 36 ............................... GAGATCACGGAGATCATCGTCCGGGGGACGTCGGTC 241290 31 100.0 35 ............................... GTTGATTTCGAGCGCTTCCCGGATTATCATGGAAA 241356 31 100.0 37 ............................... CATCTTCTCTGCCCTCCTTTCCGGTTCAGATCTGTTC 241424 31 100.0 37 ............................... CGGGTTTTGGCGGCCTCCCGGATCCGAATGGCGACCA 241492 31 100.0 36 ............................... GGATGGCGTCCCGGGGAAGATCCATGCCGGCCATCA 241559 31 100.0 36 ............................... CCGCCACGACCTGCGTCGACGGCAGGGCGACGGCGA 241626 31 100.0 36 ............................... TAGGACGGGAAGACCGCTAAAATCGCTTGGTTCCCG 241693 31 100.0 36 ............................... TTCTCATCTGCAAATCTAAAATTCTTAGCTAATGTG 241760 31 100.0 36 ............................... TGCGTTCGTGATCCCGCACGGCCTCCAGGATCTCGA 241827 31 100.0 35 ............................... TTCTCTCGTCGATACTCGAGTACATGTCGCCTCAA 241893 31 100.0 35 ............................... TCCATTCCAGCACTTCGCCGAGCGCGCTCCGGTTC 241959 31 100.0 36 ............................... CGAGAAGCTTGATCTCCTCGTATCCCTTTTCTCGCG 242026 31 100.0 36 ............................... TCCGCCGCCGCCGCGGGCGACGGGGACCCCCCCTCA 242093 31 100.0 36 ............................... CCGGCGCGCAAGGAGACGACGGTCATCACCGGTGTC 242160 31 100.0 35 ............................... GGTCCTGGATATCCTCGGGTACTACGGCGCCAAAC 242226 31 100.0 35 ............................... ACGGTCGACGTCGTGACTTTCCGCGCGACGGAACG 242292 31 100.0 36 ............................... GTTTATGTGACGCGTGCGACTGCATTTTACACTTAT 242359 31 100.0 36 ............................... CCCCTTCGACGTAGTTTTTGGACGACGGGATGATAT 242426 31 100.0 36 ............................... ACAAAGTAACAGACTCAATAAGCTTATTGATAAGAT 242493 31 100.0 37 ............................... AGTCCCCAGATCGAACATCAAAATCACAGAGCAAATT 242561 31 100.0 35 ............................... ATCAACCAGGCCATCGCCATGCGGGCCGCAGCAAT 242627 31 100.0 36 ............................... AGGTGGATTATGTTCGCTTTTCGGCAGTGATGGATT 242694 31 100.0 35 ............................... TTTTTGACGAGGTTACCCGAGGCAAGGGTTCTATC 242760 31 100.0 38 ............................... GTGGAAGGACGTCGGGATGATCGTCGGCAGTGTCGATG 242829 31 100.0 36 ............................... GAGCGATCGCCTCCATGATGGTGCGCATGACCCGAC 242896 31 90.3 0 ............................GGA | ========== ====== ====== ====== =============================== ====================================== ================== 43 31 99.8 36 GTTTTGAGCCTACCTTATGAGGGATTGAAAC # Left flank : CACGTTTTACGATGCGCTGCCCATACCGGAGTCTGTTCTGATCCATTCGGATGTTATGAACGTCCACCATTCGGAATACTATCGCGACGGCAAAGTTCCGCCCGCCGACTGGGATAGCCCAACGCCAATTCCGTTCATATCGGTGACGGGTCGATTCTTGATCGCTCTGGAAGGACAACCCAAATGGGTCAGAACGGCCTTCCAGATCTTGCGGCTGGCGTTTCGTTATGTCGGAGTCGGTGCGAAGACATCGAGCGGTTACGGTCGACTTCGTCTGATCCTTGACAAAGACGATGCTTAAGGATGACAGACATTCAAGCAATTATTGTGCTCATGTCGTCGATCTACGATCGTGCCAAAACCCCCGGGGATCGACGACAACTTGCTGTCTTTTGTATCCTGTGCTATACTTGGCCTAGCGCATTTTTCCAAAGCCTGCGATTGAGGGTCATTAATTCGGTAAAAGGGAAAAGCAAATTGATTATGCGGTGCTTAGTTAG # Right flank : AGCCGCGCCCCTTAAATTAGACAATTTGATCGGTATCCCTATGTGATTCAGACCTAGCTTGTGCTCAGGGCTTCTTTGAGCGTTTCTTGGGGCGTTTTGTACCGCAGGCTTGAATGCAGCCGATGCTCGTTGTAGTACCGGATCCGTTCGGCCAAAAGCGCATCGAGGGCTTCGATGCTCCTTGCTTCAAGCAGAAGGTCTTGATGCTCTGCTTTGAAACGCGAGAAGAAGGATTCGACAATGGGATTTTCCTTCGGTCCCCGCAGGCTGTACGACAGTCGCTGTCCTTCTTCAAGCAGGAGATGACCGACCCACGCGTGACTCAAGAAGGCGCCGCCCTGATCGTGATGGAGGATGGCTTTCGGGCGCTCCCTCTTTTGGGTCAGGATGAACGCTTTGGCCCGTTCCCAAGCCTGAAGCGCGGTCCGAACATCCGGCGAGAAAGAGATGGCATATCCGATCACCATGCGGGTCCGATGGTCCAGAATCGGCAAAAACCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 244294-245741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080953.1 Hydrogenibacillus sp. N12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 244294 31 100.0 37 ............................... TTGCATCCGGGCCGTACAGGGCGATCAGGCGATCGAA 244362 31 100.0 36 ............................... GGGGGATCGCCCGGCCCCGGGGACCCCGCACCACGC 244429 31 100.0 36 ............................... TGAGAAAATCCCCTCCGCAAGTGCCATCTTTTGCAC 244496 31 100.0 36 ............................... CTGCCTTACGTCGCCTGCTTTACTTTCCCCTGCGCC 244563 31 100.0 37 ............................... TCTTTCTCGGGACTCAGGTTGCCAAGAAATTCTTTCA 244631 31 100.0 39 ............................... AGTCGCGCGGCCGAGACGATCGTTTGCAAACGTCCGCTC 244701 31 100.0 39 ............................... CCCAGACGATCTCGAGGCGGTTCTGGAACGGGTCGCCGG 244771 31 100.0 35 ............................... CGGTCAAGGCCGCGCCCGGGGACGCGAAACGTCGC 244837 31 100.0 34 ............................... CCGGGTCGCCGACGTCTGCGGGGCGTGCCCGGTG 244902 31 100.0 36 ............................... CCGGAAGATGCGGTGAGAATCGCTCAGGCGGAAGTC 244969 31 100.0 36 ............................... GCCACAAGGTCGACGGGTTCGAGTTCATGTCCGCTC 245036 31 100.0 36 ............................... TGCTTCCTCATCCCGCCGGCTGAACGCCAGGACGGT 245103 31 100.0 37 ............................... GAAAGACATACAGACTGCGCTCCGGGTCTTCGTCGAT 245171 31 100.0 36 ............................... TCGAGGCGATCCTTAGGGACCTTTTCGGGCGGTGGG 245238 31 96.8 36 .......................T....... TATCTCGGGCGATTCATCGACCTTCTCCTTTAGCGT 245305 31 100.0 36 ............................... TGCTCACGAGCGATCACCTCAAGATCGCCCTTGATA 245372 31 100.0 39 ............................... TTCGCGGAAAATATTTTCGTAGCATAGATCAATAAATGC 245442 31 100.0 35 ............................... CCGGATTTCAATCCGGGGAGGGGTCAGGTGCCGGT 245508 31 100.0 37 ............................... AAGACAGATCGGTTGATCGGCACCGTAACGCCGTCAA 245576 31 100.0 38 ............................... GCCATTGTGTAGCATATTCATTAAAATACCGCCCCCAG 245645 31 100.0 35 ............................... GCGAAAAGAACCGGGACCGCCCGAATCTGATCCGA 245711 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 22 31 99.9 37 GTTTTGAGCCTACCTTATGAGGGATTGAAAC # Left flank : TCGCTCGTGGAATGCGAAGTGTCTTGAGGAGAATCGGCAGGGGAGCCAGCCGCCTGGCCAGCGCCTCTTGCGCCAGACGGATGCGCTCCTGAAGCGGAAGTTGATCTAGCTCCCCTGCCCGAGGAAGTTTTTTAGGAGCGCGATTTCGACCTCCTTTTTGCCGAGGAGCTGTTCCAAATCACGAATGCGCTTCTGGTATTCCTGCTCTTTGTTCGGGGGTTCAAAGAGCTCAGCGCCTTTTTCCAGGAGGGTTTGCTTCCACTTCAAGAGGGTATTCGGATGAACGCCGTATTCCCGGGAAAGTTCGACGAGCGTTTTTTCGCCTTTGATCAGTTCCAAAGCCGCTTTGAATTTGATGGAGCCGGGGATGGATTTTGTTCGTTTCACAGGTCGCCCCTCCTTTGACAGAAGGATACAACATAGTTTTAGCATTTGTCCAGTCTGAGGGGCGCATGACCTGAAACCCCCTCCCGCGGATCAAGGCGCTCCGGTCCTCGCCC # Right flank : CTCAAATTCAAGATACCTTGTATAGCCTTCTCTAACAAGTCCGGTGAAAAACCTCTTCATTTGAAGGAAAACCGGACCCATGGATCGAATTCATTCAATAAAAGCAAGCAAACATCCCTTTCTCAAAGGAGATTCAAACATGCGGCCTCGACGATGGACTTCCCATCAACCCAAATTGTTTCAGCACATTGATATGGAATCCCTCGTGCCACACAATCACATCCTTCGCCAAATCGATCGCGTCCTGGACTTCTCTGCGATCCATGAGTGGGTCGCTCCGCTTTATTCGGAACGCACCGGCCGTCCGGCCGTCGATCCGGAACTCGTCATGCGGATCATCGGACTTGCTTACCTCTTCAACCCCTCTGAGCGGGAACGCTTTCAAACGCTCTCCATGCACGCCGGTTATTTGTGGTTCTTAGGGCTCGATTTCGAATCCGTGCTTCATCCGGAGGCCGGGGGTCCGAGGCTTCCGGATCGTACGACCGTGGTCAAAACAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 247376-248745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080953.1 Hydrogenibacillus sp. N12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 247376 30 100.0 36 .............................. GGCTTTTCCTTGTGTTTAATGCACCGCGTTCTGCTT T [247390] 247443 30 100.0 36 .............................. TTAGCTAAAAATTTTAGGTTCCGTGACGTTGACGAT T [247457] 247510 30 100.0 36 .............................. TCTTCTCCTTTCCTCTATCTTCTTCTCTTTTCCTTT T [247524] 247577 30 100.0 36 .............................. TTAGCTAAAAATTTTAGGTTCCGTGACGTTGACGAT T [247591] 247644 30 100.0 36 .............................. ATGCAAACTGTCGACAGTTTTTCCTTTGCTATATGT T [247658] 247711 30 100.0 37 .............................. CGATGTTCGCGCTCTGAAAAACGAACCGAAAGGAAGG T [247725] 247779 30 100.0 36 .............................. CCGGATGAACGAAGCCCGGGCCCGCCGGAGAGCGGT T [247793] 247846 30 100.0 36 .............................. CGGGAAGGGTTTCCCGAGCTCCGCGGCATCGTTCGG T [247860] 247913 30 100.0 36 .............................. CCGCCGTCTGCGCCCTTCGTCGGAGGGAAAAGCGGC T [247927] 247980 30 100.0 36 .............................. CCGCCGTCTGCGCCCTTCGTCGGAGGGAAAAGCGGC T [247994] 248047 30 100.0 36 .............................. GTTGATTTCGAGGGCGTACCTGATTAACATTAAAGG T [248061] 248114 30 100.0 35 .............................. CCCTCCGCATCGTGCGGGATGCCTGGTCGAACGCG T [248128] 248180 30 100.0 36 .............................. GCGATCTGCAACGTAAGATCCTTTTCCGCGACACCG T [248194] 248247 30 100.0 35 .............................. GAGCTACTGGAGCATCCCTATCGCTCTGGAGGGCC T [248261] 248313 30 96.7 37 .........T.................... CTGAGCTCATCTCGAACGCTTTTGATTTCACTACTAA T [248327] 248381 30 96.7 35 .........G.................... TTCAGCACGATGTAATCGAATGGTCTCGTGAGCGG 248446 30 100.0 36 .............................. AGACGGACACGTCACGCAGTACGATAGCCCTTCCGT 248512 30 100.0 36 .............................. GGTGATGGCCTGCCGATGGCCGGCGGACGGCGATGA 248578 30 100.0 38 .............................. TCGAAAAGACTGGTCCAGTCTTTCGAGACGGAAGCCGA 248646 30 100.0 37 .............................. TTGATCTCCTTCGCGAGAAAGCGGTCCTCATATGTCA 248713 30 86.7 0 ..........C......A.......A..G. | A,AA [248728,248731] ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.1 36 GTTTTGAGCCTACCTATGAGGGATTGAAAC # Left flank : CGGCTTTTGAAGATGGACGTCGTTCCCCTCATTCCCGTGCGATCGCTTCAAAAAGAAGCGCTCCCCGGGTGGCGCCGAGCCGTCCGGGATCCGGAGAAAGCGCGCAAAAGATGGAGCAAGATCAAGGCGGTGCTCGTTCAAAGCATTGTTCGTCGCCTGAATGATCAACCGCATGACCGAGCCAAACGGACGCGACGCGTCGTCATTGAACGCCTTTTTGCCGAAGGCAAATCGCAGCACGGCTTAAGCCGTGCTCGAAGTCGTGGGTTGGAAGCGATGCTGGGGAAGCCATCCTGACAGCTGTGGTGCAGAATCTCAAACGATTAAGCCGGTATGTGCGGAAGCACCCACAGACCGGGAGTTCCGTGTGCCTCAAACCGGCATACGAAAGGCTCACAAGGGAAGTGGCCGCATTTTTGATGGTTCTATTCGTTCTGACGTCACACTTCGTCAGGCGAAGATGGTCGATCCAGTGGACTTAATTCACCAGCCTTCTAACA # Right flank : CTATAAAACAAAAATCAAAGTGGAGGGCAAGAAATGATTAATTCTCGGGAATTTATTAATAAAATTTTGCGTTACTGGCTTACTCTGGAAGCGTTGACGCCTCAAACAGCCGACAAAGCTCATCCCGATGACAAGTTAGAACCGAGTTATGAAATTAATAAGAAAAAAGGTGCAATGCCTTGGATAGAAGGCCATGAACATCGTCGAAAACAACCGCGCGATCAACATCAATGGCATTACATCGTACAAGCCGGCTTGTATGATATTAGAATATTTTATGAAAAGATTTTAGATGAAATTAAAAGCTTAATTGCGGATAATGAACGTGAAGACGACGAGTACGATCGAGCCAGCGGCACCGGCCGGCTGTATGACGTTGAGGTGGACGCCGAAGGACGTCCGATTGCGGAAACGTTCGCATTATCGATGGCCGGCTGGGCTGCCGGCGTCATTCTTCATCAAGGAGTCGGCGCGTTGCAACAGGGAACATGGTGCAACCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 4 275754-280845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080953.1 Hydrogenibacillus sp. N12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 275754 28 100.0 33 ............................ TTTTCCCGAGCTCAAGATCACCGAAAACAGGAA 275815 28 100.0 33 ............................ CCGCTTCCGATGGCGCTCGATCTCGTCTTTCGT 275876 28 100.0 33 ............................ CATAATTCCCGGCGAGGATGTTCACTAAGGAGG 275937 28 100.0 33 ............................ CGACTCATGTCGCTGGTAGCTGTAGTTTCTTTA 275998 28 100.0 33 ............................ TCCTGGGCGCCATGCATGAGGGCGGCGTGACCG 276059 28 100.0 33 ............................ TCTATTTCATGCCGGGTCCGCTGTTCTAAAACC 276120 28 100.0 33 ............................ GCCGGAACGCTCGCCCGCGATCAGGCGATCGAC 276181 28 100.0 33 ............................ CGCTAGAAGGCACAAGCCCATCATTAAGCGTAT 276242 28 100.0 33 ............................ CTTTGAACATCAATAATCTCGGTGCAAAACCGA 276303 28 100.0 33 ............................ CCGGCGGTTCCTGCCGGTCCGCGTCATGGTGCA 276364 28 100.0 33 ............................ CTTACCCAGCGCCTCTTCGATTTTGTCCTCCGG 276425 28 100.0 33 ............................ CGAAAGCCTTACGTATACCACCTACGATGACGC 276486 28 100.0 33 ............................ GTTATTGATGGCGTTGATTTCCGCGAGCTCGCG 276547 28 100.0 33 ............................ TGCGCCTGAGCTTTGGAAGACGCGGAAGGACGA 276608 28 100.0 33 ............................ TTCTAGTTGCTCTTGGTATTACTGTGTCTACCT 276669 28 100.0 33 ............................ TTTTCCCGTTATATTTCGACCGCGTGAGGTAAA 276730 28 100.0 33 ............................ CTTGTAGGTGTGACGTCTCTGGATCTAGTCTAT 276791 28 100.0 33 ............................ CTTTTGATCGTTCTGATAGGTGTCGTTGTGGGT 276852 28 100.0 33 ............................ TTTTGCCTCCCCACGCCTTTTCTTTTCCTTTCG 276913 28 100.0 33 ............................ CTACACGCCCCTGTTCGTCCCTGACAAGATCGT 276974 28 100.0 33 ............................ CGTTTGAGCGCTGGCGCTATTACTACACCCGCG 277035 28 100.0 33 ............................ CTCGTCCGGCTGGCGGTGCTGTACGCACAGCAG 277096 28 100.0 33 ............................ TCCTTTTGCTTTCGCAAACTGGCGGAGGGATTC 277157 28 100.0 33 ............................ CCCATTCGGTGGGAGCCGATTAGGGATGTCGGC 277218 28 100.0 33 ............................ CTTTTCCCCGATCCTGGAGTGCCGGTGTAAGCA 277279 28 100.0 33 ............................ CTCCTCCGCAAAAGCACTTACCATCCAGGCCAG 277340 28 100.0 33 ............................ CCCCCATAATCGCCGGCCGGGCGCTCTGGAGCG 277401 28 100.0 33 ............................ CGCTCGCTGAAGACCGTACGGTCCCATTCGGCG 277462 28 100.0 34 ............................ TTGCCATGACGGACGTTCCTCGCCCCCGCTGGCG 277524 28 100.0 33 ............................ CTCGTTGACCCGCCTCCGCAGGGACAGGGATAC 277585 28 100.0 33 ............................ CGCCCCCGCCATCGCCGGACTCGACCCTTGGCG 277646 28 100.0 33 ............................ TCCCACGCCTGGCCGAAGGTGGGCTCATCACCA 277707 28 100.0 33 ............................ TGAGTCTCTTTCGCGGACGTTTTACGATGAAGT 277768 28 100.0 33 ............................ CGTAGCAACACCTGCTTGTATAGCCGTCAGCGG 277829 28 100.0 33 ............................ CTACCACGTCCTGGGTACCAACACCATACGTCG 277890 28 100.0 33 ............................ TGCGGCTGCTACTGTATTAGTTGCGCTTGGATT 277951 28 100.0 33 ............................ CGAAAGGCCGCTACCAACACCCACAACAACGCC 278012 28 100.0 33 ............................ CGCCCAGCGCGCTGTCCGGCGTGCTAAGGCTCG 278073 28 100.0 33 ............................ GTCATGACCACCGCTGGAAGCGCCGAGGAACAG 278134 28 100.0 33 ............................ GCATATACCTATTTTGAGGCGGGCGAAAAACTG 278195 28 100.0 33 ............................ TCTGGATAGAAGAATATCACGTCTAATTCCGGA 278256 28 100.0 33 ............................ CTGATCGAGGAAATCCGGCGAATCACGGGAGTC 278317 28 100.0 33 ............................ TAAACGTCGTCGTGTCAATCGCCGGCGGGTCGA 278378 28 100.0 33 ............................ TTTCTGGTCGAGCTCCGGGCGGGGCTGAAAGTC 278439 28 100.0 33 ............................ TTTTGCACCGCTCGAAGCAGGGCGTTGATACAA 278500 28 100.0 33 ............................ TAATCCCTACAATCCCGGACCAGACGGCGCCGA 278561 28 100.0 33 ............................ TTTCCGGCCGGAAGAGGTAAATGAAACGGCAAT 278622 28 100.0 33 ............................ TCACGATGAGGAGGAAAATTTAAGCAATGCAGA 278683 28 100.0 33 ............................ CGCATTACAACACCCTCCCGTAAACGGCGAAAA 278744 28 100.0 33 ............................ GCAATGGGTTGGGCTATCAGCCGCTTTGCGAAA 278805 28 100.0 33 ............................ CGCTAACAGCTGTTTGCGCTGGAACGTCGACGC 278866 28 100.0 33 ............................ TTCGATATCGAAGCGATCGGTGGCGGTGGAGGT 278927 28 100.0 33 ............................ TCAGTTCGGCATTGAAAAAGCGACCGTCAGAGA 278988 28 100.0 33 ............................ CCTGTACGACTTCGGCCTCCAGACCTCGATACC 279049 28 100.0 33 ............................ TGCATCGATGCATCCTGAGAGATAGGCCGCCAT 279110 28 100.0 33 ............................ ACCGCTATGGTCAGGCGTTGACGATGACGAGGT 279171 28 100.0 33 ............................ GTTTGAGTTTCCTGCAGAATTGGAACCTCTTCT 279232 28 100.0 33 ............................ TTAGAACGGCTGGCATCTTCGTCAATCGGAGAA 279293 28 100.0 33 ............................ CCGACATCCTTGAAGCCGCAAGGATACTTCGCT 279354 28 100.0 33 ............................ CCGAAGCCCAGAATCGGACATGACGCTTACGAT 279415 28 100.0 33 ............................ TTTCCACTCTTCCCCTGCCAGCCAGGCCAGCAC 279476 28 100.0 33 ............................ TACATCACCGGCTTAAAGTGGGACGGAACCCAC 279537 28 100.0 33 ............................ CATACCATCGCCCAGGGCGAGGTTCCGCCCAAT 279598 28 100.0 33 ............................ TTTCCACTCTTCCCCTGCCAGCCAGGCCAGCAC 279659 28 100.0 33 ............................ TGCCGGCTGGGAGCCGAGGACATCCTCGAGGAA 279720 28 100.0 33 ............................ GCAGAGAGCCTATGGCGACTCTTTCCGTCGTTC 279781 28 100.0 33 ............................ TTAGCAAAACCGGACAGGTGATCGAATTTGACG 279842 28 100.0 33 ............................ CGTCCCCCTCGATCCACGAGCTGAGTCGATAAC 279903 28 100.0 33 ............................ TCACCGATCGGGAACGGTAACGGCGGTCGCCCG 279964 28 100.0 33 ............................ TGTATCCGCATATACAACATTTCACCGCGGCCT 280025 28 100.0 33 ............................ TCCGACGCTCATCCGGGGAAAGGCCGACGACAA 280086 28 100.0 33 ............................ CCAGGCGACGATCCTGGCGCTGCGCCTGCTCAA 280147 28 100.0 33 ............................ GCTCCCAAAACCGGTCAAACATCTGCTCCTGAC 280208 28 100.0 33 ............................ CCCCTCGTCAAGGGAGCGCAACAGGACCTCCCA 280269 28 100.0 33 ............................ TGCGGGTGCGTATGTTGCGTAGCGTGGCGACGG 280330 28 100.0 33 ............................ CGTCGGAGAGTGGGACCGTGGCCTGCGACGCTG 280391 28 100.0 33 ............................ TTCGCAAGCTCCGCCTCGATATAGCGCTCGCGT 280452 28 100.0 33 ............................ CGCCGGTATGTGGACGTGGTGACGTACTTCCTG 280513 28 100.0 33 ............................ TGGCCCGGGAAGCCCGGCTGATCAGCCGGCTTA 280574 28 100.0 33 ............................ TCCTCATCATAGCGTCCCCTCTCATACACCGAG 280635 28 100.0 33 ............................ TGCTTGATCAGCTTCCTGCTGAAGATTTCGCGC 280696 28 100.0 33 ............................ GTCGAAAAAGCAGGGAAGAAAGCGAAGGGCGCG 280757 28 100.0 33 ............................ TTCCGGCAAATCTTCGCCTGCCGCTTCGGGACG 280818 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 84 28 100.0 33 GTTTCCCCCGCGCATGCGGGGATGGACC # Left flank : TGCTCATGAATGAATTTGTGGAGGAGTACGCTGAGAAGGCACCCAAGGCCGTCAAGGTGCTAGAGGAGGGCTTTGACGACGTCACGGCCGTGCTGGTCTTGCCGTGACGCTCACGGCGGCGCTTGCGTACCACGAACGGCGTGGAACGACTCAACGAGGAGATTCGCCGCCGTGAAAGAGTCATCCGCATCTTTCCCAACCGGGAATCCGTAATACGGTTGCTTGGAGCGCTACTCATGGAGATAGACGAGACGTGGACCACTGGGCACCGTTACCTGAATATGGATGAGTATTGGCAGTGGAAGAAGGAACAACAGAAATCCACTGAGCCGGCCATGCTGCACGTTGTGAATGCCTGAGTGACCTGTCCTTTCATTCGCCGAAGAGGGCAATTTACACATGATACTGGACTTGATCCAATGACCGTTGGGTTTGCGTTAGGAGTATGTGTTCAGGGTTTTAAAACCCTTATCCTATCACAAGAAATTGGTTTGTCAAGA # Right flank : CTGCTGCGGTACCGGCACACGGTCAACGTCCCGTGTCAATAGCGGATTAAAACTCCCCAAAAAAATCGCGTTCGATTCCCCACAAACAGCGGATTCAGTTCCCCAAAATCATCGCGCATCATTCCCCAGACGTATGTTCGATCTACGCGGTCACCTCCTCCTTCAGCGCATGGGTCACCCCGGCGCGCAGCTTGTCCTTCATCCGGTAGCTGTTGCCGCGGATGTTGATGGTGGTGGCGTGGTGCAGGAGCCGGTCGAGCAAGGCAGAGGCCAGCACCTGGTCACCGAAGAGTGTCCCCCAGTTGGTGAAGCTGGTGTTGGACGTGATGATCAGGGAGCCATGCTCGTAGCGCTCCGACACGAGCCGGAAGAAGTTCGCGGCGTCCAAGGCGTCAAGCGGCAAGTAGCCGACTTCGTCGCAGATCAGCAGCTTCGGCTGGGTGTAGATGCGCAGGCGCTTGTCCAGCCGTCCCTCTTGGTACGCCCGTCGCAAGTCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 5 283163-286545 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080953.1 Hydrogenibacillus sp. N12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 283163 28 100.0 33 ............................ GATAACCCAGCGCCAACACCCACGACAACACCT 283224 28 100.0 33 ............................ CGCCAATTACGCCCAAGGCGTTTACGCACCTCG 283285 28 100.0 33 ............................ CTACTGCCCGCACTGCGGCGCGTCATAAGGAGG 283346 28 100.0 33 ............................ CTTCGCATCCACACCGCACGGCTTTTTCAGGTT 283407 28 100.0 33 ............................ CGCTTTGCGTGCGGGGCTCCGGCCGGACGAGTT 283468 28 100.0 33 ............................ TCGAGAATGCGCTGCGTAACAAGACGGAGGTCA 283529 28 100.0 33 ............................ TCGAGAGCAGAGAGAGAGGGGAGGACCGCCAGG 283590 28 100.0 33 ............................ GGCGGCGGCGGCGGGAGATGCGGAAGATATGCT 283651 28 100.0 33 ............................ TGCTCGATACAAAAGGAGAAATGCTCGATCGGT 283712 28 100.0 33 ............................ TCTGCCACGACCGGCGGGTGAGAGCGGAAACAG 283773 28 100.0 33 ............................ TTTTGTCGGATCAAGAATACCTACTTTCTTCGT 283834 28 100.0 33 ............................ GTACTCGGCATGGATGCGGAAGTGTACCTGACG 283895 28 100.0 33 ............................ TTTCATCCGAGATCCCGCTCGCCTCGTCGATGA 283956 28 100.0 33 ............................ ACCGGCGGGTCGTCATCATGCGCGCCGTGAATA 284017 28 100.0 33 ............................ GCGATGTGATAGCATCCAGATAGAGGTGGTCGG 284078 28 100.0 33 ............................ GCCGCAACAGTCGCAAAAGCGGCAGGTTTGTTA 284139 28 100.0 33 ............................ TTCTCCCCATTTCGCCATCACGCTTTTTCCTTT 284200 28 100.0 33 ............................ TTCCAGCGCGTGAAGGTCATCCCGGAAATCGAT 284261 28 100.0 33 ............................ CGGACAGATTACGTTCGCGACGGACGTAGACGC 284322 28 100.0 33 ............................ CTGATCCGCCGCATCGAAGATTATCTCGCGAAG 284383 28 100.0 33 ............................ TAAGATGGTTGCGTTCTTCTGGGATGTTGTCGC 284444 28 100.0 33 ............................ TTAAGTGGGAACCGATACGTAATGTGGCAGTTA 284505 28 100.0 33 ............................ ACACGCATGATCTCGCGGACGATATCCCGTTCG 284566 28 100.0 33 ............................ CGGCAGTCACGACGTTCACCGTCGCCGTCCGGC 284627 28 100.0 33 ............................ CCAAGAGCAAAACCTATACCGAAGTCTTGAAGA 284688 28 100.0 33 ............................ TTCGACATTTCCCCGGACGGTCACGGATAAATC 284749 28 100.0 33 ............................ CGTCCGAGAAAGAGACTGATTACTCGAGATAGT 284810 28 100.0 33 ............................ CCCGGCCGGATGTCGTCCGGGTCCTGTATCGGG 284871 28 100.0 33 ............................ TCTCTTCCCGCCAGCGGTAGATCGTCCTCGGCG 284932 28 100.0 33 ............................ TCCTAGCGCTACAAGTACAGTTCCTGCGGCATG 284993 28 100.0 33 ............................ GTATGTCGCCCCCGTCGCGAAGACGGCAGGGGT 285054 28 100.0 33 ............................ CGCACCGAAGAAGTATGACGGCCGGGCGATCGT 285115 28 100.0 33 ............................ CACGTGCAATGCGATGCCCTGTGCCATAGGGCG 285176 28 100.0 33 ............................ CTTCGGTAGCTACAAGCTGCCTATCGCCGAAGT 285237 28 100.0 33 ............................ TTTGGCCAGAGCTTGGACGAATCTTGGCAAGAA 285298 28 100.0 33 ............................ CTGGAGACAAGCCGGGGCAGGGAGGCTTACGCC 285359 28 100.0 33 ............................ CATCAACGCCTACCGGTGAGCCAGTGCCGGGGT 285420 28 96.4 33 .G.......................... GTCAATCGGCTTCGACGGCTTTTACCCCAAAGA 285481 28 100.0 33 ............................ TTTTCTGTGTGCATAAATCAATCCCACAGTAAA 285542 28 100.0 33 ............................ TGACGTTCCCATCTTCCATCGAAAGGGTGAAAA 285603 28 100.0 33 ............................ TGGAAGTGGTTGTCGTCTCGGATCGGTTTTTGC 285664 28 100.0 33 ............................ TTACCGCTTCCGGGCCGCGTTCCCCGATCATCG 285725 28 100.0 33 ............................ TTTGCGCGCGACCGTCCTGGTGTAAGGTGTGTC 285786 28 100.0 33 ............................ CTCAGACGGCGTCGGGAGCTCGATGTGAAGAGA 285847 28 100.0 33 ............................ TTTTTCCATCATCGCCACCTCCAGAAAGACATC 285908 28 100.0 33 ............................ CCAGCACCGACTCCAACCAGCACACCGATAAGA 285969 28 100.0 33 ............................ CTTGTTGGCCTCGACGGCACCGAACCCGGACGG 286030 28 100.0 33 ............................ TGTACCTGACGAACGGCGATGTCCCGACGGTGG 286091 28 100.0 33 ............................ TGCGACCGTGACCTCAGACCAGTACCGGATGCC 286152 28 100.0 33 ............................ TTTTTACTGCTCCATACACACTTTTTTGTTCAC 286213 28 100.0 33 ............................ CGTATCTAACCGTTCGATGGCAATCGGAAGCAG 286274 28 100.0 33 ............................ TCACGAAGATAAGCTCTCCAGTCCCGAATTAAA 286335 28 100.0 33 ............................ GTACTTTTTTACGCACCATCGACCGCGCACGAC 286396 28 100.0 33 ............................ GCATCTCAAGGCCGGCACTGAGGTCAGCCGTCC 286457 28 100.0 33 ............................ CGCTGTTACTGCGGCAGTGCCGCTATTTGTCAT 286518 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.9 33 GTTTCCCCCGCGCATGCGGGGATGGACC # Left flank : AAACCGCACGGTTGCCTTGGCAGAGACAACCGGGCGGAGAGGGTGCATGAACTCGCGCAGTACGGTAATTCCGCCGGTATATCCCTGCTCCCGGATCTCGCGAAAGATTCGCTCCGCATTGAGGACGCCGATACGCATGCGCTGCTCCACATAGGCCTTGTACGGCTCCAGCTTGTGGCCTTTCACCCTACGGCTGCGCGACTTCACCCTCCCCTCCTCCTGCTGCCTCGGCTCACTCACAGCCTTGCGGATGGTTTTGCGGTCATGGCCGTATCTTCTGGCCAGTTCCGAGATGCTGACGCCCTCCTCATACAGCTTCCTGATCTCCATCTTCTCACTCTCCCTCATCACCGGCACCTCCCCAAAAGTGATGGCAGGTGCCATAGTTCGACACAGGGGTGGGGAATTCATCCCGATGATTTTGAGGAAATCATGCCGGTGATTTTGGGGAATCTTTATCCGCTGCTATTGGGGATTTTACATCCGATGTTGACACCCGG # Right flank : CCTCCTCCATATTCCGATCGGTAAGATAAACCTTGTTTCAGTCGTGTCCGGTATCATGTGTAAAAACGGATGGTCCAGGTGACATAAAATGAGCCATCCGGCCCTCTTTGGTAGAATGTGAGACGGAGAAGAAACCACTTCACCAGGAGGGATACCGGATGGCTCAGTACCAGATTACCGTGGACGACGAGATTTTGGAAGGCCTCTTTCAGCGGGATGGAGGCGTGGCAAAGCTGGTGGAGAGTGTGGTCAACCAGATCCTCCAAGCGCAAGTGCAGGAGCATCTGAAAGCGGCGCCATACGAGCGCACGAAAGAACGCCAAGGCTATCGCAACGGAACAGTCACCCGCACCCTGACAACCCGTGTGGGGCGGCTGGTGTTGCGGGTTCCGAGGGTCCGGAATGGCCAGTTCTCCACAGAGCTGTTTGCTCGGTACCAGCGCAGCGAACAAGCGTTCATCATCGCCCTGATGGAGATGGTTGTGAACGGCGTGTCCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 1978667-1972767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080953.1 Hydrogenibacillus sp. N12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================== ================== 1978666 30 100.0 37 .............................. TAGTTGAAAATGGAAAAACAGCTTTAAACATATGGTC 1978599 30 100.0 35 .............................. TTTCATCGCCGTACTGCCTCTCTACTGGCAGGAGG 1978534 30 100.0 36 .............................. TATGCTCATCGCGGGCGCCCGCTCGGAGTGTAAAGC 1978468 30 100.0 35 .............................. GTGAGTAGGCTCGGTCTCGGCGGCGCGGAAAAGCG 1978403 30 100.0 37 .............................. GTTGCTCTATGGGGCATGTCATCACTTACATGAGCAT 1978336 30 100.0 36 .............................. GCACAAAAGACGGCAGGGCTATCGTACGGCGTGACG 1978270 30 100.0 37 .............................. TTTCGCCCGGCCGCGTGTACTACGAGGGCATGGTGTA 1978203 30 100.0 37 .............................. CGTACACGCGGCAAGCACAAGCGCGCGCACGCGATAA 1978136 30 100.0 37 .............................. TCGCCTCCGCATGATTTTTTTGTGAACCGGTTTCCCG 1978069 30 100.0 36 .............................. CGTGATGATACAGCATGGGTTGATGGAGGCGGGATG 1978003 30 100.0 37 .............................. ACTTTGAATAGACGATTCTAAAATTATCTTGAGAAAA 1977936 30 100.0 37 .............................. AGACGCTCATGCTGCCCGTCGAGCAGGCGGTGCATGA 1977869 30 100.0 35 .............................. TCACGCTGGTGATCGAGGCTGGTAAGGCATATGTG 1977804 30 100.0 36 .............................. CAAACCCGAGTTGTTTGTTGATCGGTAGCTTGAGCG 1977738 30 100.0 35 .............................. AAACGCCTTACTCCCGAGGAGGTAAAGATATGGGC 1977673 30 100.0 35 .............................. AAACGGCGCGGACGTCCGCCGAAAAACAAACCCGC 1977608 30 100.0 37 .............................. AAGCGATGCGTTGCGGCATCGACCGCGCGGATGCGGG 1977541 30 100.0 35 .............................. TTTTCACGACGGAAATCGCGCTTAAGCAGGCTTCG 1977476 30 100.0 37 .............................. TTTGCACTCTCTTTTCTTTTTGCGCGAGACCGTGCGC 1977409 30 100.0 37 .............................. ACGGCTGATGGCCGCTTCGAGGGCCTGGTCGGCGTCC 1977342 30 100.0 37 .............................. CTCGGGAAAGTGAACGTCTGATTGCCTTCCTCGCTCA 1977275 30 100.0 34 .............................. GCAGAGGTGCCGTCGGCGTCGGCTTCGCCATCAG 1977211 30 100.0 36 .............................. CCGCTCACGCGCACCAGCTTAGCAGGGGGGGCCTCC 1977145 30 100.0 37 .............................. CGCGCGTACAAAACGAGAGGCCGAAACTGAGCTCGCC 1977078 30 100.0 36 .............................. GCGTATCGAAAATACGAACGACGCTAATGGTAAACA 1977012 30 100.0 35 .............................. TCTCAGGTGCGCCGGTACTCTGCAAGAACATGAGC 1976947 30 100.0 36 .............................. TCATAGTGTCCGCCTTTAGTACGCCTACAAGTCACC 1976881 30 100.0 36 .............................. AGTACACAGCCAATATAAAAGATGTTCTCTATAAAC 1976815 30 100.0 36 .............................. TATGAAATCCCGCGGCTTTTCTCTGTCTGGCGCCGC 1976749 30 100.0 37 .............................. CATCGCTGTTCACGGTTTCCAAGATGTGCATTTTCGT 1976682 30 100.0 33 .............................. GGGGAACTTCTTTCTCTACGCGGAACCGGACAG 1976619 30 100.0 37 .............................. TGCGCCCCCAATTCGATTGGACGTTCAACATACGCTT 1976552 30 100.0 37 .............................. GATGAATTCAAACGGGACCTGTTCAAAATCGCCGTTC 1976485 30 100.0 37 .............................. GTAGACGTGCAGCCCACCGCCTGTGCGGACATCTTCC 1976418 30 100.0 37 .............................. CCGTCGATGCTGTATTCGTAAATGAACCTGTCGTTTG 1976351 30 100.0 37 .............................. GCGCAGGGCCGCCGACTACAGTCAGCTCGCCGGTAAT 1976284 30 100.0 36 .............................. CCGGAACGCCGATCGACGGCGCGGCCGTGGCGACGG 1976218 30 100.0 37 .............................. AACGATCGAGCAGTGAGCGGAGCTCCAGCATGGTAAT 1976151 30 100.0 37 .............................. GAAGTGACGCCACCGCTGCCAGCGGCGCCGCCGGATG 1976084 30 100.0 35 .............................. TAGATATTCGTTCTGATGTCCTGCAACACGTCTTC 1976019 30 100.0 35 .............................. AATCGCCGCTTCGGGTGACCTTTCATCCGGGTTCC 1975954 30 100.0 37 .............................. GGCCACGGGGCCGCGACGCAGGTACATGACCGTCTCG 1975887 30 100.0 37 .............................. TTAAAATGAAATATGTAAGGGAAAAGAGAAGAAGAAA 1975820 30 100.0 35 .............................. ATGGTTTTATGCGAACCGGTCAACCGGTTCGCTTC 1975755 30 100.0 37 .............................. CAGTTAAAGGAAGAGTTTAAGAATGCGGTTGTACGTG 1975688 30 100.0 36 .............................. GCGGAAAAGGCGGCGGGAGAGGCGTACCTCCACTTC 1975622 30 100.0 36 .............................. CTTCATGGCGATCGAGGAGATCGACGGCGTTCGCCT 1975556 30 100.0 36 .............................. CGGTTTTCAGGACGTAAATTTTTTGCGCAAGATTTG 1975490 30 100.0 36 .............................. TTGGCGCCGGCGCTTGTGGACGCTGTCGGTACGATT 1975424 30 100.0 37 .............................. TAGATATCCGCATCGCGCTCCAGTGCAATTTTTCTCT 1975357 30 100.0 37 .............................. CGCATACCGTCGGAAGATGTGCGTCTGGCCTGGGCGT 1975290 30 100.0 37 .............................. GCGTCTTGATCTCGAAGTCCTTGCGGTTCTGCGAATC 1975223 30 100.0 36 .............................. GTCGCGGTCGCGACGACACAAGTGACAGCGACAGAA 1975157 30 100.0 37 .............................. TCGTTCGCCCGGCGCATTTTTTCCGATCGCCAGTCGA 1975090 30 100.0 36 .............................. GCGCATCTTCCTTCCTCCCCTCATTCTTCTCAGGCA 1975024 30 100.0 36 .............................. GGTCGGCGCCGCGGCGAACAAGGCTGCGATGACGAC 1974958 30 100.0 37 .............................. GACCTTTCGCGCCGATCACCCGGCTCTGGTCATCCCG 1974891 30 100.0 36 .............................. TCTTGGCGATGAGATGGAGGTCATGACAGACGGCGA 1974825 30 100.0 36 .............................. CCGGTGTAAAGAGCAGCCTTCGCGCCAATGACCCGA 1974759 30 100.0 38 .............................. GGAGCGCAAGCACCTGGGCGGTCCGGAAAAACGGATCG 1974691 30 100.0 37 .............................. TAGAAAAGACCCGCCAAAGGCCATCCCCCGCCTGCGG 1974624 30 100.0 35 .............................. TCTTCTCGCACAACGGGAAGGCCGCTAAAATCGCT 1974559 30 100.0 39 .............................. CCCCCTCAAGGGCTGCCTCCCTGGCCGCCTGGTACGTCG 1974490 30 100.0 35 .............................. CTAGCACCTCTGATAGTATGGCCGCTCCATGCTGT 1974425 30 100.0 38 .............................. AAGGGCAGCTCCGCCGGTGCGATGCGCGTAACGGGCGA 1974357 30 100.0 37 .............................. TTTGCAAGAGAAAACCGTAGGGCTGTCCGCCCCACGG 1974290 30 100.0 36 .............................. AAAACCCGGTCGTCCGGGAGAATCCGCCCGCCGCTT 1974224 30 100.0 36 .............................. GCTTCCGGCCCGTACGGTTCGACCGGCTTTTCGGGG 1974158 30 96.7 37 ...............C.............. CCGCGCCCTGCTCGGCCGCCCGGGCCATAATCTCCCA 1974091 30 100.0 37 .............................. CCGCTTCCCCGGAATCCCCGCCGCCGGATCGAACGGC 1974024 30 100.0 36 .............................. CCTCGTGAATGAGGCGGAACAATTCCTCCACGCCTT 1973958 30 100.0 37 .............................. TGATCGTTCTCCTTTCCTTGAAAAAATAAAAACGCCC 1973891 30 100.0 37 .............................. CGGTCGGTACATCAAGACCGCCGGCCTCGGTGCCATG 1973824 30 100.0 39 .............................. TATTTACTAACGATAGAGCCTGCTTTTCGACAGACGCAA 1973755 30 100.0 35 .............................. GCGCGTTCCGGCGCCGGGGAGGCCCAGCCGGGGCG 1973690 30 100.0 37 .............................. CCGTCGACGAGGACGAGGGCCGTCGGCTTGATGCGGC 1973623 30 100.0 35 .............................. ATGGAGCGTTTCGTTTTGCATCGTTTCGAGCATGC 1973558 30 100.0 35 .............................. TGCCACATGCTGCCGTGCAAACGGTTGTCGGGTTG 1973493 30 100.0 36 .............................. CTTATCTTTGACAGATTTATTGTTAACATTGATGAA 1973427 30 100.0 36 .............................. ACGTCGCCGTCGCCCAGGCTGCGAAGGAGACGGCGT 1973361 30 100.0 36 .............................. TGCGGTATCTCTCCGCGGCGTGCCATGTCGTAGACG 1973295 30 93.3 36 AG............................ TCTCTAATCTGGGCGTTGTCGGCGTAACGTTCAAAA 1973229 30 100.0 35 .............................. CCCGCCACCGCGAGGCGGGAAATCACAGTACGAGC 1973164 30 100.0 37 .............................. ATCGCTCTGTCGAATTCATTGTAGACATAAAACCTGT 1973097 30 100.0 36 .............................. TTGAAATTGATTTGTCGCCGTTGGGCAAAGAAGAAC 1973031 30 100.0 37 .............................. ATGCCGGTAATCGACGCGCGCCATCGCGTCGTGTACG 1972964 30 100.0 36 .............................. TTTGCCGCGCCGGCCGGAACTGCTTGATGTTGAGTG 1972898 30 93.3 70 ............G................T CCAGCATGTTCCCATTTGTCTCGATGTTGACGTCCTATGCTCAAGAGTTCGTTCGCCAGGTAAAAAAAGC 1972798 30 83.3 0 .........T........C.A....T...A | T,T [1972770,1972776] ========== ====== ====== ====== ============================== ====================================================================== ================== 89 30 99.6 37 GTTTGCAGCCTACCTATGAGGGATTGAAAC # Left flank : TTGTCGGTCGATGTCATTCCGCTTCGTTTCGTCGATGAGGCGCTTCGGTTGATCGAGCAAGGAGACCGGTGGAGGATGGTCGAATTTCAGGTACCGGTGCGGATTCAGTGGTTGCACGCGTATCGCGAAGCGTTTGAACATTATGCCAGTCTCGATACGCTTGTAACGCAGCTTCCCTATGACGATGAACTTGGCCTCCTGAGCCGTTCGCTGGCCGATGAGTGGGGGATCGGCGCTTCTTCCGGTCCATTGATCCTCTCGTAGGAATGATGTTTGACAGTTTTTGCTTTGTTGCTTTGATTCTTTTGTATGGGCTTTGACGTGGAGGGAATGCTGTCGTCGATCCCCAATCGAGCGAAAATCCCGGGGGATCGACGACATCTTGATATTTGGCGAAAATCCTGTTATGATGATGCCAGAGCGGCGAATGTTCCAGGATAGCGCAGCGGATCTTTTTTGCGGTAAAGGATTAGCGTGCTTTATGATTAACGTTATTTTTG # Right flank : TTTGAATATGTTTCAATTTTAGTTTTAGCAAGCGCGGTTATAATAACGACATTAATTTGTGCTTTAAGAAAATATAAAGAATAAAATGCGTGACCGTATTGACAAATTTAGATCGTTGTCGGCAGGATTTTTCTTGCTTGCGAAGAACTACTATGATCAGACGGATATCTTCAATTAGATGGATATCTGCATCGAACTCAATCCGGCTTTATCTTCAGCTTCATCTTTTGGAGGTGTTTATGACCGGGAGGAAATTAAAGCTATACGTTGAGTTCGATTGCCGATGAAAGGATGCTGAAGATGCAATTGAAGTTGAAGTTAACGGCACGAGAGCCGATTCAACTGCCTTTTGAACATAACCATATCCTTCAAGCCATCATCTATCGTTGGATCGATCATCCCGGTTTGCGCGCCTATTTGCATGATCATGGATTCATTTTCGAAAAGCGGCCGTTTAAGCTGTTTGTTTTTTCCAGATTGATGGGAAAGATATCCGTCCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //