Array 1 4486-4932 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB903756.1 Gallibacterium anatis DSM 16844 = F 149 strain DSM 16844 A3EODRAFT_scaffold_87.88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4486 28 100.0 32 ............................ ATTGCAAAGTGTGTTATGACGCACTCCCTGTA 4546 28 100.0 32 ............................ GTTTAACCGTTTAAACACTATTTAGCTAGTGA 4606 28 100.0 32 ............................ CCAACAAAGGAGGTAAAAATGGAAAAATCAAA 4666 28 100.0 32 ............................ GTTATTACACCGTTTAACGGTTAAACAGTCTA 4726 28 100.0 32 ............................ AAGAACATTTATTTGATGACTTTATCATAACA 4786 28 100.0 32 ............................ TTAGCCAATAGGCTGTTCATTGTTGATTGATA 4846 28 100.0 32 ............................ TAATTTAATCGCGAATTTAACTATTAAATTAC 4906 27 78.6 0 ..............-..A.AT..TA... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATGCTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATGTTTTCTTAAAAAGTAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATATGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACCTCTAAAAAAGGTTTTTTATCTTAAAATGTTCTTTAACAATTGACTCTCCTTATATCGTAAGGTATTTGTGTCTA # Right flank : TACAATTACTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCTTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTGTCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGGAGAAACAAGCCAAGGCTTAATTTGATCTGCACCCCAAAAGTTGGACTTATTATCCAACAACATACAAAGGTGCAGATTTTTTATGACTAAATATAACCAAACATTTAAACAACAAGTGGTAGATTTCTACTTTCAACACGAGGAAAACCTTTCTTTAACCTGTCGTACATTTACCGTGTCTAAACGCACATTAAGGCGTTGGATT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12197-10960 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB903721.1 Gallibacterium anatis DSM 16844 = F 149 strain DSM 16844 A3EODRAFT_scaffold_55.56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 12196 32 100.0 35 ................................ AGTTTAAGAAATGACGAAAAAACAAAAGAAGTTAG 12129 32 100.0 33 ................................ ATTTTATTGCGTTCCGCCAATTCTTTAGCAGTA 12064 32 100.0 36 ................................ CCTAATGGGAAACACGATGACCGGATAGATGCACTT 11996 32 100.0 35 ................................ AATGCTTCTATGTTGAGGTCTGGATTTAATCTTTT 11929 32 100.0 34 ................................ TCTTTTGTCATTTCTTTTTGATTGATAATCATTT 11863 32 100.0 33 ................................ AGTTAATAGGGGGGGCCAATGCCTAGAACACTG 11798 32 100.0 34 ................................ AAGTAAAAGTAAGACGAGGCGCACAGGTAGATTA 11732 32 100.0 35 ................................ ATCCCAATATTGCTTTATATAGCCGATATTAAGTA 11665 32 100.0 35 ................................ AAGAAAGATCAGTTTGGGTGAATATCCGTTTTTAT 11598 32 96.9 34 ................A............... CATTTTCTGGATCTATCATATGCCGCGCGAACCT 11532 32 100.0 37 ................................ TCGTTTCCCCTAGCCAACATTCCAACATCAGCCAAAA 11463 32 100.0 35 ................................ TACTAACTCAGGGCAAGGTGTTTGACTTGGGATAG 11396 32 100.0 36 ................................ ATTTTTATATGTGAGAGTTTTCATAATTTTTTCCTT 11328 32 100.0 36 ................................ TTACGCAGATCAATCCTAACAAAACCTTGCTAGAGT 11260 32 100.0 35 ................................ ACTTTGTATGGCAGGGGCATTAAAAGGCTGATGAT 11193 32 100.0 34 ................................ CTAACACTTACTTATCGCAAGTTAAGAAAGTTTC 11127 32 100.0 36 ................................ TACCATGTCAACAAATCTACCTTTATTAGTGATAAA 11059 32 100.0 36 ................................ GACGTATTTAATGCAAAAAAATTTATCGTTAAATTC 10991 32 87.5 0 .....A.....................T..GT | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 99.2 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : CGGTTCGGTCGCCTCACGCGCGACCGTGAATTGAAACTCGTTAAATTCCATTTCAACGCCGTTAAACGCTGCAACGGTCGCCTCACGCGCGACCGTGAATTGAAACCACTCAAGCAAGTAAGCAGTGCTGCCCTTGACCTCGGTCGCCTCACGCGCGACCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAATACCAAATCATCTCAGTTGGCATACATCTCTTTTCAACAATTAAGATCCACTAAAAATGTCGTCATTAATCATTACCTAACACATTCAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGCCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACTGCCTGGCTTTCCAATAAATTATGATTTTTTTCTGTCACTAACTGTAACTTCCGTTGTAATTCAGTAGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTATGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTTTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 2 13754-12591 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB903721.1 Gallibacterium anatis DSM 16844 = F 149 strain DSM 16844 A3EODRAFT_scaffold_55.56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 13753 32 100.0 34 ................................ CCTAATGCCTACTTAACCGCCATTTTAGGAGAAA 13687 32 100.0 33 ................................ CCTACTAGAGGGTCTTTTATTCGGCTCTCTCGC 13622 32 100.0 34 ................................ ATATTGCAAACAAACAATAATCTGGTTAAGTAGG 13556 32 100.0 36 ................................ TTGACTTATTCGGGTTATTTTTTGCGATCCAATCTT 13488 32 100.0 35 ................................ GTGATAATCTTGCTATTGTTGGGCGTGGAATCAAT 13421 32 100.0 36 ................................ ACCTTTACAACCAATCAAGCAAAGGCAAAACAACCA 13353 32 100.0 34 ................................ GCCGTTAGTACTTACAATATCATAACCGTTTCTA 13287 32 100.0 35 ................................ CTGTAAAGGCAGTTTGTCACCCTGCTACACGCTAT 13220 32 100.0 35 ................................ CATTCGCCGCTCTGTTTATCCTGCCATTTTTCACT 13153 32 100.0 34 ................................ TTTAAAAGATCAACCGAATGCACCGCTTAATGAA 13087 32 100.0 37 ................................ AAACAATGAAAAATACAATGATGTTGCTGTTATAGAG 13018 32 100.0 32 ................................ CTACTCTTCAGGCTTAGCTGTTAAAAACAGTT 12954 32 100.0 34 ................................ TTCGCAAATGAATACCTTAATGCCTACTTAACCG 12888 32 100.0 33 ................................ ATTCATTTTCTTGCTCCTGTTTTTTGGTAATAA 12823 32 100.0 34 ................................ TACCTAAAAATCCTCTTAATCTGACTAAATTAAG 12757 32 100.0 34 ................................ TGATTTTGGCACGAATAACCGAGAAAAGACGGTT 12691 32 100.0 37 ................................ TCGTTAAATTCCATTTCAACGCCGTTAAACGCTGCAA 12622 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 100.0 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : CATTCTCAAACCGTTATTTTTAAAATCGGTCGCCTCACGCGCGACCGTGAATTGAAACCTCTTTCATTTTATCGATAACGGATTGTAAATGCGGTCGCCTCACGCGCGACCGTGAATTGAAACGTGCTAATAGCCGTTGTTCAGATACGGCTACAATTCCGGTCGCCTCACGCGCGACCGTGAATTGAAACATCGATAGATCGCCCTGCATTACTCTATCAACGACGGTCGCCTCACGCGCGACCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CACTCAAGCAAGTAAGCAGTGCTGCCCTTGACCTCGGTCGCCTCACGCGCGACCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCGCCTCACGCGCGACCGTGAATTGAAACAGTTTAAGAAATGACGAAAAAACAAAAGAAGTTAGCGGTCGCCTCACGCGCGACCGTGAATTGAAACATTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : NA // Array 3 14427-14063 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB903721.1 Gallibacterium anatis DSM 16844 = F 149 strain DSM 16844 A3EODRAFT_scaffold_55.56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14426 32 100.0 35 ................................ ACAAGCGGACATTCTCAAACCGTTATTTTTAAAAT 14359 32 100.0 33 ................................ CTCTTTCATTTTATCGATAACGGATTGTAAATG 14294 32 100.0 35 ................................ ACAAGCGGACATTCTCAAACCGTTATTTTTAAAAT 14227 32 100.0 33 ................................ CTCTTTCATTTTATCGATAACGGATTGTAAATG 14162 32 100.0 36 ................................ GTGCTAATAGCCGTTGTTCAGATACGGCTACAATTC 14094 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : CGTTAGGAGAACATTATGTTGATGCTGATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGCGATATTACTCCGGATCAATGGGTTAAACTAAAAACTAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCACTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATCCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTGGCGAAATAGGGGAAGTAAGCCTTTATTTTTGTTAATGTTTTAGTATATGCT # Right flank : ATCGATAGATCGCCCTGCATTACTCTATCAACGACGGTCGCCTCACGCGCGACCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCGCCTCACGCGCGACCGTGAATTGAAACCCTAATGCCTACTTAACCGCCATTTTAGGAGAAACGGTCGCCTCACGCGCGACCGTGAATTGAAACCCTACTAGAGGGTCTTTTATTCGGCTCTCTCGCCGGTCGCCTCACGCGCGACCGTGAATTGAAACATATTGCAAACAAACAATAATCTGGTTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA //