Array 1 545590-547384 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJEN01000001.1 Klebsiella pneumoniae strain EuSCAPE_UK082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 545590 29 100.0 32 ............................. TTAAAAAACCAACCACATTGACGAACACGGCC 545651 29 100.0 32 ............................. CATCGCCTGGCGCGCCAGGTACTGTGTAAATA 545712 29 100.0 32 ............................. CGCGGAGAAGTGGCGGCGGCTACGGCATTTCG 545773 29 100.0 32 ............................. ATAATGCTCAACGTTAACGCGGGCGCCGTAGA 545834 29 100.0 32 ............................. GGGGAAGAGGTGATCCGGTTTAACCCGTATGC 545895 29 100.0 32 ............................. ATTATCGGGAACTGCGCGCCTGCGATTATGGC 545956 29 100.0 32 ............................. CGATTACATGTTTAGCGCGCTCCGTCGCATGG 546017 29 96.6 32 ............................A GCACCAGAACTGATTGCGACACGCCTGACTCC 546078 29 100.0 32 ............................. TATCTTCATCTTGTTCCAACACTATACCACAC 546139 29 100.0 32 ............................. GCCGATATTGATTCGGCGTTTGGTGGGGGCGT 546200 29 100.0 32 ............................. AATACGCTGGCTACGCTGGCGATTCGGACGGG 546261 29 100.0 32 ............................. GTTTTGCCCCCTTTCACTGGCCATGAGTGCGA 546322 29 100.0 32 ............................. ATAATACTGTATACATAAACAGTATTTGAGGG 546383 29 100.0 32 ............................. GTTCGAGCAGCAATTGCGTGATCACCCGGATC 546444 29 100.0 32 ............................. TGTTTGCCTGTAGTGTCGTGTTTATCGCCGCC 546505 29 96.6 32 ............................C TGAATTTTCACCAGCGAGCGGTATGCCGAAGG 546566 29 100.0 32 ............................. ATAACGACACTGGTTATTGCCTGACGTGCGGC 546627 29 100.0 32 ............................. GAAGAAGTGGGGCCAAAGGTGCCGCTCGTCAG 546688 29 100.0 32 ............................. CCCGCCGAATATTTCATAAACTGCTGCGTCCA 546749 29 100.0 32 ............................. CGTATTCCTGTGTCGTGGGCGCACGAGAAAAC 546810 29 100.0 32 ............................. ATGCGGGCATGAAAACGACATTTCACACTCAC 546871 29 100.0 32 ............................. GGATTGACGCGTACCTATTTCTCTACACCGTC 546932 29 100.0 32 ............................. GACGGCGAGAGCGTGTTCAACCTCAACACACT 546993 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 547054 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 547115 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 547176 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 547237 29 96.6 32 ...........................T. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 547298 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 547356 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 198729-199122 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJEN01000003.1 Klebsiella pneumoniae strain EuSCAPE_UK082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 198729 28 100.0 33 ............................ CGCCTGCAGGATGCCTGCCGTCTCACCCCTTAT 198790 28 100.0 33 ............................ CGATATTTACCGGGATTTCAGCCAGCACGCTCG 198851 28 100.0 33 ............................ CGAGCTCATCGCCTCCCTGGAGACGGCGGGCGA 198912 28 100.0 33 ............................ CTGTTTCATTCGCTCCGATGGCTCGATCTCCGC 198973 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 199034 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 199095 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 207876-209313 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJEN01000003.1 Klebsiella pneumoniae strain EuSCAPE_UK082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 207876 28 100.0 33 ............................ TCAGGCTTAGGCTTTGAAAGTACCGATGAAGGT 207937 28 100.0 33 ............................ CTGATCGAGTGGGCTAAAACACTCGTGCGGATA 207998 28 100.0 33 ............................ TCCTTTTATTCGCCGTCAGTTTCGCCCCTCAGT 208059 28 100.0 33 ............................ TGGCGGGCCTTATGGGGCGGAAAGGCGGGTTAC 208120 28 100.0 33 ............................ CCTGGCGGCGGTAAACGCTGTTCCCGCGTACCG 208181 28 100.0 33 ............................ TGATCGCCGCCGGCTATGTCCAGAAGAAAGCCT 208242 28 100.0 33 ............................ CGTTGTCCAGATAACGCCGCAGATCAGCAGGCA 208303 28 100.0 33 ............................ TGTCAGCACCGGCAAAAGCCGCCGCGGCTGCGG 208364 28 100.0 33 ............................ CACTACTAAGCACTGGATATTCGTTGCCGCGCT 208425 28 100.0 33 ............................ TTAACGAGTCCTGTAAAGAGCATGGCGATATGC 208486 28 100.0 33 ............................ CAGCTACTCGCAGCTGGCATCCGCCGCGCGCGG 208547 28 100.0 33 ............................ TTGACGCAGATCCGCCCGTTCATGGGTGAGATT 208608 28 100.0 33 ............................ TCAGGTACTCCTCTTGTTTTTTCGGTTCCGCCT 208669 28 100.0 33 ............................ CTGGACGAGTCATTGAGAGGGAGATACGGCGGA 208730 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 208791 28 100.0 33 ............................ CAATAGTCCGCCCGGAGGCGGCTCATTGTGTCG 208852 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 208913 28 100.0 33 ............................ TCTGGTGAAAACCACACCAGGCCAACCGGGCGG 208974 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 209035 28 100.0 33 ............................ CTTCACGCCGATGGAGCGGTCTTTCTGCGTCGG 209096 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 209157 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 209218 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 209287 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 24 28 99.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAGTTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCATTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //