Array 1 34253-32663 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMJK01000151.1 Acinetobacter schindleri TG19614 A_schindleri_TG19614_152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34252 28 100.0 32 ............................ TATGACACGACAAATAATAGTGGACAAAAAGC 34192 28 100.0 32 ............................ TACCTATTGGTGCTGCTAAATCTACTGAGATT 34132 28 100.0 32 ............................ TATCCGGTAGATAGTTACATGTCTTCTGGTGG 34072 28 100.0 32 ............................ AGTGTGAGAAGTTTTCAGACTCTAGAGTATGC 34012 28 100.0 33 ............................ CTTTCAACACGCCATTTGATATGACTGTTTTGC 33951 28 100.0 32 ............................ TCCAAGAGCATCCCCGAAACGACCAATTCGAA 33891 28 100.0 32 ............................ ATGCATAGCGTTTCGAGTAAGTATTTGGCTCA 33831 28 100.0 32 ............................ AGCACTTCACCTGTTTCGATATTTCGAGCGCG 33771 28 100.0 32 ............................ AGTATTAGCCTCAATAAAAGCCTGAAGTTCAG 33711 28 100.0 32 ............................ TGTCTGAGCAGCTTTTAAAGTGCCATGTTCAT 33651 28 100.0 32 ............................ ACATCCCAGAATAAGTACGCGCAACCGGATCA 33591 28 100.0 32 ............................ AAGCCTTCAACCTCACCTTCAGATAAGCCATA 33531 28 100.0 33 ............................ ACTGTCGTTGTTGAAGAAATTGGCAATGCAGCA 33470 28 100.0 32 ............................ AATACAAATATCTATGGAAAAGCCAAATTTGA 33410 28 100.0 32 ............................ TTCTAAAGCTGGGAAATTGTAGTTTCCAACGC 33350 28 100.0 32 ............................ TGTCATGACCTTACTCCGCATCTCTGCTTTTG 33290 28 96.4 32 C........................... ACAGTTTCATAAGAGTTTTGAACTGTCATCAA 33230 28 100.0 32 ............................ ACATGCTCCAATTTATATTCTGTTTATTCGGT 33170 28 96.4 32 ................T........... ATGAAGAAATCAGAACTTTTCAAAGCAGCTCA 33110 28 100.0 32 ............................ TGAATTGGAATCAGCGAAACAGGTAGGGCGTC 33050 28 100.0 32 ............................ ACTGAATAAGCCCTCTGCTTCAGCAAAGACAT 32990 28 100.0 32 ............................ ATTCGAGCTACGCATTTGCGTCATCGTGTGAG 32930 28 100.0 32 ............................ TTGTGAGTATTGGTCAGAGAATTTCAAAATTA 32870 28 100.0 32 ............................ ATTGCAGAACACTTTCAAGAGACCATTTTTCG 32810 28 100.0 32 ............................ CAGCATAACTACCAGTCGCCTTTGGAAGCAGC 32750 28 100.0 32 ............................ TTGATTCAGTATTGCGGCATTGAAGCATCCCG 32690 28 89.3 0 ..........C............T...G | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.3 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : CCGCATCTACAAGCGCCGCTGGTTT # Right flank : TATTATCTTCAGTAATACTTATGCAAACGAGAGTTTCTGTAAATAATTTTTGTAATAAAAAAGCCAATTATCTCAGTAAGATAATTGGCTTAAGCAAAGAGTTTGGCTATCCGCTTATTCTTCGATCATCCCAATAACACGGCACTACAATCAAATTATTTTCATGTAACCGAGACCATAATCTTACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGCAGGGTAGATTTCATATTGTCATAACGACTATACAAAACCTTATGCACCATCTCCAGGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCTATGACCAATAAATCAAAACTAGAGAAATGGTCGATAACTTCCTTCTCAGAACGTGAAGCATCTGACCAGGTGTCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGCGCAGATTTTGTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 895-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMJK01000039.1 Acinetobacter schindleri TG19614 A_schindleri_TG19614_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 894 28 100.0 32 ............................ AATGAATGACTTGCAATCAGTGACACCGTTTA 834 28 100.0 32 ............................ TTTTGAATACGGCGCTCAAGGTTCTTGTCGAA 774 28 100.0 32 ............................ ATGATTACAGTACAGCGCGAGAAATGGATTGA 714 28 100.0 32 ............................ GGTTACATCAACAGTATCTATCGATAACTCAA 654 28 100.0 32 ............................ AGAAGAACTATGCACCAATGCAGCAGACTACC 594 28 100.0 32 ............................ GTACTCTGAGAACGGCCAGCGCGAAGCTGCCC 534 28 100.0 32 ............................ AGTTAAGTGGATAGGTTCATTATTATTAAAAT 474 28 100.0 32 ............................ TGCAGATAAGCAGCTAAAGCTGGTGATCCCTG 414 28 100.0 32 ............................ AAGTTTTCCGGTAAGCTGATAATAATGGATGG 354 28 100.0 32 ............................ TGTAGAGGTTAAACGTCAAATCCAACAAGGCA 294 28 100.0 32 ............................ AAAAATATTGGTTTTAAAAGATTGAGTATCTA 234 28 100.0 32 ............................ TTTCGATTCAACAAAGGTTTATGTTGTCACTG 174 28 100.0 32 ............................ TTGCGATCATCAGTTCCCTTTTTATTGCTAGT 114 28 100.0 32 ............................ TTCCGATATTATGGGCATTATGGGTATTTTAA 54 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : CCGCATCTACAAGCGCCGCTGGTTT # Right flank : ATGAAATACATAAAAAACAAAGAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8885-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMJK01000015.1 Acinetobacter schindleri TG19614 A_schindleri_TG19614_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8884 28 100.0 32 ............................ TGTTTATTAAAATCAATCAGACTGCATTTTCT 8824 28 100.0 32 ............................ ATAATTTTGTATCTTTCATGCTGCCACCTTTT 8764 28 100.0 32 ............................ AACCCAATTCAGCACCTAGCGCATAAACACTT 8704 28 100.0 32 ............................ ATTTCATCGGCTAATTCGCTCGGCTCAACACC 8644 28 100.0 32 ............................ GGTTGAATTGGGTTTATTCCAGTTGCCTGAGA 8584 28 100.0 32 ............................ GAATATGCCGTCATTCAATTTCAGAAATTAAA 8524 28 100.0 32 ............................ AATTGGCTCAAATACTGAAAATGCTTTCCAGT 8464 28 100.0 32 ............................ ATCAAGCGGACCAATGTCACCAATGACCTTGA 8404 28 100.0 32 ............................ TGCTGATGCGAAAAAGGCTGATTTAGTCGCTC 8344 28 100.0 32 ............................ CAACCAACTGACTTCAATGCCCTAACGGTTGA 8284 28 100.0 32 ............................ TACCAAGGAAAGCGTCTGATTAAAGATGACGG 8224 28 100.0 32 ............................ AGATGGATTTGGACGACCTTGCATTGTATGCA 8164 28 100.0 32 ............................ TTGCGGAACACCTACCAGTGAACTCAAAGCTT 8104 28 100.0 32 ............................ AGTCTGGCTACTCAGCCCAGATTGGGGATGGT 8044 28 100.0 32 ............................ ATTGGCTCATCAACCTTGGCTGCTTACACGGC 7984 28 100.0 32 ............................ TTCATAACCTCGTTATATTCAGCAGTAAACAT 7924 28 100.0 32 ............................ TTCTGATACTTGCTCGCCATTAAATTGACGAG 7864 28 100.0 32 ............................ TCTGAGGGGGTATTTCAAGAATTAATCGATAT 7804 28 100.0 32 ............................ GCAATCCAAGTGTTTCAAGTGACTATCCACTT 7744 28 100.0 32 ............................ AGCAAGAAGCCACCGACATTGAAAACCGCATT 7684 28 100.0 32 ............................ TCAAGCTTCTCTTTTAACTCAGTTGGCATTCT 7624 28 100.0 32 ............................ TGCCCATTCATTCATGGCCACGGCTGACCAGA 7564 28 100.0 32 ............................ AGAGCGCCTAAGCCCTCATCGCTATCACCCAT 7504 28 100.0 32 ............................ TGCTTGAGGGAAGAACTTAATTCCTGCGTACT 7444 28 100.0 32 ............................ AACTACAGTGGTGATTGAGAGATGAGTGAGAT 7384 28 100.0 32 ............................ TCAATGCATCGCCCTCGATGGGGTCGGCAAAT 7324 28 100.0 32 ............................ ATGATCTAAGCAAGCACATTGGCACTATTGCG 7264 28 100.0 32 ............................ TTCGGAATATCTTGTTGAGGAGCAGATTGATA 7204 28 100.0 32 ............................ AATCATCTCTCAATCACCACTGTAGTTGGGCT 7144 28 100.0 32 ............................ TAGATGCATCTATCGAACCAAACTACAGCAAC 7084 28 100.0 32 ............................ AATGGCTTGCAATCGGTTTATTTGGAAGACAC 7024 28 100.0 33 ............................ AGATTGTTTCTACACCACCACCGTTCGCTTCTT 6963 28 100.0 32 ............................ TTTGTGAAGTTTCACTCTGATATTGGTCAGGT 6903 28 100.0 32 ............................ GGGAAGATTTGGCAGCACACCATGCGGTTTTT 6843 28 100.0 32 ............................ TGACTGTTCGGCCTAAGCCTAAATTTGCTTGT 6783 28 100.0 32 ............................ CAAGAGCCAGAAACACCGCTAGCCCAATCAAT 6723 28 100.0 32 ............................ TTAATCAAAATCTAAGGCGGCTTCAATCACGC 6663 28 100.0 32 ............................ TTTAATTAGATCAGGGTTTTTTAATGTCAAAA 6603 28 100.0 32 ............................ TGAATTTAATCCAAGCCAAGGAAGATGGGCAA 6543 28 100.0 32 ............................ GATCAGGCCATGATTGCAAAGACTGCATCGAT 6483 28 100.0 32 ............................ ACTAACGTTCCAGCTGCTGCATCCATCTGACG 6423 28 100.0 32 ............................ GATGGGGAATTTCGGCAATGCTATGCCGGATG 6363 28 100.0 32 ............................ TGGCCTCCAGATGAAGTCGCCTTTATCTTCTT 6303 28 100.0 32 ............................ CATCTGAGTGAGAAAACCAAGACGGAACTACT 6243 28 100.0 32 ............................ TATCTTTGCGGCATCTCTTTATTACTTGCCAA 6183 28 100.0 32 ............................ GTCACCGTATGAATAACAAGCACGATAGTCAT 6123 28 100.0 32 ............................ AGATACTTGTCTAATGCTGGTTTGGCACCAAT 6063 28 100.0 32 ............................ TTGATCGGCGGTCAATTAAATCTTAAAGGTAA 6003 28 100.0 32 ............................ CTCAAGCAGGCACTGGCATTCAAAACAAACGT 5943 28 100.0 32 ............................ ATGATGGAGTATTGGTCATATCGCCACCTATT 5883 28 100.0 32 ............................ TGACTGCGGAAAGTTTTTTGCAATTACCTCTA 5823 28 100.0 32 ............................ TAGTGAAATTATTATTAGACTGATTTCGTATA 5763 28 100.0 32 ............................ TGACATTCTAGGAAAGTCTGTAGGCTGTACTT 5703 28 100.0 32 ............................ GGAAATTCCGAAAGCGAATAATTCGGAAAATG 5643 28 100.0 32 ............................ AAACTCTAACCCAATTATCACGTATGGTAATG 5583 28 100.0 32 ............................ TGATTGATCATTCAGCCAGTCAAAAATATTGA 5523 28 100.0 32 ............................ TTTGCTTACGCGGCGGCCACCAGTGCTTACGC 5463 28 100.0 32 ............................ ATCAGTAGCGGTGCTTCATGTGCACCCTGTGC 5403 28 100.0 32 ............................ GCACAGCAGGCCGAAGCTGAAATGAAAAAGCA 5343 28 100.0 32 ............................ TGCCTGATTCATGCCGCCAAGGATCTGATCGA 5283 28 100.0 32 ............................ TGTCATCAACTGACTGACATACGATGCTTCAT 5223 28 100.0 32 ............................ TTACAGATATTTATAACCGCGACCTTTTGGCA 5163 28 100.0 33 ............................ TTGAACCCTGATGGGTCGCGTAATTGCCACTCT 5102 28 100.0 32 ............................ ATGCTCAAATTCAATTGGTGATCGCAAGTGGT 5042 28 100.0 32 ............................ ATTTATTTTTTTCCTATAAAGATATAGATGTA 4982 28 100.0 32 ............................ AACAAAAACTGGAAGATAAAATCCAGTTGTCT 4922 28 100.0 32 ............................ ATGATCTGTCATGGTTCACTTGCGCCATCTTA 4862 28 100.0 32 ............................ ATAAACTTAGGATAAATCAGGTCATTAAGCGA 4802 28 100.0 32 ............................ AGAAGTTTTGAACAATGACCGGATCTGACTTA 4742 28 100.0 32 ............................ ACCTTCTTCAGCATCCAGGATCGTGACAATCT 4682 28 100.0 32 ............................ TGGCAGTTTTGGCACTACGTGAAGCACTGGAA 4622 28 100.0 32 ............................ AGTCAGGCGTTTTTGCTTACCGAAGCCACTCC 4562 28 100.0 32 ............................ ATTAAACCGTTTTGCTTTTTTAGCCATGTGAT 4502 28 100.0 32 ............................ TTGTAATTCACTGGCGGGCGCCCACCAATATT 4442 28 100.0 32 ............................ TGTCGATGCAATGGAAAAGTTCTTCCATAAAC 4382 28 100.0 33 ............................ ATATAGCGGCTCATGCTGCCGCGAAGATAGTCC 4321 28 100.0 32 ............................ ACATACCCCTGGAATGCACGTGCCGACATTTC 4261 28 100.0 32 ............................ AATGTTCGTTATCGTCAGTTCCAAATTCAATT 4201 28 100.0 32 ............................ ATGCCCTGGTCTTTGCTACAGCATGATTACGA 4141 28 100.0 32 ............................ ATTACCTGATCCTCTGAGCGCTTCTCGAACCG 4081 28 100.0 32 ............................ TACAAGATCTTTCGGAAGCCAGGGAAGATATC 4021 28 100.0 32 ............................ TGTTTTTTGTCGCGTCTTGGCAATGCGGAAGC 3961 28 100.0 32 ............................ ACGAAACACTAAATAAGACTGATACGGATAGG 3901 28 100.0 32 ............................ CTAGAAACAACGCTAATAACGCCGTACTTAAT 3841 28 100.0 32 ............................ AATGAATATGGGAGTGATGGAGGCAATGAGGA 3781 28 100.0 32 ............................ CGTAGAATCCCTAACCACGCTTGAAACACCTC 3721 28 100.0 32 ............................ AGAACATGTCAACACTCACCCCAATTGAGTTT 3661 28 100.0 32 ............................ TGACTATGACTCGATTGCAGAATCGCAAGAAT 3601 28 100.0 32 ............................ GACCATGCGTTCGGTTTCCAACTGTCGGATAA 3541 28 100.0 33 ............................ TTCCAGCATGTCGTTGACCAGTGAACCATGCAT 3480 28 100.0 32 ............................ TTTATCCGTGGTGATAAGCATTCACCAGCAGA 3420 28 100.0 32 ............................ AACGAATGGGTGAAGAAAAACTATGGGGTATC 3360 28 100.0 32 ............................ TTTGTATAAAAACAACTTGGCAAAGCCAAAAC 3300 28 100.0 32 ............................ ATGCTGGCCAGATCGCAAGGGAAGAAGCTAAA 3240 28 100.0 32 ............................ GGCATCAGCCGCAGTAAACACCTTGCAAACAG 3180 28 100.0 32 ............................ TTCAGGATCTCGGGCCTGACGACGAATACCAC 3120 28 100.0 32 ............................ AGGATGCACGTCGTGCCTTTGCTCAGAATATG 3060 28 100.0 32 ............................ AATACCGTCGATATTTGGAGTTGGTTTTGTGA 3000 28 100.0 32 ............................ AATGATGGATGTAAGCCCTGCTGAAAATAATG 2940 28 100.0 32 ............................ TTAACCCAGGCTGCTTGCTGTTGCCCTTGTTC 2880 28 100.0 32 ............................ TAGTTCACCAACTGAACACTCAATAGATATTA 2820 28 100.0 33 ............................ ACTAAAAAAGGCCGTGACCAGATCGGATCACTC 2759 28 100.0 32 ............................ GATGTGGCTAGTACAACTCAACAGCTAATGGC 2699 28 100.0 32 ............................ TGCAGACAATACCGAACTACTGGTGCGAATCC 2639 28 100.0 32 ............................ AGTAAGGTGCCATGCTCTTTAAATCCAAAATG 2579 28 100.0 32 ............................ AACACAACAATCATTTAAAGAACCTAGATTCT 2519 28 100.0 32 ............................ AAAGTCAGAACAGGGTACAGTCATTACCGGTG 2459 28 100.0 32 ............................ GATTGAAGTACAAGCAGCTTTTTTGGCCTACA 2399 28 100.0 32 ............................ TGATAGCTGAAACCTACACACTTGTCTTCACG 2339 28 100.0 32 ............................ TTACCGATTGTAATTAACTGCCTTGGCGTAGC 2279 28 100.0 32 ............................ AACAAATTTAAGATTGCCTTGGGGCTTTTCTC 2219 28 100.0 32 ............................ TTGAGTTAGTTTTTGATGCGGGTGAATCATAT 2159 28 100.0 33 ............................ AGGCACGACTATGGCCACCGCCATCAATCCCAA 2098 28 100.0 32 ............................ AATACGGCGTTGTAGTAATTGATCAGATAATA 2038 28 100.0 33 ............................ ATGGAGCAGTCCAGAGTGTTGGCTGCTCAAACA 1977 28 100.0 33 ............................ TAAACCAGACAATGAAAACGGTCGAATTTATAT 1916 28 100.0 32 ............................ ATCACCTCGCGTCACCTCAGTTATCTTATGTT 1856 28 100.0 33 ............................ CGATAAATGCCGCAAAGCTTGTGTAATAGCGGT 1795 28 100.0 32 ............................ TTGACGGAAGCGAGTATCTGAAACACTGGCTG 1735 28 100.0 32 ............................ CTTATCAATCACTCTTTATCGAAAGAATTTAA 1675 28 100.0 32 ............................ TTGACGCCAGGAAATCTTCCCAATGAGGTGCT 1615 28 100.0 32 ............................ TTCTCCATGAAGTCTAAGATCATGGAGGTTAG 1555 28 100.0 32 ............................ TTAACGGCAACGACTGGTAAAGTGCAGGCTAA 1495 28 100.0 32 ............................ TAATGATCTAGTCACAATATGGATTGCTGACA 1435 28 100.0 32 ............................ TTAATCATTTCCGCTTCATCCCAATTTGGGAT 1375 28 100.0 32 ............................ TTTTATTACAACCACAAATTCCGTCTGTACTG 1315 28 100.0 32 ............................ CATGAACGTTCAATAGCTTTAATGGTCGCGTC 1255 28 100.0 32 ............................ TTAGGTTGACGTTTAGTTTTTGGCTTTTCTTC 1195 28 100.0 32 ............................ ATTGTCGCTGCAGGTGCTCAGTCTGGGATCGC 1135 28 100.0 32 ............................ TGGACGCAAAGGAAATTGCCGAGAACTCAGAG 1075 28 100.0 32 ............................ AGAGATTCAAACCCAACAAAATAAACAGCAAA 1015 28 100.0 32 ............................ ACACAAACAGCCACTCAAGGTGTCATCAGCTC 955 28 100.0 32 ............................ GACTTGGTGAAACAGGTGAATCACTTTGGTTC 895 28 100.0 32 ............................ CAATGGGTACAAAGGTTCAGTTACCAGAGATT 835 28 100.0 32 ............................ AACTAAAGTTAATCCCAAACCAACCACCACAC 775 28 100.0 32 ............................ GGGAACGCAGGCACAGCCAGTAAGCTGAAAGA 715 28 100.0 32 ............................ GACTCAAGCCTTTCACTGGGTAATACGTAATG 655 28 100.0 32 ............................ TACAAATTCAAACGGCGCATTAAGGGGTGGGA 595 28 100.0 32 ............................ AAAAGTCATTTCTCCTTCGGGTGAAGCCACGT 535 28 100.0 32 ............................ GTATTGACAGCACATCTGTAGCTCAACTGGAA 475 28 100.0 32 ............................ TTGTTGTGATAAAGCATAACAAACACCTTTAT 415 28 100.0 32 ............................ TTTTGGATGAGCTTAGAACTGCAACAATTGTC 355 28 100.0 32 ............................ ATCATTACCCCAAGTTATGTAATTTTCATATT 295 28 100.0 32 ............................ TTTATTTTTAATGCGTAGCGGTGATGGGAACA 235 28 100.0 32 ............................ GCATCGGCCGGGTCTTCGTCTGTTTTTTCCGT 175 28 100.0 33 ............................ TGTTGTATAACCATGCCTATACGCCTGTTATGA 114 28 100.0 32 ............................ ATGATGTGTGATTAGCCACTGGAGAGATCAAT 54 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 148 28 100.0 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : TTAGATATCAGACATTGGCTTGATCGTTTAGAAGATTATGTACATATCACTTCTATTCGTGAAGTACCTAGCGACATTAAAGGCTATGCCATTTACAAGCGTAAGCAAGTGAAAACCAATGCTCAGCGTTTGGCACGACACCGTGTAAAACGTGGTGATATTGGTTTTGATGAAGCATTAGCAAGATATAGCAATGTGGTGACCACAACTAACTTGCCTTATATTGAAATGAAAAGCCTGAGCACTTCAGATCAGCAAAGTGAAAAACGTTTTAAATTGTTTATCGAAAAGCAATCTGCTGAAAAATCTGAAACTCAGGTTTTTAGCACTTATGGATTAAGTTCGGTGTCATCTGTACCAGAATTTTAACCCAATATTTTTATACTCTTTAACAGCTTAATAAAATCAATAGCTTATGATAGTGGTTTAAAACTTGGGTCTTTTGAGAGATTTAAGAGTTAAATCACTGTTATAACTTTATTTTTTGCTTTAAAATTGCT # Right flank : ATGAAATACATAAAAAACAAAGAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //