Array 1 37843-38098 **** Predicted by CRISPRDetect 2.4 *** >NZ_AONC01000029.1 Imhoffiella purpurea strain AK35 contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 37843 37 100.0 36 ..................................... ATCCGGGAGCTCGGCGCGCCGAGCACGATTTACCGG 37916 37 100.0 37 ..................................... TAGCGTGATTCCGTAGAAGTCGCGCATGCGACGCGCG 37990 37 100.0 35 ..................................... ATGCTCAACTGGTGCGAGCGCGCCAAGTCCAAGGC 38062 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 GCATCGCCCGGCCAGTAGGTCGGGCGTGGATTGAAAC # Left flank : CGTCACCGTCCTCAGAGTCGAGAATCATCCATGCTGATCATCGTCACCTACGACGTCTCGACCGAAACGGCCGAAGGCCGCCGTCGGCTGCGCCGGGTCGCCAAGAATTGCGAGCGTATGGGCCAACGGGTACAGAAGTCGGTCTTCGAATGCGAGCTCGACCAGATACAGTTCGAGGCATTGGAGCGCGACCTGTTGGCCGAGATCGACCTGGCGGAAGACAATCTCCGTTTCTATCGCATCACCGAACCGCGCGGACTGCGCGTCAAGCAGTACGGCACCTTCCGCTCGACCGATTTCGACGGCCCCCTCGTCATCTGATGCGCGAACCTCAAGTGACCGTCATGGACCCGCACCTTTCGCGCTCCGCTCAAGTGACTGGTTTTCCAACACAAACCTCCTCAGTGCCAGCCCGAAACCTGAAGCTGTCTTGCAAGCAACGCCAGGTTCGCGCAACATCGTCCAGCACCATCATCGAATCAAAGGGTTACGATGACGGA # Right flank : CAACAAGCAATGGCCATCCGATATCGCGCGAATCGAGGAAGAGCTGTCCATCCTGCAAGGCATTCTGTCGGAGAAAAGCGATGAACCCTGAACAAGCCGCTGGCGTTTTGGAGGAGGTCCTGCGTCGAGCCATGGACGAAGGGCTGGAGCTGCGCGACAAGGATCAGCTGAATGAGCATGACGAGGGTGCGCTCATGGCCTATTTCACGCTGCTCGACTGGGGAAAGTCTCAGGCCGAACTTTCGGGCATCGAGTTCGCCGACCGCGAGCTACAGGATTTCGATCCCTATTCTCTGCTGAATCAGCGGCAGGCGGCCTGAGACGATCCGGCGCAATACGCTGCGCTATTGCGCCCTACAGGGCGTTGAAGCCTCAGCGTTCAGCCAAGGGAGGATCGGGGGCGGCTGACAGGGGTATCGACAGCGGGGATGCTGTCGTCAAGCCTGCAGGGAAGTATTCGCGGCGTCCCCGGGCAGCCGCCACCCGGCCCGGAACGGGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGGCCAGTAGGTCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.00,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 1 10723-15450 **** Predicted by CRISPRDetect 2.4 *** >NZ_AONC01000039.1 Imhoffiella purpurea strain AK35 contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10723 29 100.0 32 ............................. GTGCGCTTGTCTCGCTGCTCTCGCTGTCAATC 10784 29 100.0 33 ............................. CAGGCGCTTGACCTCGACGCGATCGCCGATCAC 10846 29 100.0 32 ............................. ATTCCGTGATCCGCGCCTATCCGCGCTATCAA 10907 29 100.0 32 ............................. GATCAGATCGAATTCATTTCAATGCATCGGCA 10968 29 100.0 32 ............................. GCGAGCGCCCGAGCACGCTGGCGAACAGCTCG 11029 29 100.0 32 ............................. CCATCGAAGCAATGCAAAACGGCCATCGAGTC 11090 29 100.0 32 ............................. ATCCGACTCTCGCTGTTTTGCTGCATCCAGAT 11151 29 96.6 32 ............................T GCAATACCCGAATCCGTTTTGTCCGGGATCGC 11212 29 100.0 32 ............................. TTCATCCTCGAATACATGGTTGAACCTGGATT 11273 29 100.0 32 ............................. GTGCATGCAGGACGCGCGACGCCGGTGATTTG 11334 29 100.0 32 ............................. CTGGAGACTAGAGAGCTGTATGCGTTTGACGA 11395 29 100.0 32 ............................. TCCAGGCATATGCCGCCTATATCGAGTCGATC 11456 29 100.0 31 ............................. TATGTTGTGCTCGTCGAGGCTTGTGCGTGAC 11516 29 100.0 32 ............................. ACGGCAGCGTTTCAAAAATCTTGGCCGTAGTA 11577 29 100.0 32 ............................. ATTCTGAGTAGATCACCGTCTTCTTTGGTTAG 11638 29 100.0 32 ............................. ATCGCCTATTCAGCCTGCCTCGTATTCGGCGT 11699 29 96.6 32 ............................T CCATATGCGGCCTCAGCGCTCTGAGGTATGTG 11760 29 100.0 32 ............................. ACCTCTTCGCCTGGCTCTTGGACCTTCTTCAG 11821 29 100.0 32 ............................. TAGGCCAGGCCCGCGGGGATGTCGAAGCTTGC 11882 29 100.0 32 ............................. TAGTATGACTGAATCTGATTTTTTAGAGGAAT 11943 29 100.0 32 ............................. ATTTCGCGGTTGCACGGGGTCCTGTCTGCAGA 12004 29 100.0 32 ............................. TCAGGTTGCCGGATGCGCTGTGCGAGCAGTGT 12065 29 100.0 32 ............................. TGCCCCCAGAGCCTTCGGTAGGTCGTGCACCC 12126 29 100.0 32 ............................. GGCCGCCGGACCGGCATTACCTGGGCCGAGGC 12187 29 100.0 32 ............................. GTCAGGGGTAGGCTCAGAATCAACAGAATGAC 12248 29 100.0 32 ............................. CCATGAGTGCACCTATGGCGGTTGTCCGTTGA 12309 29 100.0 32 ............................. CCAGCTGAGTGAGAGGGATTCGCCCCAAAGGG 12370 29 100.0 32 ............................. AAATCGATGATGCCCTGGAGGATGTCCATCAG 12431 29 100.0 32 ............................. TCCTGGGCCTCTGGAGTGAAGGCAAGACAGAA 12492 29 100.0 33 ............................. GTCGCCTGGCTCTTCTCTGGCCTGGCTCACGGC 12554 29 100.0 32 ............................. GTTCATTCCTGGCTCAACGGCGATGAATGGAA 12615 29 100.0 32 ............................. GATTATTGTGCTCCGTTTCACCATCTGGACAG 12676 29 100.0 32 ............................. GTCCAACTGATCCAATGCCTGCGCGGCGTCCG 12737 29 100.0 32 ............................. ACCGGCTCTCCCGGGACGATGTCCCCGATGCG 12798 29 100.0 32 ............................. ACCGGGAAAACGGCCGTGAACACCGAAGGAGT 12859 29 100.0 32 ............................. TTGTAGGGCAGCAGCCGATCCTCATCGGGGCC 12920 29 100.0 32 ............................. GTATTTGAACATCACCTTCACCAGTGCCCTCA 12981 29 100.0 32 ............................. CGAGTGCCCGAGCACGTTGGCGAACGGCCCGC 13042 29 100.0 32 ............................. GTATGATCGCCAGCGAGCGCACCTTTGATGAT 13103 29 100.0 32 ............................. TCACGACGGCTACATCCGGCCAGGTCGATCTG 13164 29 100.0 32 ............................. ATGAAACCGTCTCAGTCGTAACCCGTGATGGC 13225 29 100.0 32 ............................. TGTGACCAAGTCGTGACGGCGATGCGTAACGC 13286 29 100.0 32 ............................. CGGAGACCTCGACCTGCTTGACGTCGGCTTTG 13347 29 100.0 32 ............................. CATGAGCACCACAACAACCACCGAGCCGGCGA 13408 29 100.0 32 ............................. GACCCTGGATTAGCCACTATTGTCCTATACGA 13469 29 100.0 32 ............................. GCGCGGCTTGAGCGACTCAATGAACTCGGGGA 13530 29 100.0 32 ............................. GTCTTGGCTTCGCTGTGGACGACCTTGCCGCC 13591 29 100.0 32 ............................. TTGTCCACTCGGTTGAGGAGCCGATCGCGCCG 13652 29 100.0 32 ............................. GTCTACGACGTCCTGCCGGCAACAGCTCCGGC 13713 29 100.0 32 ............................. ACGTCGTCGTTCTCCATGCTGGTCTGGCTGAC 13774 29 100.0 32 ............................. TAGTCAGTTGCCGGCGGCATAGACAGCCATGA 13835 29 100.0 32 ............................. GGTCCGGCCAGACCATTGCGACCGCAGATGAA 13896 29 100.0 32 ............................. GTTGGCAGGCCGGGATCGATCCGAACGCTCTG 13957 29 100.0 32 ............................. GCGTTGTATGCGCTGTATCGAGTTCGGGTGTG 14018 29 100.0 32 ............................. ACGCGACCGACAATCTGGATATGGAACATGCG 14079 29 100.0 32 ............................. TCCTCGTGAACCTCGCCGGCGCGGGTCAATGG 14140 29 100.0 32 ............................. GACCGCGGCCTCGATGTGCGCCACTGCAACGG 14201 29 100.0 32 ............................. CTGACAGAAGAGGGCGAGAAAGCGGCGACGGA 14262 29 100.0 32 ............................. ATCGAACGCCATCCGGACCTCGTCACTCGCCA 14323 29 100.0 32 ............................. TCGAGGCCCTTATGCCGATGCTTCTCCAGAGC 14384 29 100.0 32 ............................. ATCCTGCCCTCGGCGGCCGTCACCGACGCGCT 14445 29 100.0 32 ............................. CGCGGCACGGTGCTGATTCCGCCCGGTGTGCA 14506 29 100.0 32 ............................. TGATGACCACAAAGACGAAGCCCAGATCGGCG 14567 29 100.0 32 ............................. CCCAGCGATAAACACCGCTTTTCGTGATACAG 14628 29 100.0 32 ............................. GACTGGCTGGCGTTCGCCGAGATCTACGGCAT 14689 29 100.0 32 ............................. GGACGAGAGTGCCGCATGATTGCACGAGGAAC 14750 29 100.0 32 ............................. GATTGGAATAGCCGGACCACTCGTAAAGGGTC 14811 29 100.0 32 ............................. CCGACGATGGTCCTCGTCCGAGAACTCGTACC 14872 29 100.0 33 ............................. CCAATTGAATTGGTATTCGCCGGCCGGGGCGCT 14934 29 100.0 32 ............................. CAGAGGCCCGAGTCGGACATGACGCTGCCGGA 14995 29 100.0 32 ............................. GCCCTGATCGACGCGCTCGAACTCGCCGATCA 15056 29 100.0 32 ............................. GCCCTGATCGACGCGCTCGAACTCGCCGATCA 15117 29 100.0 32 ............................. TACATCAGGACTTCCGGGGTCGCGCAATTATG 15178 29 100.0 32 ............................. TATCTTCCATTGACACGATACCGGAGAAGTAA 15239 29 100.0 32 ............................. TCCTGCCCGAACACATGCCGCCGGCCCTGGTC 15300 29 100.0 32 ............................. GTGGCGGTCATGTCCTTGTTGTAGGAGATGTA 15361 29 100.0 32 ............................. ACTTGGGCCTGATGCGAATTGATGACCTCGCC 15422 29 86.2 0 ..............C....A...C.G... | ========== ====== ====== ====== ============================= ================================= ================== 78 29 99.7 32 CCGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : GATCATCCCCATGATCGAGGAGGTGCTGGCCGCCGGAGAGATCGCTCCACCCGAACCGGCACCGGAGGCGGTCGCCCCGGCCATCGACGACGGGAAGCCCCTGGGCGATGCTGGTCATCGTCACTGAGAACGTCCCGCCCCGACTGCGCGGCCGGCTCGCCGTCTGGCTGCTGGAGATCCGCGCCGGCGTCTATATCGGCACCCCGTCCAAGCGGCTGCGCGAATTCATCTGGGCTCAGGTGCAGGAAGGTGTGGAAGAAGGCAACGCCGTGATGGCCTGGAGCACCAACACCGAATCCGGCTACGATTTCCTCACCGTCGGCCCGAACCGACGCATCCCGGTCGATTTCGACGGCCTCCGCCTGGTCAGTTTCCTGCCGCCCAATGAGCCACAGAACGATCTTTGACAATCGAGAACCATCCCCTTTGAAAAGGGGGATTTTTTTGGTAGATTTCTTCTCGTCTGATTTCCACATGAAAATCAGATAAATACGGGAAGT # Right flank : GCCAGATCAGCGAAAAACCCTAAAAGATGGCCTCGATCCCCACTCCTTGGTGAAGTGCGTGAAGTGCAGCGCACTGCGGCTGCTCTCGGTCATCAGATGGCTTATAGCGACAATGGAATATGTCCGTTTGCCCACTGAAATTGCTTTCCGTGACCGACCATAGCAGCATTCGATCATCTGTCCGTGTGCGCCCCAAGTCCTTACTGTGTTCAGCGCTTATCAGGCTTGAGATCTGTGGCATACGGGGTGCGCCGCAGAAATTCTGTCTCGAGAAAGAGATCCCTTATGAGTGCTCCGAACGATACCGAGCGAGCGAAAGACGCCGATGCGGGCGTAGGCGGTGCGCCGCTTCCAGGATCGCAAATGCGCCTGGACGTGGTGCACGAATTCTCCGCGACGCTCGGCTCGGAACTGGACCGGGAGCATCTGCTCGCGGCGATCTTGGACAGCGCCTTGCGCCTGCCGGAACTCGATGGCGGCGGACTCTACTGGCGCGAGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9295-9461 **** Predicted by CRISPRDetect 2.4 *** >NZ_AONC01000062.1 Imhoffiella purpurea strain AK35 contig62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 9295 24 100.0 49 ........................ GCATTGAAGGAGAGAGCGGCGGCACGATCAGCGGAACCGGGATGACGGT 9368 24 100.0 46 ........................ ATATTGAAGGTGTTTGGTATGGTTTTCGCCCCCATCGAACGGAATC 9438 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================= ================== 3 24 100.0 48 GATTCTCGCCCTTCGGGGCGAGCG # Left flank : AGGACGCGAGCATTGCGGCATACGCGCCCCAACTGAAGGACAAGCGCGTGATTCTGGCGGCGAACTGGCTGGCCTGGGAGGCCCTGCCGCTTTGGCCAATGATCGGCGGCGCCACGCCGGGTGTCACCAGTGCCAGCCTGCAGCGCGGACGCAACAAGTGCTGGCGTTATCCGACATGCGCGGAATGGCTCGGCTGGGAGGGGCTGCGCGCCCTGGTGGTCGGACTCGATGGCCTGCCGGCCCCGGAGATCGAGGCACTGGGGATCCGCCTGTGGGAAACCGAGATCCTCGGCCGCCCCGAGGGGGGCGAATTCGGCCTGGCGCGAACCCTGAGCAACCCTCATTTCCCCGCAGGTTCGCGTAGAAGCTAAGCGATTGAATTACATGACATGGATATGGAACAAGGACACGGAAATCCGCCGAAGACGTGCCTGGAGATTCAGGTTCGCGCAAACTCAACCCTGGAATATGGAAGGACAAGGGTTTACACCGATAGAGGT # Right flank : GGCATTGCGTCTGGCTGCTGCACTCAGTGCTCCGAAGCGACGCCGAGATCCGAATGCACGGCGCCCCGGATCCTCGGCTTTGACTTGGGCGACAGCAACAACCGCGAGATCCCAGGCCGGAACTCGACTTGACATAAAATTCACCCTTGACATCCTGGGAGTCGTTTTTTACTTTACATAACGCAAGCGCTCGAACGAGGCTTGCAGACATGGCGGTTCGTCAAGAACGCCCACTCACATATTGCTCCATCGAGGATATGCATATGAACAACATCGACTTTTCGCCCCTCTTCCGCTCCATGATCGGCTTCGACCGCATGACCTCCGCGCTGGAGAACGCCTATCGGTCCGAGCCCGGCGGTTACCCTCCCTACAACATCGAGGCCAGCGGCGAGAACGACTACCGCATCACCATGGCGGTCGCCGGCTTCTCGCAGAAGGATCTGGGCATGGAGGTCCGTGAGAACATCCTCACCGTCTCGGGCGGACGCCCGGACGAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTCGCCCTTCGGGGCGAGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 145078-148161 **** Predicted by CRISPRDetect 2.4 *** >NZ_AONC01000040.1 Imhoffiella purpurea strain AK35 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145078 29 100.0 32 ............................. TCCATCTAGGCTGGTCGTGCCAGGAAGCTGAA 145139 29 100.0 32 ............................. TGAAATATTTGACGCTGGTATCAGGTACGTTC 145200 29 100.0 32 ............................. GCCCTGGGGTCCGGCTGGCGAATGGCATGACG 145261 29 100.0 32 ............................. GCGGCCATTGCCGATTCTCTCCCTCTGGAGCC 145322 29 100.0 32 ............................. TGGTTAGTGGATGGATTAGTGTCGCCGCGCAA 145383 29 100.0 32 ............................. GCCGTTCCGAGTTCGACGGCATGGAGCATGAG 145444 29 100.0 32 ............................. AGAAAACGATCGCGCCGAGAAAGACATGCCAA 145505 29 100.0 32 ............................. GGCCTATGACCCGAATCTGCTCAGCGGCACGA 145566 29 96.6 32 ............................G CGCGGACGACCGCCGCGCTCTGGTAAACGGGG 145627 29 100.0 32 ............................. ATTCCGGCGTCCGATCTCGTGGAGGCGCTCCA 145688 29 100.0 32 ............................. CCCTTCATCGACCGCTTCACCTCGGGCGTCGG 145749 29 100.0 32 ............................. GCACTGACCGGGCTGCCCTATTTCCGCATCGA 145810 29 100.0 32 ............................. TGATGAAGCTGGCGGTTTCGCTGGCCCAAGAA 145871 29 100.0 32 ............................. CAGCAATGGACCAGATCCACCCAGGATGTCGG 145932 29 100.0 32 ............................. CCGCTCTTCAGATCGCGAGGAGTTCAACGAGG 145993 29 100.0 32 ............................. TGCTCGCCGAGGCGGATACCGAATCGGAGGAT 146054 29 100.0 32 ............................. GGGGCATGGATCGGCGGGACCGTCGCCGGAGT 146115 29 100.0 32 ............................. AGCCGCCGCGGCGCCCTCGGCCTTGGGCGCCG 146176 29 100.0 32 ............................. GACGGGAACCGCCGGGGATCTGCAGGCCGACA 146237 29 100.0 32 ............................. TAAGAAGAGAAAGAGTCATGAGCAACGTCACT 146298 29 100.0 32 ............................. TGCCCACCGCGTCCGGCGGAACCGCGTCCGTG 146359 29 96.6 32 ............................G GTCACGCCAAGCGCGCGAAAAGCCGATTGAAC 146420 29 100.0 32 ............................. CGACGATCGCTGACCTCGGCATGATCCGCGAC 146481 29 100.0 32 ............................. ATCGAGGCGGACAGCAGGATGCCGCTGTCCTC 146542 29 100.0 32 ............................. GCGGACGCCCGTATGGTGTGGCTGTTGCAGCG 146603 29 100.0 32 ............................. TGGTGGTCAAGGACGAGGCGGCCGCCGTGCTC 146664 29 100.0 32 ............................. TGGCGTAGTCAGCACGGGTCACGGGTTCTCGA 146725 29 100.0 32 ............................. GTGGTCAATCTGGCGGGGCTGCTGGTCCTGTG 146786 29 100.0 32 ............................. GCATTCGAACTGACAGCGCAGACGATCCTGAT 146847 29 100.0 32 ............................. CGCGACATCCGTCCCGTCGACGACGATCTCGG 146908 29 100.0 32 ............................. CGGCTGAGTAAGGAGCCGATATGAGGAATTCT 146969 29 100.0 32 ............................. CGAGGGTGCCGGGGGCGACCCAGGCCGCCCAT 147030 29 100.0 32 ............................. CCGTCGCCGCCCCGGTCCCGACCCAGCCGGCC 147091 29 100.0 32 ............................. AAGGTCGTGATTCAGGGTCGCATCCTCAAGGT 147152 29 96.6 32 ............................G TAGTCCCAGAGGATGTGGTAGTGCGGGGCCTG 147213 29 100.0 32 ............................. CCGTTCGCGCGCGGCCAGATGCCGGACCACCT 147274 29 100.0 32 ............................. TCGCGCAGAACGGCGGTCACGCTGGCCCATTC 147335 29 100.0 32 ............................. CCCGTCATGGCTGACGGCTACGCACTGTTCAG 147396 29 100.0 32 ............................. GAAGCGGATACCAAGGCCCTCGACGCCTTTAC 147457 29 100.0 32 ............................. ACGAATACGGATTAATCGCGGGAGTTGAATCT 147518 29 100.0 32 ............................. CTGTAGCCGAAGTCAGTGCCGGATCTACTGGT 147579 29 96.6 32 ............................G TTCTGGCTGATCGACAACGAGAAGTTCGGCAG 147640 29 100.0 32 ............................. GAATGGCTCTTCGATCTCATCACCCTGCCGCG 147701 29 100.0 32 ............................. GCACCTCAATGAGACTCGAAAGCCTTCAGCGC 147762 29 100.0 32 ............................. CGATTCGGCTGCGGATCGACTCGATTCAGAGA 147823 29 100.0 32 ............................. CGTTCGCCCCGTCGAATACCCGTGCCCAGGTC 147884 29 100.0 32 ............................. ATCGAATGCGATATTCTCGCCGCTCAATTGAA 147945 29 100.0 32 ............................. CCGTTGATCAGGCAGGCATCCAGCACCCCGAC 148006 29 100.0 32 ............................. CAGCGAGATTCCGCTGGCCTTCTTCTCGATCA 148067 29 100.0 32 ............................. TCTCGCTGCTCAAGCCGGAAGCGCTGTCGATC 148128 29 93.1 0 ........T...T................ | C,ACT,A [148148,148153,148157] ========== ====== ====== ====== ============================= ================================ ================== 51 29 99.6 32 GGTTCCCCCGCGCTCGCGGGGATAGGCCC # Left flank : GCCAAGAAGGCGGAGACCGATTCCCAAACCGTGGATCGGCTCGTCAGGCGGGAAGCGGCTAACGTGTTCCGCAAGCAGGACGTGATTCCTACGATGATCGACCGGATCAAGCAAGTCATCCGCATGGAGGAAACCGGTGCCACTGGTCATGATCGTGACGCGTGACGTTACCGATCGATATCGGGGATTTCTTGGGTCGCTGATGCTCGAAGTCGCTCCGACGGTCTACATCTCGCCACGGATGAATCCAGGTGTCCGCTCCCGAACCTGGAAGGTACTCTCCGATTGGCACAAAGCTGAACCGCAAGGAAGCATCGTGATGGTTTGGCGCGATGTGAAGGCGACCGGAGGTATCGGGATAGCCACGCTCGGAACGCCACCGAAGGAGTTGGTTGATGTAGATGGGCTGTGGTTGGTGCGAAAGTCGTTGTGAATTCGTTCTTTGGCAATTTAGTCTATTTGTCTGTTTTCTCTTGCAGTGCATGGGTTTAACTGTAAGA # Right flank : CAGTTTCGGTCGTCTCGGTATATAACTCCCGCTGGGATGGCGACCGGTTCAGACCAGACTGTCGACGACGCCTCCATCCACGCGCAATGCCGCGCCCGAGGTCGCCGAGGAGAGCGTCGAACAGACGTAGACGACCATATTGGCCACCTCTGTGACACTCGCCGCCCGCTGGATGATCGACGAGGGCCGGTTGGCCATGACGAACTCGGCCGCCGCCTCCTCGATCGACTGACTAGGTTTGGTCGCGTCCTTCAGCATCTCGACAAGCCCGTCCGAGAGCGTGGGGCCGGGCAGCACCGAGTTGACCGTGACCCCGGTTCCGGCGACCCGCTTGGAGAGCCCCCGGGCGATCGACAGCTGAGCGGTTTTGCTGAATCCGTAATGGATCATGTCCGAGGGGATGTTGAGCGCCGACTCCGAGGCGATGAAGACGACCCGACCCCAGCCCTTCTCGATCATCCCCGGCAGATAGGCGCGCGAGAGCCGCACGCCGGACATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGCTCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //