Array 1 49172-47125 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOI01000019.1 Lactobacillus baoqingensis strain 47-3 contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 49171 28 100.0 33 ............................ GTTCCCTCACGTTCGTTATCGTTTCGATCTTGA 49110 28 100.0 33 ............................ TGGGCTATCTCGCTTAGGCTTCTCGGGCTCTTT 49049 28 100.0 33 ............................ TCAACACCGATCAGGTTTACCAGTGGCTGGTTG 48988 28 100.0 33 ............................ CACTGGTGCTTTAGCTTGGTATGGCTTCTTATG 48927 28 100.0 33 ............................ TAGACTATTACATTAAGCGACCAATTGCCGTAG 48866 28 100.0 33 ............................ CTCAGACATGGTCAATGCAATTGAATACTTTTC 48805 28 100.0 33 ............................ TAATCCCGACAACTTGCCAGAAGTCAATCACAT 48744 28 100.0 33 ............................ CCCGTTGCTGATTAGCCAGCCGTGTAGCGTTTC 48683 28 96.4 33 A........................... TGCGTATTGGATAAGCGTTGATTTGATACCCAC 48622 28 100.0 33 ............................ TAGCGATCAGAGCTTATGAACACTGGTGCTTTA 48561 28 100.0 33 ............................ CGGTACGGCTGAATTTCTAACCAAGCCCGACGG 48500 28 100.0 33 ............................ TTTTAGCATAATTCATGCCAAGTAATTTACAAC 48439 28 100.0 33 ............................ TCGAATCAGGTTGATTATATCGCCAATCCAAAA 48378 28 100.0 33 ............................ GTCTAACACCGTTCGTAACGTGATTGCTGTGTG 48317 28 100.0 33 ............................ TACTAGTTGTTCCATCAGGAATAGTATATGAGA 48256 28 100.0 33 ............................ TCGCTTACGACTGGCAAGAAGGTGAAATCTACG 48195 28 100.0 33 ............................ AAAATAAACGCATAAATGGAGGATGAACCATGT 48134 28 100.0 33 ............................ CGCTGTTTGCGTCTGCGATAATCTTCCAAAACA 48073 28 100.0 33 ............................ ATATTCATGCCGATCATGGCAACGTTAAGTATC 48012 28 100.0 33 ............................ TACTGTTTGACCGCGTTAAAACACTCGCTGATG 47951 28 100.0 33 ............................ TGTGGCGGTAAACTTATCCCCATATAACTCGCT 47890 28 100.0 33 ............................ CGACATTCGCGATTATCCGCAGGTTGCTGTGGC 47829 28 100.0 33 ............................ ATGGCTGATATTGCATTTACCATGAACGACGTG 47768 28 100.0 33 ............................ CAACGCGCGCTAGAGAAAGTTGAAAGCGACCCA 47707 28 100.0 33 ............................ CAAGGATGTGCTGCTTTCTTATCAGCGCAAGGT 47646 28 100.0 33 ............................ TGACAGTGAGCGCGTGTTATCAGGCAAAGATCC 47585 28 100.0 33 ............................ CGCTGGTCACAAAATCGGTCATTTCATTCACAG 47524 28 100.0 33 ............................ CGCCTTGAGCGGCTCTGCATCGGCCTTCTCATC 47463 28 100.0 33 ............................ CGATAAGTTCTGCGGCAAGTCATCGCGTAAATC 47402 28 100.0 33 ............................ CATTTTGTGAATGATTCTGTGAATGCAAAATGC 47341 28 100.0 33 ............................ TAAACCAAGGTGTAATGAGGATCTGTCTGCTTG 47280 28 75.0 36 ...G.TT....G......A....T...T TTGGTGAAGTACACTGCGGCACGGTATACTATAGGC A [47254] 47215 28 82.1 34 ........T..C.TT..A.......... TTGGGTGGTGAGCCTTCGATGGATCAGTTGTTGC G [47203] 47152 28 82.1 0 ........T...G....A........TA | ========== ====== ====== ====== ============================ ==================================== ================== 34 28 98.1 33 GTATTCCCCGCACACGCGGGGGTGATCC # Left flank : CACGCGGGGGTGATCCCACTGGTGCTTTAGCTTGGTATGGCTTCTTAT # Right flank : GCGCATTACGCCGCCATGAAAAGCGCTAACAGCAGTCTTGTTTCAGCATATTTGCTGAAACGGGACTGCTGTTGTGTTTATTAAAGGTTGTTTAAAAGCGTCGGTTATTTATCGATTATCGATAAATTTCTGCTATGCTGAAACCATACGATGGAGGTGTGGGATGAAATTACGCAGCTGGTTTTTGAAGGTCTGTTTGGTTTTAGCGACGTTGTTGGTGTTGACGTTGGGTGTCGTATTGTTTTGGCGAGCGCCTGGGGCCCTTTTGCAGTCTGGGGTTTCGCCATTGCTGGCGTGGCCTTTTGGCAGCGGCTTGTATGTGATCGTCGCTGGATTTTTGGCGGCGGTGGTTTTTGCTTGGCAGCTGTTGGCGACGATCGATCACAACTTGGCATTTTCACAACGCGCGGTGCAGTTGCTGGCGCGCTTGAAGTGGGCATGTGTGGGGATGCAGGCAGGGGTTTTGCTGTGCTTGCCGATGATTTATACGTTTGCGGATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5340-8054 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOI01000011.1 Lactobacillus baoqingensis strain 47-3 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 5340 28 100.0 33 ............................ TCTGTTGCTCCAGTAGCTAGTGAGGAGGCAAAA 5401 28 100.0 33 ............................ TATCAGAGCGTAATGGATCTAAGGCAATCTTTT 5462 28 100.0 33 ............................ CAGCCAACTGCCCGCGCTCACGCCCACCCCTAT 5523 28 100.0 33 ............................ TAGGTGACATGGCCAATTTTGCTCTTTAGGAAC 5584 28 100.0 33 ............................ CCAATATCTTGGCAAAAACTTCATCACGAAGTT 5645 28 100.0 33 ............................ TACCCCGTTATTTGCGCTCTGCTCGGTTTTAAA 5706 28 100.0 33 ............................ TGAGAAAACTATATCTTGGCAACGGCGATAAGC 5767 28 100.0 33 ............................ CTAAGGCAGATGTTCGCAAGTCCAAAGCTGAGG 5828 28 100.0 33 ............................ TATAGCAATCGCGTCTCAATCAAGAGCGTGTTC 5889 28 100.0 33 ............................ TTTCCGTTGCGAAAATCATTAATTATATGGTTA 5950 28 100.0 34 ............................ ATAACGTGATTAAGGTAGCCACCTTCAACCGTTG 6012 28 100.0 33 ............................ TCCGATCGTGGATGAGTTGCGTTTGAAGATGAA 6073 28 100.0 33 ............................ CAATTTTGCAATTCCTGAACTCGATCTCAACTG 6134 28 100.0 33 ............................ TTCGTCGTAGTCGGGATCATCTTCCATGATGTC 6195 28 100.0 33 ............................ TAAAATAGCCGGCACACAGGCCAACCAAAATTG 6256 28 100.0 33 ............................ AAGTGTCCATACAGAACTTCCCGCCAGCTTGAG 6317 28 100.0 33 ............................ CGGTGTTTCCAGAATTGGAAGTTATGTCGGCAC 6378 28 100.0 33 ............................ TCAAACGTCTGCACCAAAGCCAACCTCCTTTAA 6439 28 100.0 33 ............................ CGGTGGCGGCAGTCTTCGGTTACAACTGGGACT 6500 28 100.0 33 ............................ CCAGCCAAACAAAGCCCCACCGCCCAACTCTAC 6561 28 100.0 33 ............................ TGACCAGATAGCGATCAGAGCTTATGAACACTG 6622 28 100.0 33 ............................ CCAGTTTCGATGTGGCGGTTACACAGCATGTAA 6683 28 100.0 33 ............................ TAGGTGACATGACCAATTTTGCTCTTTAGGAAC 6744 28 100.0 33 ............................ TTCATCAAATCAAAATGAGGGTTGTCTTCGATC 6805 28 100.0 33 ............................ TATGCGATCAACTCAGCCCAAGAAACGTTATAT 6866 28 100.0 33 ............................ CGTGCTGGTTGGCTCGGCGTTGTGTGTGATGAT 6927 28 100.0 33 ............................ CCCATTACATATTCCTGATCAGTACCAGAAGCT 6988 28 100.0 33 ............................ TTAGATTATCGCTCTTTTCAACTTTACGGTTGG 7049 28 100.0 33 ............................ TTTCTTTTGCTGGGCATTTTGCGAGCCAACATT 7110 28 100.0 33 ............................ TTCGGTAGCCGGTTATGCCAAGCTGGTTAGTCG 7171 28 100.0 33 ............................ CAAATGTTTACAATATGGATTTATTTCATAGGC 7232 28 100.0 33 ............................ CCGTCATTCATCATCATCCCTTTCCCTGAAGCC 7293 28 100.0 33 ............................ TAGCTAAGGGCTTCTGGCTCAGTGATTTTGTCC 7354 28 100.0 33 ............................ TGCCCCGTTAAGCAGCGGATCGTATTCGATCGC 7415 28 100.0 33 ............................ CGGAAACCGTTTGTCCCCGTTTTCATCCTCATT 7476 28 100.0 33 ............................ CCCGACTTTGACGGCATCTTGGGCTGAATACCA 7537 28 100.0 33 ............................ TACAACAAGAACAAAGCGGCATATATTGACCAG 7598 28 100.0 33 ............................ CTAGACAAGCGAGACAGGGATACGGTAGCGCGT 7659 28 100.0 35 ............................ CTATAAAAAAAAGAGGTCTTTACCATGCTGGAAAA 7722 28 100.0 33 ............................ TAGGCAAGATATACGCAGTGGCAAACTTATCAG 7783 28 100.0 33 ............................ TCAAACCGGGCCGCGGCCGCCCGTGCGATTATG 7844 28 100.0 33 ............................ TAGTCATGATTGTATTCTCCTTAAAGGTATAGG 7905 28 100.0 33 ............................ CGTTTGTGCGAATAATCGTGCAATCGCATCGCG 7966 28 100.0 33 ............................ TACACGATTAGACGTGCGCACTGGTCAAAAGCT 8027 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 45 28 100.0 33 GTATTCCCCGCACACGCGGGGGTGATCC # Left flank : ACCCTTGATCAAATGATCGCGATTGGTGCGGCACGTTTTGTACCTGGAGAAGCAGTGCAATCGTTTTATCATCTGATCCAAATCGAGCAGCAGTTACCTGCAGAGATTGTGTCATTGACAGGTATCACTGATGACGAATTAGCTCAAAAAGGCGTTCCATTGGCCACTGTGTTGATGGCGTTGAAGGATTTTATTCAAATGCGACCAATCATAGGCTACCATGTTGGGTTTGATGAAAAGTTTATTACAATGGCCGTTCGCACGCTAGATCAGGATAAGTGGGCAAATAAGTTCATTGACTTGATGCCAGTCGTTAAAAGGGTGGACAGATTTTTAGACAGCTATCAGCTGGGTGCAGTCTTAAAGCGATATGGCATTGTTAATTCGCAACCACACAACGCATTGGCAGACGCTCAGGCAACAATGCGTTTGGCGTTGAAGTTAATAAAAAATGGACATTTGGAGATTCCAAAAGCTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAGGCCAATATTCATCTCCCAGGCACCATGGCCGTATTCCCCGCAAATACGTGGAACGTCTGTCTGCATCTCCATAAAAGCCTATTATGGCGGGGCTTTTAACGTGCCGCTGATTTTATACGCCATCTTGCGACCAGATAATGACCCAGATGGTTTACTTAAATAATTTAGAATATACTTCCTCAGCTTCCGACTGGCCTTCATGTGTTGGGTGAATGTAAATGCGTGTTGTGGTATCAATGCTAGAGTGCCCAAGAATGGCAGCAATACTGGTTACGTCCACCTCTGCTTGGGCAAGAAGGGTTGCCTTTGTGTGTCTTAATCCGTGTAAGCTTATTTGCCTTAAATCAGATTTATCGGCTAGTGCTTTCATCCATTCCCATGGGGTGCTCAGCGATAAATGACCGTCGGCAGCTTGGCCGGTGAACAACCATTGATTGGAAGATATTTCACGTCCTTCTGCAAGCAGATCGCGAGCTTGAGTGACACACCATTGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10513-10658 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOI01000011.1 Lactobacillus baoqingensis strain 47-3 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 10513 24 100.0 37 ........................ CGCCAAGCGAGAATTTACGCAGTCTGAAATTAAGTAT 10574 24 100.0 37 ........................ TAACCGAAATTGCCGGATTTTAAACTGTGAAAAGTAT 10635 24 87.5 0 C....................C.T | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 95.8 38 TCCCCGCACACGCGGGGGTGATCC # Left flank : TAGTATCTTTTTCATTTGAATTCCTCCCAGGGTGTCTCAATAGACGCCCTATTTTGCGTTGTAAAATCCTTTAATGGCACCAGAACAAATATCGCGCATATTGGGGCTTATTGCAAAAAATGACATGAATTCGTCAACCCTGGCAAGGCTGGGATCAACGTTTTCAAAGTACATAGGTACTAACAAACATATTGCGCCACTATTTGCGTCACCTTCGATACCGGTTTTAGATGGGGTGAAATACAAGAGGTTGCTGTCTCCATTTAGGATATGCGTGATTTCATGGGCAAGCTGGAAGGGCAGTTGCCTAGGAATATGCCAATTTAAATTGATAAGTATCCGCCTAGTTTTTGAATCAGCAGTACATGGTGTATTGGGAGACAACCGGTCTTCAAAGCCAACCTCAATGTCATAGATGGCAGCGTAGTCTAGTAAGCGGGAAAAGATTTCATCAATCATGTTTCCCACCTCGCAAAAAGCGACGGATTATCTCCAAGTCT # Right flank : TCAAAACAAGGAGCGCTCGATCAATCCGGTTAGACTTTTCTTCCGCGTGAAAAACTTCACGCGGTTTTTTGCTATCGCAAGCGCAACGCGGTAAAATGTATCCAACAATCTTGTCACCCATAGCGCTAATGGTAGCGCAGACGAAAGGTACGGTTATGAATTATAAAGATGATGGGTTAGCCTTGCATACAGATTTTTATGAATTGAATATGATGTATACGTATTGGAAGCAAGGAATCGCGGAACGCAATGCGATCTTTGAAGTGTACTTCCGAGACTTGCCATTCGGTAGCGGGTTTGCGGTGTTTGCGGGTCTGGAACATATCGTGAATTACCTCAAGGACTTGCACTTTAGCGATTCTGATATCGACTATCTTAAAGAAGTCACTGAATATCCGCAGGCGTTTCTTGATTATTTACATGACTTGAAATTCACTGGTACGATCCGTTCTGCTGTCGAAGGCGATTTGGTCTTCAATAATGAACCAATCGTGCAATTT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1177-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOI01000081.1 Lactobacillus baoqingensis strain 47-3 contig81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1176 28 100.0 33 ............................ TCTCATCATCCAAATCGTCTGTAATTTTTATTT 1115 28 100.0 33 ............................ TTGAGTAACATAAGATTTCCAAACAGTGTATCC 1054 28 100.0 34 ............................ TAATACCAACCCTATCAACTCAACGTTTTCTTTA 992 28 100.0 33 ............................ TCAGTAAGTCCGATCGAGAGTACACGCGGATAG 931 28 100.0 33 ............................ CGTTGATCAGCGGGCCGCCGTTGAAAAACTAGA 870 28 100.0 33 ............................ CTTGAGACCGTAAAAAGCTAATTGCTGTTTCGA 809 28 100.0 33 ............................ TCAAACCGGCTTAATTGCCAGAGGTTTTTCCAA 748 28 100.0 33 ............................ CTACCGTGTGTATGATGTGGCCAACGTAAAATA 687 28 100.0 33 ............................ GCTTCAATCGCTGACTGCGTAGCATTACCTGAC 626 28 100.0 33 ............................ CATTTTTCCTCCGAGGCCATTGCGATGATAAAG 565 28 100.0 33 ............................ CGATGGCGACTTGAGCAATGCTTTAACCCGTGA 504 28 100.0 33 ............................ TTATCGTGTGTATGACGTGGCCAACGTAAAATA 443 28 100.0 33 ............................ TATAACGTATCTTGGGATGAGTTCATTAAATAC 382 28 100.0 33 ............................ TAAGCCTAGGAGGGCATACATTATGAAAAAAGT 321 28 100.0 33 ............................ TCATACCCGTGAGCTTCCAAAACCTCTCTAGGC 260 28 100.0 33 ............................ CGTAGTGAGCATAGGCTCGCGCTTCGTTCTCTA 199 28 100.0 33 ............................ TGGAATTGTGGCGGTTGCCACTGCTGTATGGAA 138 28 100.0 33 ............................ TACCATATTTGAAACTAATTGCAACCACTTTTT 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 19 28 100.0 33 GTATTCCCCGCACACGCGGGGGTGATCC # Left flank : | # Right flank : CTCTCATCATCCAAATCGTCTGTAATTTTTATTTGTATTCCCCGCACACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1909-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOI01000009.1 Lactobacillus baoqingensis strain 47-3 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1908 28 100.0 33 ............................ TCACGGTTATATAGTCGCCGGGGTTTGCCATCG 1847 28 100.0 33 ............................ CGACGTTTATCTGCCAACCGGAGATCGTCACGG 1786 28 100.0 33 ............................ GCAGTAAGCCTGATGGTTTGCGCTATCGAGTTG 1725 28 100.0 33 ............................ CGTGTGACCGTTGAAATGAGTGTCAAACGCAGG 1664 28 100.0 33 ............................ CTACTGCTGAAATACGTAAAATAATAAATTTCG 1603 28 100.0 33 ............................ CCACTTGACCGCTTGCAAATCGGTATTGGGACG 1542 28 100.0 33 ............................ TGCGACATCACAGGACTTGCTAGTGGCCAGTTA 1481 28 100.0 33 ............................ TGCCATCTGATGATGCCTTAGACGCACCAAGGT 1420 28 100.0 33 ............................ TAGCGGAAGTGGCATCAAACGGTGTTTGCCATT 1359 28 100.0 33 ............................ AGCTGGATATAGCAAGAAATATGCAAATACAAA 1298 28 100.0 33 ............................ TATAATGATGATGAATAGGATTGGTGCGTAATG 1237 28 100.0 33 ............................ TAGTACCAATATTTTGACTATTTGCAACCTTTG 1176 28 100.0 33 ............................ TCAATATTGCCGTTTCGCTGATCGAGCTGCTTG 1115 28 100.0 33 ............................ CTAGATCATAGTGCAACTACACTTACCATCTTC 1054 28 100.0 33 ............................ CCAATTGCAACCACTTTTTTAATTATTTTTTAG 993 28 100.0 33 ............................ TTACTGAAGTATAATGGACAACATTATCAGTAG 932 28 100.0 33 ............................ TTCTTGGTGTAGTCACTGACCCGACTACTGCCG 871 28 100.0 33 ............................ TCCCGTTACCGGCTTTGCCTGTATCGCCCATCT 810 28 100.0 33 ............................ TCCCAAATGGCACTATTTCAGAGCGTTGCTGAA 749 28 100.0 33 ............................ TTGCTGTTTCGATATTTACACTCATGCTATTTA 688 28 100.0 33 ............................ TGCCAAAGCGTTTAACTCAGTTGCTGGATATGC 627 28 100.0 34 ............................ CTTGCGTGATACTGTATACAGCCAGATCGGGTGG 565 28 100.0 33 ............................ CTGCTGCTCAGGAGTGGGAATCACCTTATTGGC 504 28 100.0 33 ............................ CGTAGTGTGCATAGGCGCGTGCTTCGTTTTCTA 443 28 100.0 33 ............................ TGCTGATGGCAGTCAAACAGTTACGGCCTTAAT 382 28 100.0 33 ............................ AGTTGGATGTCTTTCCACGCCATGGCGGAGGTG 321 28 100.0 33 ............................ TATATTTTTGACCTGCTTCACCGCCGTAAAATA 260 28 100.0 33 ............................ CAGCGGACTATGTAGTTAATGAAGAAAATGTGC 199 28 100.0 33 ............................ TTCTTCTGCAAGCGCACGGTATTGTGGATCAAT 138 28 100.0 33 ............................ CACGACATTGAAAAACGGCATGAAGCAGAGGGC 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 31 28 100.0 33 GTATTCCCCGCACACGCGGGGGTGATCC # Left flank : GATACGGCGTTGGCATTGGCTGGTTTTCCGACAGACCCAACGGCGCGGTATGCCTTGCATGCGGATAAAGATGGCAATGTTGAGCAGGCAAGCGTCACGATCATGGCCAACGGCATCCGCGGTGAAGCAGCGATCAACTTGGTGGCTGGGACGAATCTGGAGGAGGCGACGGTTGCCACTCCTAACGGGTTATTCCGCGTGGCTGATCTGGCGACTAGCCATACTTATCAAGGCACCAGCGAAACAGTGATTGCCGCACCGGATTGGCAACCCATGTTAGAAACACGCGGTTTTGCGCCAATGATCAAAGCGTTCCTTGAGGCAGTGACCAATTCCGGTGAAAACCCGGTATTGCCGGAAACCAGTCGGCTGACACATCAACTATTGAGTGACATGGTTGCAGAGCTGCAGGGCTGAGCATGAGTTCTTGCTGGTGTTAAAGTCATGTAAAATGCGAAATTTGCAATTGTAGAATGCCGGTTTGACGGGATTTGTTTAGT # Right flank : CCCAGCCAAACAAAGCCCCACCGCCCAACTCTACGTATTCCCCGCACACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //