Array 1 1056311-1048298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH393257.1 Halomonas boliviensis LC1 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1056310 28 100.0 32 ............................ GCAGCCTACAAAAGGTGCTTCCACGCATCACC 1056250 28 100.0 32 ............................ TTTGAAGACCAGCTCCCCTACATACCCCATCC 1056190 28 100.0 32 ............................ AACGATGAAAAAGAGCAGCAACGCCACTACAG 1056130 28 100.0 32 ............................ AGGAGCCAGACAACTCGCTGCGGCTTCAAGGT 1056070 28 100.0 32 ............................ AAACAGAGCGCACTACTTCTGTTCCCCTGCTT 1056010 28 100.0 33 ............................ CCTGACCAGCCGCTTCGATCACTACGGCCCGCT 1055949 28 100.0 32 ............................ AACAACGGCAATAAGTATCAATAACCATACAA 1055889 28 100.0 32 ............................ ATTAAACACGGTTACCCCTTGCTCACGCAGGC 1055829 28 100.0 32 ............................ CAAGGCGATAGCGTGCCGATGCCGGTTACGGC 1055769 28 100.0 32 ............................ AGTGATAGATCGGAGGCAGTTTCTAACGTGGT 1055709 28 100.0 32 ............................ ACCTGAAAGAAGCGGAGGCCGATGTTTTCGAG 1055649 28 100.0 32 ............................ TGACTCACCATAGTCATCACCTGTATTTTCTT 1055589 28 100.0 32 ............................ ATTGTGCCCCATCGCGCCCCGCGCACCGCCCT 1055529 28 100.0 32 ............................ ATTGGATAGCCTCCAGGGTTTCCAGGGTTTCA 1055469 28 100.0 32 ............................ TAGACGCCCTGGTATTCGACGCCGTAAACGAA 1055409 28 100.0 32 ............................ CCTTTTTTAATGATTTCTTCGCACAAGTTGGC 1055349 28 100.0 32 ............................ CGGCTGCCACCGAGTACGATGGCGAGCAGTTA 1055289 28 100.0 32 ............................ TAGCGCATTTATGCCGCCCTCAATAAGCTCTT 1055229 28 100.0 32 ............................ ACGGGGAATTCGGACCATGTTTTGCGGCAAAT 1055169 28 100.0 32 ............................ ATATCGGCAACGTCGGTTGGCATTTCAGCGTA 1055109 28 100.0 32 ............................ ATTATGAGCGGCATAGAGCAGGTTGTTGGCGG 1055049 28 100.0 32 ............................ AGTGGAGCCAATCGCTAGCTGCCAGAAGGCGT 1054989 28 100.0 32 ............................ CGGCGCAGCTACCCTGGTACACCCCTATTTAG 1054929 28 100.0 32 ............................ ATCCGGTAGCCGTCGGGTACTGACTGGGTCTG 1054869 28 100.0 32 ............................ AGCCGCTGGGAGGGCTTAACCAGTTGGCTTTC 1054809 28 100.0 32 ............................ TTGCTCGGCGTGGTGCCGTCGATTTCAGCGGT 1054749 28 100.0 32 ............................ AGTCCGCACCCATGGCCGCAATGGCGGCATCT 1054689 28 100.0 32 ............................ ACAGCGACACCGCGACGATCGGCAACGGTCGC 1054629 28 100.0 32 ............................ TCTCATAAAGCTTGTCATTCACCGCATCGGAG 1054569 28 100.0 32 ............................ AAACAGCGAATTCCACGCGCCACCGAGGATGT 1054509 28 100.0 32 ............................ ATAAGGGTGGGCATTGGACGCAGAAAGACCAG 1054449 28 100.0 32 ............................ ACCGGCTTCCTGTATTTTGTGTAAGAAACTGT 1054389 28 100.0 32 ............................ AGTAGGGGCTTTCCTTTGTGACGGTGAATCCT 1054329 28 100.0 32 ............................ AATGGTTGCCTTTTCAAGCGGTGTCGTTGTTC 1054269 28 100.0 32 ............................ TTGGCCCCTGGCGGGCAGTACACACACCTCGC 1054209 28 100.0 32 ............................ TTATTGTCAGCTTGTTACAGAGCGCGGGGTAA 1054149 28 100.0 33 ............................ CGAGGCAGCCCAAGCAGCCAAAAAGCCCTCAAC 1054088 28 100.0 33 ............................ CAAACTGAGCGCACTACCTCCGTTCCCCTGCTC 1054027 28 100.0 32 ............................ AGTCACACGACCAGTGACCACGGGCACCACTT 1053967 28 100.0 33 ............................ CTGACCTCGCTCAGCGCGGACATCCCTAACTTG 1053906 28 100.0 33 ............................ CTGGTCAACCTTTACCGCGTAGTGCAGAACCAC 1053845 28 100.0 32 ............................ AAAGCGGTCGCGGTCGTTAAAGCGGCCACGGG 1053785 28 100.0 32 ............................ AGAAATAACGTTATCTGCACTCAATGCTCCGC 1053725 28 100.0 32 ............................ AAAATATCCAGCCCGTTAACGGCATTGCACCC 1053665 28 100.0 32 ............................ TCACGGTAAGCAGATATAAAAAAGCCCCAGCG 1053605 28 100.0 32 ............................ TCAACGCGCTCGTCACCGTTGGCGAAGAACAC 1053545 28 100.0 32 ............................ AGCCCACGGAGCCACGCTGACCGAGTGGATCA 1053485 28 100.0 32 ............................ TTCCTAGAGCTGTGCCAACGGCTACGCCAAGA 1053425 28 100.0 32 ............................ ACAGGGATGGACGTTACTGCGCAGTTTAACGC 1053365 28 100.0 32 ............................ GTTTATCGTAACAAAGGCCCGTCTTCTACTCA 1053305 28 100.0 32 ............................ ATAATTAAAACCATCAATATTTTTAGCGTAAT 1053245 28 100.0 32 ............................ AACAGCAACTAAGCCAGACTCCACACCACTAA 1053185 28 100.0 32 ............................ TTATTAGAAGATGAATCAAAAGCAGCAATACC 1053125 28 100.0 32 ............................ ATTAAATCGGAAGCACGAACATTAGAAAAAGA 1053065 28 100.0 32 ............................ TCTCGCCGCCCCTGATAAGCACCCAAGTAGAT 1053005 28 100.0 32 ............................ AAAGTATACCGCTAGTTGGATGAGCAAGCCAG 1052945 28 100.0 32 ............................ AATACAGGGTGCGGGCAGTCATGCGCGGGGAG 1052885 28 100.0 32 ............................ GGTACCGCCGCTAGAAAACCTCATGTTCCAGC 1052825 28 100.0 32 ............................ TAGCCGAACGCTTCGACGCCGTGGCCACCGTC 1052765 28 100.0 32 ............................ TGCAGTTACTACAAGCTGACGGTAGACGGCGA 1052705 28 100.0 32 ............................ GCGATCAACGTCACCGTCGAAGAAAAGCGCAT 1052645 28 100.0 32 ............................ AATACAATCACCGCTTTCATGGCTGATAAGGT 1052585 28 100.0 32 ............................ ATATCAAGAGCGCGAAAGCGAAGTGCAGGGTT 1052525 28 100.0 32 ............................ ATTTTGACAGCTAGCGCGTTCGGTCTAACACA 1052465 28 100.0 32 ............................ GCTCGATGATAGCGCTGAGCATGTGCGCGTTC 1052405 28 100.0 32 ............................ AAGGCGGCGAGCGATGCGGTTCCGGCGGCTGC 1052345 28 100.0 32 ............................ GATAACGGCGGTGTTGATAATGCGAATGGGGC 1052285 28 100.0 32 ............................ TGGCAGCGTCATCGAATGGCGCTCCGAGACCC 1052225 28 100.0 32 ............................ CGCAACGCAGGAGGTGGCATTGGAGGCTTCCG 1052165 28 100.0 33 ............................ ATCATCACGTTCATAATTACTCTCTCATAAAGG 1052104 28 100.0 32 ............................ CGAAAAAGCTGCAAGTCCTAGCGATGCGATTG 1052044 28 100.0 32 ............................ AGCCCGCCGTAAGTGTCGGCAAGCTTCTTCAA 1051984 28 100.0 32 ............................ CCCATGTCTTCCAGATATGGCGCAGCGCCGCT 1051924 28 100.0 32 ............................ TCGTCAGTCCAGTAAACGTGCCCACGATAGTC 1051864 28 100.0 32 ............................ AAATCGACTCGCTAACCCACCTTTCTATGACT 1051804 28 100.0 32 ............................ GCGCAACAACGCCGCCCACTGGCTAACCAAAA 1051744 28 100.0 32 ............................ AGCAGGTGTGCCAGCAGATTTAAGATGATTTC 1051684 28 100.0 32 ............................ GATGAAGCGGTGCCCAAAGATACCGATGGGAA 1051624 28 100.0 32 ............................ TAAGCCTTTCCACGACCACTTGCCATTGGGAC 1051564 28 100.0 32 ............................ TCTGTGGCATGGCATGTGGCATCCATTCCAGC 1051504 28 100.0 32 ............................ ACTGCATCATGGCGCGCCGTTTTTCAATGTAC 1051444 28 100.0 32 ............................ ATGAAAGGCGTACCGATGCCAGCAATTAAAGA 1051384 28 100.0 32 ............................ TAGTCGTACAATTATCAATAGCAACATCAACA 1051324 28 100.0 32 ............................ TTAACAAGCCGCTGTCGCCGCCCGGTCAGCCG 1051264 28 100.0 32 ............................ GTATGCGTCGAGGTCGATGGGCGGCTGGGTGT 1051204 28 100.0 32 ............................ GCTTGAGTGCATAGCCCTCATATCCCTTACCT 1051144 28 100.0 32 ............................ AGATATGAAATCAGAGATATTGTCTATCCTAA 1051084 28 100.0 32 ............................ GTGCTGGCCATGACACTTACAGGCTCTGACAC 1051024 28 100.0 32 ............................ CATTCCATTGGCTCCGATACCAGCAGCACGAC 1050964 28 100.0 32 ............................ TGGGTGGTTGGCTGTGTGCACGGCAATAGCGG 1050904 28 100.0 32 ............................ GGCAACCACTGACTTTAGGGTTCGACTCCCTT 1050844 28 96.4 32 ......................C..... CGTGACCTGTCAGTGATGGGCAGGCTAAAGGC 1050784 28 96.4 32 ......................C..... TGTTCGACCTTGATCAATTGCGCTTGGAGTAC 1050724 28 96.4 32 ......................C..... GCAAAGACAGGCTTGAATTCGACGCGGGTTGG 1050664 28 96.4 32 ......................C..... GCTCGCACGATTACAGCATCACGGTGCGCGGA 1050604 28 96.4 32 ......................C..... CGGGGCTTTTTGCTTTCCGATATATGCCCGCC 1050544 28 96.4 32 ......................C..... TGCTCAATTGGCAAAACATCGCATTGAGCGAT 1050484 28 96.4 32 ......................C..... AGTGATGGCCGTTTTATGCGTTTTGTAGCGCC 1050424 28 96.4 32 ......................C..... AACCAGGCGGGAAGGATCGAAGCGATGCAAGC 1050364 28 96.4 32 ......................C..... TACGTCATCGTTGATATCTGCCTGCGCATGCT 1050304 28 96.4 32 ......................C..... TTTGCCGACGTACAGCGGCGTCTTAGTGGTGT 1050244 28 96.4 32 ......................C..... TTCACTTTCTTGTTGAATTGTTTGTTGGTCAT 1050184 28 96.4 32 ......................C..... GGATGGAGCTTCGCCTGATTGCTGCTTATGGC 1050124 28 96.4 32 ......................C..... ATTGCTCGGTTTGCATTTCCAAGAACCGAAGG 1050064 28 96.4 32 ......................C..... ACAAAGGCTTCCGTACCGGATGCAGCCCGCTC 1050004 28 92.9 32 ........T.............C..... ATTATCAACACCCCGTAAGCGCTCTACGATCA 1049944 28 96.4 32 ......................C..... TGCGCGTCCCATGCTTCCACGGTTAACCAGAA 1049884 28 96.4 32 ......................C..... TTGGCGAGCAAGCAAAAGGCACGCTTGCAGGA 1049824 28 96.4 32 ......................C..... AGGCTGAGCTTCGTCCGCCTCTATGCGCACGA 1049764 28 96.4 32 ......................C..... ATGCGGCGCATCCAGTAGCTGCTCCAGGTGAC 1049704 28 100.0 32 ............................ AATAGCCCGCTTGAAATGTACTCCATGATGGC 1049644 28 96.4 32 ..T......................... TAAGGGCGCATTTGCTCGCCAGTGTTCCCGAA 1049584 28 100.0 32 ............................ TTCCGGTCGTGTTGGTCGGCGTGGCCAAGGAC 1049524 28 96.4 32 ......................C..... TCAGTTTTAGCGGCACTAATTGTCTTCCGTTT 1049464 28 96.4 32 ......................C..... GTGTGGAGCCAGTGCCATTTCTCTAGCGACAA 1049404 28 96.4 32 ......................C..... TGCCCCAAACGCACACAGTTTTCGACGATGGC 1049344 28 96.4 32 ......................C..... CAATTTTCAGCCAAGTAAACGGGTACTCCTTC 1049284 28 96.4 32 ......................C..... GGAAACGAATAGCGGTGATTCAGGGTCAAGCC 1049224 28 96.4 32 ......................C..... TGGCGAGGGAGATAAAAGGGAGATGGCAGGCC 1049164 27 92.9 32 .....-................C..... CCAAAGCGATTTAGTCGCGCGGCTTGAGCTGA 1049105 28 96.4 32 ......................C..... TGCTTGATTAGACGCCTGCTGCGGATGCCATC 1049045 28 96.4 32 ......................C..... AACGTACCCGCCAACGCCTAGCGTCATTAGAT 1048985 28 96.4 32 ......................C..... GCCGCGGCCATCACGGTATTAGCGCCCCAGTA 1048925 28 96.4 32 ......................C..... CACTCGCCGTAGCGCGTGATATTGTCGTAGAG 1048865 28 100.0 32 ............................ TGAAAGGGCCGATGAGTGAGACGTGATTGATC 1048805 28 92.9 32 ...........A..........C..... AGATATGCGGGCGGTTCGCGGCGTTGGTGGGG 1048745 28 96.4 32 ......................C..... ATGCGGGTGAAGCACGGCGGGCGGATCTACAA 1048685 28 96.4 32 ......................C..... TGAAGAAGACGCAGAGTGGGCGCTAAAGGATC 1048625 28 96.4 32 ......................C..... TCAATGAACAAGGCAAGGCCGGTGCCTTCACG 1048565 28 96.4 32 ......................C..... TCGCCAAAAATAACGTTGTAGAAATTCATTAA 1048505 28 96.4 32 ......................C..... ACGTGCCGCCGGCGGGAAATTGACCCTTAAAA 1048445 28 96.4 32 ......................C..... ACCGGGCGCTGTGGGCATTTGACCAGGGCCAC 1048385 28 100.0 32 ............................ AAGCGATGCCCGGCATCGCCGTTGTGACCGGA 1048325 28 92.9 0 ......................C....T | ========== ====== ====== ====== ============================ ================================= ================== 134 28 98.8 32 GTGCGCTGCCGCCCAGGCAGCTTAGAAA # Left flank : CACGCTTGCAGCAGCTAATGAGTGCGGACTGGCTAACGGGCATGCGCGATCACACCCAGGTGAGCGAGGTGCTTGCGGTGCCTGCGGGTGCTCAGCATATCAACGTGGCGCGCAAGCAGTTCAATACGGGAAACCCAAGCCGTGCCAAGCGCTACGCCAAGCGGCATGACATTTCGGAAGACGAAGCGCAGCAGATTTATGCAAAGCTAGCGGCGCGGCGCATTGAGCTACCCTTCGTGCAAATAAATAGCCGCTCCACCCAGCAGCGCTTTAGCCTGTTTATTGAACATGGCAAACCGACCGCTTCTGCCACGGAGGGCACGTTTAGCCATTACGGCCTAAGCCCCAACGCAACGGTGCCCTGGTTTTGACCCTTTTTTTCAGCGATAAAATAGGCCACTAATAATCAACCACTTAGCGGTATCGCTCAAAAAAGGGTGATACCGCTTTTTTCGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATAAGCTCTA # Right flank : AGGTTGGGGAGTTCGAGTCTCCCCACCCGGACTGTGTAAGGGATGTGCCTTGGCATTAATGCGCTTGTGCCGATTGGCACTTCAACCTCACAAAAAAGCCACCGCGTCGGTGGCTGTGACTGCTGAATTTCGATCAATGCTAGGCGTTAATCTTCTTGCGGCGGTGCTTCTAGGGCGCGTTTGTCGTCGGGTACTCGGACGATATGGCCGACTTCCAGCTTGTTATGGCTTTGGTGGCGGCCGCCTTTGGTGTCAATGATCGCGGCGACTTCGCCAATGCTGACCGCGTCGTCTTCTCGGTAGGCTTCTACTTTGACGCGCACCATGACGCCTTGGTAGCGGGCGGAAATAATGTCGCCTGGGTCGGGTTGGCCGCTTTGATCCGGGTGTTTTTTAAAGTACTGCATAACACTGGTGTTGCCGGGTTCGTCCCATTCGATATGCTGATGCATCGTTGTCTTCCTTGTTTAAATAAGAGTGCCATGATGAGTATGGCTTAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //