Array 1 859024-857044 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKVB01000001.1 Klebsiella pneumoniae strain EuSCAPE_IT149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 859023 28 100.0 33 ............................ TGCACCAGGTAAATTGCTTGGCACGAATACTCC 858962 28 100.0 33 ............................ CTGTACCAGAAACGTTTTCTATATTTAGAACGT 858901 28 100.0 33 ............................ TGAGCACCGAGATATCATCATCGCAACAGGACT 858840 28 100.0 33 ............................ CACTTATTTCCAGATTGTGGATAATGAGGCGCT 858779 28 100.0 33 ............................ CACCACGGATAGTTGGCTGAGAGGCCGAAAGCA 858718 28 100.0 33 ............................ CTCGACCCGCTTGAGCGTGCAAAGGCTTATTTG 858657 28 100.0 33 ............................ CCAGAAGCTACAGGAAGAAGCGGCAAGGCTTGA 858596 28 100.0 33 ............................ CGTTATTGATGCCGCCGTTGAGGAAGCGAAAGC 858535 28 100.0 33 ............................ CCCGCCGAAGCGGGTTAAAGGGTGGTGGGTGAT 858474 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 858413 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 858352 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 858291 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 858230 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 858169 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 858108 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 858047 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 857986 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 857925 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 857864 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 857803 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 857742 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 857681 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 857620 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 857559 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 857498 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 857437 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 857376 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 857315 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 857254 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 857193 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 857132 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 857071 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : CCTTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTG # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 868841-867775 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKVB01000001.1 Klebsiella pneumoniae strain EuSCAPE_IT149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 868840 28 100.0 33 ............................ CGTAACTTTGTTTTTCTCATCCACGCTGAAGTG 868779 28 100.0 33 ............................ TCATGTTGTGGAGCGATATACAGGCTGCATGCG 868718 28 100.0 33 ............................ CAGGTAAGAGCATTGTCAGGTAGCTTCAGGGGA 868657 28 100.0 33 ............................ CCTTTTTCAGTAATCTTCCAGAAAGTTTCATGA 868596 28 100.0 33 ............................ TGAAGTGGTTCCACGCATCCACAATATTTGTGA 868535 28 100.0 33 ............................ TCATTCAGGTCATTAGATGGAATTGGCTTGTTA 868474 28 100.0 33 ............................ CTTCGAGTTAAACATTTTTGACGGTGTTAATGT 868413 28 100.0 33 ............................ CAGGTAAGAGCATTGTCAGGTAGCTTCAGGGGA 868352 28 100.0 33 ............................ TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 868291 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 868230 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 868169 28 96.4 33 .............G.............. CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 868108 28 96.4 33 .............G.............. TATCGTGCAGAGTCACAACCTGACGGGATTATC 868047 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 867986 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 867925 28 96.4 33 .............G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [867916] 867863 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 867802 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.4 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //